Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:15:48 (30820): wrapper (7.7.26015): starting
15:15:48 (30820): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:15:48] Arguments: --nthreads 12
[2025-07-27 15:15:48] Threads: 12
[2025-07-27 15:15:48] Checking for CVMFS
[2025-07-27 15:15:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:15:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:15:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:15:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:15:48] 2.11.2.0 2913 112409 95024 148822 4 1 15443433 20275201 1 130560 0 39124927 99.972 9825823 10830 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:15:48] CVMFS is ok
[2025-07-27 15:15:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:15:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:15:48] Further information can be found at the LHC@home message board.
[2025-07-27 15:15:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:15:48] Checking for apptainer binary...
[2025-07-27 15:15:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:15:48] Running /usr/bin/apptainer --version
[2025-07-27 15:15:48] apptainer version 1.3.2-1.el7
[2025-07-27 15:15:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:15:50] c-205-6.aglt2.org
[2025-07-27 15:15:50] apptainer works
[2025-07-27 15:15:50] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:15:50] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:15:50] Starting ATLAS job with PandaID=6747412648
[2025-07-27 15:15:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:37:24]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:37:24]  workdir=None
[2025-07-27 16:37:24] ]
[2025-07-27 16:37:24] 2025-07-27 20:36:43,358 | INFO     | transferring file log.45743349._049568.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412648/log.45743349._049568.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:37:24] 2025-07-27 20:36:43,358 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412648/log.45743349._049568.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049568.job
[2025-07-27 16:37:24] 2025-07-27 20:36:43,380 | INFO     | adding to output.list: log.45743349._049568.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1a/1a/log.45743349._049568.job.log.tg
[2025-07-27 16:37:24] 2025-07-27 20:36:43,381 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:37:24] 2025-07-27 20:36:43,381 | INFO     | summary of transferred files:
[2025-07-27 16:37:24] 2025-07-27 20:36:43,381 | INFO     |  -- lfn=log.45743349._049568.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:37:24] 2025-07-27 20:36:43,382 | INFO     | stage-out finished correctly
[2025-07-27 16:37:24] 2025-07-27 20:36:44,724 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:37:24] 2025-07-27 20:36:46,243 | WARNING  | process 8624 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:37:24] 2025-07-27 20:36:46,244 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412648/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,244 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412648/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,245 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4557634 B
[2025-07-27 16:37:24] 2025-07-27 20:36:46,245 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15789 B
[2025-07-27 16:37:24] 2025-07-27 20:36:46,246 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:37:24] 2025-07-27 20:36:46,263 | INFO     | sufficient remaining disk space (29345447936 B)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,263 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,264 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747412648: 4858496 B (within 2537553920 B limit)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,265 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747412648/HITS.45743349._049568.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,265 | INFO     | total size of present files: 0 B (workdir size: 4858496 B)
[2025-07-27 16:37:24] 2025-07-27 20:36:46,265 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747412648/HITS.45743349._049568.pool.root.1 since it does not exist
[2025-07-27 16:37:24] 2025-07-27 20:36:46,357 | INFO     | number of running child processes to parent process 8624: 1
[2025-07-27 16:37:24] 2025-07-27 20:36:46,357 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:37:24] 2025-07-27 20:36:47,294 | INFO     | job 6747412648 has state=finished
[2025-07-27 16:37:24] 2025-07-27 20:36:47,295 | INFO     | preparing for final server update for job 6747412648 in state='finished'
[2025-07-27 16:37:24] 2025-07-27 20:36:47,295 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:37:24] 2025-07-27 20:36:47,295 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:37:24] 2025-07-27 20:36:47,296 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:37:24] 2025-07-27 20:36:47,296 | INFO     | job 6747412648 has finished - writing final server update
[2025-07-27 16:37:24] 2025-07-27 20:36:47,296 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:37:24] 2025-07-27 20:36:47,297 | INFO     | executing command: lscpu
[2025-07-27 16:37:24] 2025-07-27 20:36:47,324 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:37:24] 2025-07-27 20:36:48,861 | INFO     | monitor loop #361: job 0:6747412648 is in state 'finished'
[2025-07-27 16:37:24] 2025-07-27 20:36:48,867 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:37:24] 2025-07-27 20:36:51,370 | INFO     | monitor loop #362: job 0:6747412648 is in state 'finished'
[2025-07-27 16:37:24] 2025-07-27 20:36:51,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,180 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 16:37:24] 2025-07-27 20:36:52,184 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 16:37:24] 2025-07-27 20:36:52,187 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412648/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,187 | INFO     | extracted standard info from prmon json
[2025-07-27 16:37:24] 2025-07-27 20:36:52,187 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:37:24] 2025-07-27 20:36:52,188 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:37:24] 2025-07-27 20:36:52,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:37:24] 2025-07-27 20:36:52,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:37:24] 2025-07-27 20:36:52,190 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:37:24] 2025-07-27 20:36:52,190 | INFO     | sum of square deviations: 115715658.0
[2025-07-27 16:37:24] 2025-07-27 20:36:52,190 | INFO     | sum of deviations: -7223943818.500001
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | mean x: 1753646264.5
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | mean y: 2898220.236111111
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | -- intersect: 109480235265.41277
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | intersect: 109480235265.41277
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | chi2: 0.07442073531330397
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | -- intersect: 109480235265.41277
[2025-07-27 16:37:24] 2025-07-27 20:36:52,191 | INFO     | current memory leak: -62.43 B/s (using 72 data points, chi2=0.07)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | could have reported an average CPU frequency of 2067 MHz (6 samples)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | ..............................
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | . Timing measurements:
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | . get job = 0 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | . initial setup = 2 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | . payload setup = 9 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | . stage-in = 0 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,192 | INFO     | . payload execution = 4809 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,193 | INFO     | . stage-out = 0 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,193 | INFO     | . log creation = 0 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,193 | INFO     | ..............................
[2025-07-27 16:37:24] 2025-07-27 20:36:52,277 | INFO     | 
[2025-07-27 16:37:24] 2025-07-27 20:36:52,277 | INFO     | job summary report
[2025-07-27 16:37:24] 2025-07-27 20:36:52,277 | INFO     | --------------------------------------------------
[2025-07-27 16:37:24] 2025-07-27 20:36:52,277 | INFO     | PanDA job id: 6747412648
[2025-07-27 16:37:24] 2025-07-27 20:36:52,277 | INFO     | task id: 45743349
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | errors: (none)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | pilot state: finished 
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | transexitcode: 0
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | exeerrorcode: 0
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | exeerrordiag: 
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | exitcode: 0
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | exitmsg: OK
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | cpuconsumptiontime: 52320 s
[2025-07-27 16:37:24] 2025-07-27 20:36:52,278 | INFO     | nevents: 400
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | neventsw: 0
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | pid: 8624
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | pgrp: 8624
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | corecount: 12
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | event service: False
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4822: 2424013, 4824: 2433011, 4825: 2433067, 4832: 2433417}
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | --------------------------------------------------
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | 
[2025-07-27 16:37:24] 2025-07-27 20:36:52,279 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:37:24] 2025-07-27 20:36:52,303 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,303 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,304 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,304 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,304 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,305 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,305 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,305 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,305 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,305 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,305 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,306 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,306 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,306 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,306 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:37:24] 2025-07-27 20:36:52,307 | INFO     | job 6747412648 has completed (purged errors)
[2025-07-27 16:37:24] 2025-07-27 20:36:52,307 | INFO     | overall cleanup function is called
[2025-07-27 16:37:24] 2025-07-27 20:36:53,311 | INFO     | --- collectZombieJob: --- 10, [8624]
[2025-07-27 16:37:24] 2025-07-27 20:36:53,311 | INFO     | zombie collector waiting for pid 8624
[2025-07-27 16:37:24] 2025-07-27 20:36:53,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:37:24] 2025-07-27 20:36:53,311 | INFO     | collected zombie processes
[2025-07-27 16:37:24] 2025-07-27 20:36:53,312 | INFO     | will attempt to kill all subprocesses of pid=8624
[2025-07-27 16:37:24] 2025-07-27 20:36:53,405 | INFO     | process IDs to be killed: [8624] (in reverse order)
[2025-07-27 16:37:24] 2025-07-27 20:36:53,457 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:37:24] 2025-07-27 20:36:53,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:37:24] 2025-07-27 20:36:53,461 | INFO     | did not find any defunct processes belonging to 8624
[2025-07-27 16:37:24] 2025-07-27 20:36:53,464 | INFO     | did not find any defunct processes belonging to 8624
[2025-07-27 16:37:24] 2025-07-27 20:36:53,464 | INFO     | ready for new job
[2025-07-27 16:37:24] 2025-07-27 20:36:53,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:37:24] 2025-07-27 20:36:53,466 | INFO     | ***************************************
[2025-07-27 16:37:24] 2025-07-27 20:36:53,466 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:37:24] 2025-07-27 20:36:53,466 | INFO     | ***************************************
[2025-07-27 16:37:24] 2025-07-27 20:36:53,466 | INFO     | 
[2025-07-27 16:37:24] 2025-07-27 20:36:53,467 | INFO     | architecture information:
[2025-07-27 16:37:24] 2025-07-27 20:36:53,467 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:37:24] 2025-07-27 20:36:53,482 | INFO     | cat /etc/os-release:
[2025-07-27 16:37:24] NAME="CentOS Linux"
[2025-07-27 16:37:24] VERSION="7 (Core)"
[2025-07-27 16:37:24] ID="centos"
[2025-07-27 16:37:24] ID_LIKE="rhel fedora"
[2025-07-27 16:37:24] VERSION_ID="7"
[2025-07-27 16:37:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:37:24] ANSI_COLOR="0;31"
[2025-07-27 16:37:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:37:24] HOME_URL="https://www.centos.org/"
[2025-07-27 16:37:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:37:24] 
[2025-07-27 16:37:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:37:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:37:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:37:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:37:24] 
[2025-07-27 16:37:24] 2025-07-27 20:36:53,483 | INFO     | ***************************************
[2025-07-27 16:37:24] 2025-07-27 20:36:53,986 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:37:24] 2025-07-27 20:36:54,002 | INFO     | sufficient remaining disk space (29350690816 B)
[2025-07-27 16:37:24] 2025-07-27 20:36:54,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:37:24] 2025-07-27 20:36:54,003 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:37:24] 2025-07-27 20:36:54,003 | INFO     | update_server=False
[2025-07-27 16:37:24] 2025-07-27 20:36:54,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:37:24] 2025-07-27 20:36:54,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:37:24] 2025-07-27 20:36:54,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:37:24] 2025-07-27 20:36:54,034 | INFO     | all payload control threads have been joined
[2025-07-27 16:37:24] 2025-07-27 20:36:54,218 | INFO     | all data control threads have been joined
[2025-07-27 16:37:24] 2025-07-27 20:36:54,814 | INFO     | all job control threads have been joined
[2025-07-27 16:37:24] 2025-07-27 20:36:54,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:37:24] 2025-07-27 20:36:54,879 | INFO     | aborting loop
[2025-07-27 16:37:24] 2025-07-27 20:36:55,008 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,009 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,039 | INFO     | [payload] control thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,222 | INFO     | [data] control thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:37:24] 2025-07-27 20:36:55,465 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,473 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,820 | INFO     | [job] control thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,825 | INFO     | [job] validate thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:55,884 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:56,010 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:56,080 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:56,189 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:56,195 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:56,316 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:36:59,319 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:37:04,685 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:37:24] 2025-07-27 20:37:05,690 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:37:24] 2025-07-27 20:37:07,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235370280768)>', '<ExcThread(monitor, started 140234633242368)>']
[2025-07-27 16:37:24] 2025-07-27 20:37:12,649 | INFO     | all workflow threads have been joined
[2025-07-27 16:37:24] 2025-07-27 20:37:12,649 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:37:24] 2025-07-27 20:37:12,649 | INFO     | traces error code: 0
[2025-07-27 16:37:24] 2025-07-27 20:37:12,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:37:24] 2025-07-27 20:37:24,224 | INFO     | PID=2093 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 16:37:24] 2025-07-27 20:37:24,231 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:37:24] 2025-07-27 20:37:24,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:37:24] 2025-07-27 20:37:24,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:37:24] 2025-07-27 20:37:24,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:37:24] 2025-07-27 20:37:24,232 | INFO     | [monitor] control thread has ended
[2025-07-27 16:37:24] 2025-07-27 20:37:24,324 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:37:24] 2025-07-27 20:37:24,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:37:24] 2025-07-27 20:37:24,331 [wrapper] pilotpid: 2093
[2025-07-27 16:37:24] 2025-07-27 20:37:24,335 [wrapper] Pilot exit status: 0
[2025-07-27 16:37:24] 2025-07-27 20:37:24,350 [wrapper] pandaids: 6747412648
[2025-07-27 16:37:24] 2025-07-27 20:37:24,388 [wrapper] cleanup supervisor_pilot 29174 2094
[2025-07-27 16:37:24] 2025-07-27 20:37:24,391 [wrapper] Test setup, not cleaning
[2025-07-27 16:37:24] 2025-07-27 20:37:24,395 [wrapper] apfmon messages muted
[2025-07-27 16:37:24] 2025-07-27 20:37:24,399 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:37:24] 2025-07-27 20:37:24,403 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:37:24]  *** Error codes and diagnostics ***
[2025-07-27 16:37:24]     "exeErrorCode": 0,
[2025-07-27 16:37:24]     "exeErrorDiag": "",
[2025-07-27 16:37:24]     "pilotErrorCode": 0,
[2025-07-27 16:37:24]     "pilotErrorDiag": "",
[2025-07-27 16:37:24]  *** Listing of results directory ***
[2025-07-27 16:37:24] total 433300
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 09:42 pilot3.tar.gz
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 10:02 queuedata.json
[2025-07-27 16:37:24] -rwx------ 1 boincer umatlas     36292 Jul 27 10:03 runpilot2-wrapper.sh
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas       100 Jul 27 15:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:37:24] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 15:15 run_atlas
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas       105 Jul 27 15:15 job.xml
[2025-07-27 16:37:24] -rw-r--r-- 2 boincer umatlas 228611461 Jul 27 15:15 EVNT.45743347._002733.pool.root.1
[2025-07-27 16:37:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 15:15 start_atlas.sh
[2025-07-27 16:37:24] drwxrwx--x 2 boincer umatlas      4096 Jul 27 15:15 shared
[2025-07-27 16:37:24] -rw-r--r-- 2 boincer umatlas    542905 Jul 27 15:15 input.tar.gz
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas         0 Jul 27 15:15 boinc_lockfile
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 15:15 pandaJob.out
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas    980125 Jul 27 15:16 agis_schedconf.cvmfs.json
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas   1593052 Jul 27 15:16 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:37:24] drwx------ 4 boincer umatlas      4096 Jul 27 15:16 pilot3
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 16:27 init_data.xml
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas 209532788 Jul 27 16:36 HITS.45743349._049568.pool.root.1
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas       529 Jul 27 16:36 boinc_task_state.xml
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas      1048 Jul 27 16:36 memory_monitor_summary.json
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas    377777 Jul 27 16:36 log.45743349._049568.job.log.tgz.1
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas      7854 Jul 27 16:36 heartbeat.json
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 16:37 boinc_mmap_file
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas        27 Jul 27 16:37 wrapper_checkpoint.txt
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas        95 Jul 27 16:37 pilot_heartbeat.json
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas       744 Jul 27 16:37 pilotlog.txt
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas    461595 Jul 27 16:37 log.45743349._049568.job.log.1
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas       357 Jul 27 16:37 output.list
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas       620 Jul 27 16:37 runtime_log
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas    860160 Jul 27 16:37 result.tar.gz
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas       658 Jul 27 16:37 YTcNDmZ9G07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXSVLDmCGX6Gn.diag
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 16:37 runtime_log.err
[2025-07-27 16:37:24] -rw-r--r-- 1 boincer umatlas     22550 Jul 27 16:37 stderr.txt
[2025-07-27 16:37:24] HITS file was successfully produced:
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas 209532788 Jul 27 16:36 shared/HITS.pool.root.1
[2025-07-27 16:37:24]  *** Contents of shared directory: ***
[2025-07-27 16:37:24] total 429272
[2025-07-27 16:37:24] -rw-r--r-- 2 boincer umatlas 228611461 Jul 27 15:15 ATLAS.root_0
[2025-07-27 16:37:24] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 15:15 start_atlas.sh
[2025-07-27 16:37:24] -rw-r--r-- 2 boincer umatlas    542905 Jul 27 15:15 input.tar.gz
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas 209532788 Jul 27 16:36 HITS.pool.root.1
[2025-07-27 16:37:24] -rw------- 1 boincer umatlas    860160 Jul 27 16:37 result.tar.gz
16:37:26 (30820): run_atlas exited; CPU time 52300.888358
16:37:26 (30820): called boinc_finish(0)

</stderr_txt>
]]>

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