Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:41:39 (694971): wrapper (7.7.26015): starting
16:41:39 (694971): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:41:39] Arguments: --nthreads 12
[2025-07-27 16:41:39] Threads: 12
[2025-07-27 16:41:39] Checking for CVMFS
[2025-07-27 16:41:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:41:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:41:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:41:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:41:39] 2.12.6.0 18753 18876 337396 148823 2 617 17136072 32935936 8602 16776704 0 33867939 99.626 73081620 26126 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:41:39] CVMFS is ok
[2025-07-27 16:41:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:41:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:41:39] Further information can be found at the LHC@home message board.
[2025-07-27 16:41:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:41:39] Checking for apptainer binary...
[2025-07-27 16:41:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:41:39] Running /usr/bin/apptainer --version
[2025-07-27 16:41:39] apptainer version 1.4.1-1.el9
[2025-07-27 16:41:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:41:39] c6-1-24-4.aglt2.org
[2025-07-27 16:41:39] apptainer works
[2025-07-27 16:41:39] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:41:39] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:41:39] Starting ATLAS job with PandaID=6747412914
[2025-07-27 16:41:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:55:01]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:55:01]  protocol_id=None
[2025-07-27 17:55:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:55:01]  replicas=None
[2025-07-27 17:55:01]  scope=mc23_13p6TeV
[2025-07-27 17:55:01]  status=None
[2025-07-27 17:55:01]  status_code=0
[2025-07-27 17:55:01]  storage_token=
[2025-07-27 17:55:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412914/log.45743349._049797.job.log.tgz.1
[2025-07-27 17:55:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/aa/log.45743349._049797.job.log.tgz.1
[2025-07-27 17:55:01]  workdir=None
[2025-07-27 17:55:01] ]
[2025-07-27 17:55:01] 2025-07-27 21:54:19,537 | INFO     | transferring file log.45743349._049797.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412914/log.45743349._049797.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:55:01] 2025-07-27 21:54:19,538 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412914/log.45743349._049797.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049797.job
[2025-07-27 17:55:01] 2025-07-27 21:54:19,559 | INFO     | adding to output.list: log.45743349._049797.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/aa/log.45743349._049797.job.log.tg
[2025-07-27 17:55:01] 2025-07-27 21:54:19,560 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:55:01] 2025-07-27 21:54:19,560 | INFO     | summary of transferred files:
[2025-07-27 17:55:01] 2025-07-27 21:54:19,560 | INFO     |  -- lfn=log.45743349._049797.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:55:01] 2025-07-27 21:54:19,561 | INFO     | stage-out finished correctly
[2025-07-27 17:55:01] 2025-07-27 21:54:20,014 | INFO     | monitor loop #322: job 0:6747412914 is in state 'finished'
[2025-07-27 17:55:01] 2025-07-27 21:54:20,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:55:01] 2025-07-27 21:54:22,519 | INFO     | monitor loop #323: job 0:6747412914 is in state 'finished'
[2025-07-27 17:55:01] 2025-07-27 21:54:22,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:55:01] 2025-07-27 21:54:22,734 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:55:01] 2025-07-27 21:54:23,213 | INFO     | job 6747412914 has state=finished
[2025-07-27 17:55:01] 2025-07-27 21:54:23,214 | INFO     | preparing for final server update for job 6747412914 in state='finished'
[2025-07-27 17:55:01] 2025-07-27 21:54:23,215 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:55:01] 2025-07-27 21:54:23,215 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:55:01] 2025-07-27 21:54:23,215 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:55:01] 2025-07-27 21:54:23,215 | INFO     | job 6747412914 has finished - writing final server update
[2025-07-27 17:55:01] 2025-07-27 21:54:23,216 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:55:01] 2025-07-27 21:54:23,217 | INFO     | executing command: lscpu
[2025-07-27 17:55:01] 2025-07-27 21:54:23,279 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:55:01] 2025-07-27 21:54:25,022 | INFO     | monitor loop #324: job 0:6747412914 is in state 'finished'
[2025-07-27 17:55:01] 2025-07-27 21:54:25,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:55:01] 2025-07-27 21:54:27,526 | INFO     | monitor loop #325: job 0:6747412914 is in state 'finished'
[2025-07-27 17:55:01] 2025-07-27 21:54:27,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,400 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:55:01] 2025-07-27 21:54:28,418 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2643.2606249999994
[2025-07-27 17:55:01] 2025-07-27 21:54:28,430 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412914/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,431 | INFO     | extracted standard info from prmon json
[2025-07-27 17:55:01] 2025-07-27 21:54:28,432 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:55:01] 2025-07-27 21:54:28,432 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:55:01] 2025-07-27 21:54:28,432 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:55:01] 2025-07-27 21:54:28,432 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:55:01] 2025-07-27 21:54:28,435 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:55:01] 2025-07-27 21:54:28,436 | INFO     | sum of square deviations: 81266640.0
[2025-07-27 17:55:01] 2025-07-27 21:54:28,436 | INFO     | sum of deviations: -8713345926.5
[2025-07-27 17:55:01] 2025-07-27 21:54:28,437 | INFO     | mean x: 1753651170.5
[2025-07-27 17:55:01] 2025-07-27 21:54:28,437 | INFO     | mean y: 2537952.421875
[2025-07-27 17:55:01] 2025-07-27 21:54:28,437 | INFO     | -- intersect: 188027652353.3388
[2025-07-27 17:55:01] 2025-07-27 21:54:28,437 | INFO     | intersect: 188027652353.3388
[2025-07-27 17:55:01] 2025-07-27 21:54:28,437 | INFO     | chi2: 0.2689018944813968
[2025-07-27 17:55:01] 2025-07-27 21:54:28,437 | INFO     | -- intersect: 188027652353.3388
[2025-07-27 17:55:01] 2025-07-27 21:54:28,438 | INFO     | current memory leak: -107.22 B/s (using 64 data points, chi2=0.27)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,438 | INFO     | could have reported an average CPU frequency of 2750 MHz (6 samples)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,438 | INFO     | ..............................
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . Timing measurements:
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . get job = 0 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . initial setup = 2 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . payload setup = 8 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . stage-in = 0 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . payload execution = 4316 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . stage-out = 0 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | . log creation = 0 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,439 | INFO     | ..............................
[2025-07-27 17:55:01] 2025-07-27 21:54:28,568 | INFO     | 
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | job summary report
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | --------------------------------------------------
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | PanDA job id: 6747412914
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | task id: 45743349
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | errors: (none)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | pilot state: finished 
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | transexitcode: 0
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | exeerrorcode: 0
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | exeerrordiag: 
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | exitcode: 0
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | exitmsg: OK
[2025-07-27 17:55:01] 2025-07-27 21:54:28,569 | INFO     | cpuconsumptiontime: 45295 s
[2025-07-27 17:55:01] 2025-07-27 21:54:28,570 | INFO     | nevents: 400
[2025-07-27 17:55:01] 2025-07-27 21:54:28,570 | INFO     | neventsw: 0
[2025-07-27 17:55:01] 2025-07-27 21:54:28,570 | INFO     | pid: 708525
[2025-07-27 17:55:01] 2025-07-27 21:54:28,570 | INFO     | pgrp: 708525
[2025-07-27 17:55:01] 2025-07-27 21:54:28,571 | INFO     | corecount: 12
[2025-07-27 17:55:01] 2025-07-27 21:54:28,571 | INFO     | event service: False
[2025-07-27 17:55:01] 2025-07-27 21:54:28,571 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 12: 2397793, 4328: 2423787, 4330: 2432785, 4333: 2432969, 4339: 2433163}
[2025-07-27 17:55:01] 2025-07-27 21:54:28,571 | INFO     | --------------------------------------------------
[2025-07-27 17:55:01] 2025-07-27 21:54:28,571 | INFO     | 
[2025-07-27 17:55:01] 2025-07-27 21:54:28,571 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:55:01] 2025-07-27 21:54:28,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:55:01] 2025-07-27 21:54:28,597 | INFO     | job 6747412914 has completed (purged errors)
[2025-07-27 17:55:01] 2025-07-27 21:54:28,597 | INFO     | overall cleanup function is called
[2025-07-27 17:55:01] 2025-07-27 21:54:29,606 | INFO     | --- collectZombieJob: --- 10, [708525]
[2025-07-27 17:55:01] 2025-07-27 21:54:29,607 | INFO     | zombie collector waiting for pid 708525
[2025-07-27 17:55:01] 2025-07-27 21:54:29,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:55:01] 2025-07-27 21:54:29,607 | INFO     | collected zombie processes
[2025-07-27 17:55:01] 2025-07-27 21:54:29,607 | INFO     | will attempt to kill all subprocesses of pid=708525
[2025-07-27 17:55:01] 2025-07-27 21:54:29,915 | INFO     | process IDs to be killed: [708525] (in reverse order)
[2025-07-27 17:55:01] 2025-07-27 21:54:30,020 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:55:01] 2025-07-27 21:54:30,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:55:01] 2025-07-27 21:54:30,032 | INFO     | did not find any defunct processes belonging to 708525
[2025-07-27 17:55:01] 2025-07-27 21:54:30,046 | INFO     | did not find any defunct processes belonging to 708525
[2025-07-27 17:55:01] 2025-07-27 21:54:30,047 | INFO     | ready for new job
[2025-07-27 17:55:01] 2025-07-27 21:54:30,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:55:01] 2025-07-27 21:54:30,051 | INFO     | ***************************************
[2025-07-27 17:55:01] 2025-07-27 21:54:30,051 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:55:01] 2025-07-27 21:54:30,051 | INFO     | ***************************************
[2025-07-27 17:55:01] 2025-07-27 21:54:30,051 | INFO     | 
[2025-07-27 17:55:01] 2025-07-27 21:54:30,069 | INFO     | architecture information:
[2025-07-27 17:55:01] 2025-07-27 21:54:30,069 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:55:01] 2025-07-27 21:54:30,089 | INFO     | cat /etc/os-release:
[2025-07-27 17:55:01] NAME="CentOS Linux"
[2025-07-27 17:55:01] VERSION="7 (Core)"
[2025-07-27 17:55:01] ID="centos"
[2025-07-27 17:55:01] ID_LIKE="rhel fedora"
[2025-07-27 17:55:01] VERSION_ID="7"
[2025-07-27 17:55:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:55:01] ANSI_COLOR="0;31"
[2025-07-27 17:55:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:55:01] HOME_URL="https://www.centos.org/"
[2025-07-27 17:55:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:55:01] 
[2025-07-27 17:55:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:55:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:55:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:55:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:55:01] 
[2025-07-27 17:55:01] 2025-07-27 21:54:30,090 | INFO     | ***************************************
[2025-07-27 17:55:01] 2025-07-27 21:54:30,593 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:55:01] 2025-07-27 21:54:30,614 | INFO     | sufficient remaining disk space (76366741504 B)
[2025-07-27 17:55:01] 2025-07-27 21:54:30,615 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:55:01] 2025-07-27 21:54:30,615 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:55:01] 2025-07-27 21:54:30,615 | INFO     | update_server=False
[2025-07-27 17:55:01] 2025-07-27 21:54:30,615 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:55:01] 2025-07-27 21:54:30,616 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:55:01] 2025-07-27 21:54:31,038 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:55:01] 2025-07-27 21:54:31,039 | INFO     | aborting loop
[2025-07-27 17:55:01] 2025-07-27 21:54:31,183 | INFO     | all data control threads have been joined
[2025-07-27 17:55:01] 2025-07-27 21:54:31,482 | INFO     | all payload control threads have been joined
[2025-07-27 17:55:01] 2025-07-27 21:54:31,532 | INFO     | all job control threads have been joined
[2025-07-27 17:55:01] 2025-07-27 21:54:31,621 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:31,950 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,044 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,065 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,189 | INFO     | [data] control thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,411 | INFO     | [job] validate thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,487 | INFO     | [payload] control thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,521 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,538 | INFO     | [job] control thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,566 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,621 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,826 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:32,946 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:33,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:55:01] 2025-07-27 21:54:33,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:55:01] 2025-07-27 21:54:34,585 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:37,353 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:41,375 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:55:01] 2025-07-27 21:54:42,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:55:01] 2025-07-27 21:54:43,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140004725389120)>', '<ExcThread(monitor, started 140003787142912)>']
[2025-07-27 17:55:01] 2025-07-27 21:54:48,873 | INFO     | all workflow threads have been joined
[2025-07-27 17:55:01] 2025-07-27 21:54:48,873 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:55:01] 2025-07-27 21:54:48,873 | INFO     | traces error code: 0
[2025-07-27 17:55:01] 2025-07-27 21:54:48,874 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:55:01] 2025-07-27 21:55:00,627 | INFO     | PID=699600 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:55:01] 2025-07-27 21:55:00,628 | INFO     | .. there are 12 such processes running
[2025-07-27 17:55:01] 2025-07-27 21:55:00,628 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:55:01] 2025-07-27 21:55:00,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:55:01] 2025-07-27 21:55:00,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:55:01] 2025-07-27 21:55:00,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:55:01] 2025-07-27 21:55:00,629 | INFO     | [monitor] control thread has ended
[2025-07-27 17:55:01] 2025-07-27 21:55:00,855 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:55:01] 2025-07-27 21:55:00,859 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:55:01] 2025-07-27 21:55:00,862 [wrapper] pilotpid: 699600
[2025-07-27 17:55:01] 2025-07-27 21:55:00,864 [wrapper] Pilot exit status: 0
[2025-07-27 17:55:01] 2025-07-27 21:55:00,881 [wrapper] pandaids: 6747412914
[2025-07-27 17:55:01] 2025-07-27 21:55:00,956 [wrapper] cleanup supervisor_pilot  893568 699601
[2025-07-27 17:55:01] 2025-07-27 21:55:00,961 [wrapper] Test setup, not cleaning
[2025-07-27 17:55:01] 2025-07-27 21:55:00,965 [wrapper] apfmon messages muted
[2025-07-27 17:55:01] 2025-07-27 21:55:00,969 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:55:01] 2025-07-27 21:55:00,972 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:55:01]  *** Error codes and diagnostics ***
[2025-07-27 17:55:01]     "exeErrorCode": 0,
[2025-07-27 17:55:01]     "exeErrorDiag": "",
[2025-07-27 17:55:01]     "pilotErrorCode": 0,
[2025-07-27 17:55:01]     "pilotErrorDiag": "",
[2025-07-27 17:55:01]  *** Listing of results directory ***
[2025-07-27 17:55:01] total 432908
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:13 queuedata.json
[2025-07-27 17:55:01] -rwx------. 1 boincer umatlas     36292 Jul 27 10:15 runpilot2-wrapper.sh
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:55:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:41 run_atlas
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:41 job.xml
[2025-07-27 17:55:01] -rw-r--r--. 2 boincer umatlas 228182311 Jul 27 16:41 EVNT.45743347._002767.pool.root.1
[2025-07-27 17:55:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:41 start_atlas.sh
[2025-07-27 17:55:01] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:41 shared
[2025-07-27 17:55:01] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 16:41 input.tar.gz
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:41 boinc_lockfile
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:41 pandaJob.out
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas    980109 Jul 27 16:41 agis_schedconf.cvmfs.json
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:41 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:55:01] drwx------. 4 boincer umatlas      4096 Jul 27 16:41 pilot3
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas 209611382 Jul 27 17:53 HITS.45743349._049797.pool.root.1
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:53 boinc_task_state.xml
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 17:54 init_data.xml
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas      1034 Jul 27 17:54 memory_monitor_summary.json
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas        95 Jul 27 17:54 pilot_heartbeat.json
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas    379954 Jul 27 17:54 log.45743349._049797.job.log.tgz.1
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas      7825 Jul 27 17:54 heartbeat.json
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:54 wrapper_checkpoint.txt
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas       822 Jul 27 17:55 pilotlog.txt
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas    437307 Jul 27 17:55 log.45743349._049797.job.log.1
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas       357 Jul 27 17:55 output.list
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:55 runtime_log
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas    839680 Jul 27 17:55 result.tar.gz
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas       654 Jul 27 17:55 ZvkNDmeKH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBVVLDm2euejm.diag
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 17:55 runtime_log.err
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:55 boinc_mmap_file
[2025-07-27 17:55:01] -rw-r--r--. 1 boincer umatlas     21818 Jul 27 17:55 stderr.txt
[2025-07-27 17:55:01] HITS file was successfully produced:
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas 209611382 Jul 27 17:53 shared/HITS.pool.root.1
[2025-07-27 17:55:01]  *** Contents of shared directory: ***
[2025-07-27 17:55:01] total 428904
[2025-07-27 17:55:01] -rw-r--r--. 2 boincer umatlas 228182311 Jul 27 16:41 ATLAS.root_0
[2025-07-27 17:55:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:41 start_atlas.sh
[2025-07-27 17:55:01] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 16:41 input.tar.gz
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas 209611382 Jul 27 17:53 HITS.pool.root.1
[2025-07-27 17:55:01] -rw-------. 1 boincer umatlas    839680 Jul 27 17:55 result.tar.gz
17:55:03 (694971): run_atlas exited; CPU time 45372.640690
17:55:03 (694971): called boinc_finish(0)

</stderr_txt>
]]>

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