Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:09:44 (2314353): wrapper (7.7.26015): starting
15:09:44 (2314353): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:09:44] Arguments: --nthreads 8
[2025-07-27 15:09:44] Threads: 8
[2025-07-27 15:09:44] Checking for CVMFS
[2025-07-27 15:09:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:09:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:09:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:09:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:09:45] 2.13.1.0 672044 14558 148148 148821 1 196 24517877 40960000 10364 16776704 0 45212386 99.884 26265279 43595 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:09:45] CVMFS is ok
[2025-07-27 15:09:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:09:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:09:45] Further information can be found at the LHC@home message board.
[2025-07-27 15:09:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:09:45] Checking for apptainer binary...
[2025-07-27 15:09:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:09:45] Running /usr/bin/apptainer --version
[2025-07-27 15:09:45] apptainer version 1.4.1-1.el9
[2025-07-27 15:09:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:09:45] c-212-3.aglt2.org
[2025-07-27 15:09:45] apptainer works
[2025-07-27 15:09:45] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:09:45] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:09:45] Starting ATLAS job with PandaID=6744843500
[2025-07-27 15:09:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:31:16]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:31:16]  scope=mc23_13p6TeV
[2025-07-27 16:31:16]  status=None
[2025-07-27 16:31:16]  status_code=0
[2025-07-27 16:31:16]  storage_token=
[2025-07-27 16:31:16]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6744843500/log.45743349._003056.job.log.tgz.1
[2025-07-27 16:31:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/6c/log.45743349._003056.job.log.tgz.1
[2025-07-27 16:31:16]  workdir=None
[2025-07-27 16:31:16] ]
[2025-07-27 16:31:16] 2025-07-27 20:30:35,809 | INFO     | transferring file log.45743349._003056.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6744843500/log.45743349._003056.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-27 16:31:16] 2025-07-27 20:30:35,810 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6744843500/log.45743349._003056.job.log.tgz.1 /tmp/boinchome/slots/10/log.45743349._003056.j
[2025-07-27 16:31:16] 2025-07-27 20:30:35,844 | INFO     | adding to output.list: log.45743349._003056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/6c/log.45743349._003056.job.log.tg
[2025-07-27 16:31:16] 2025-07-27 20:30:35,845 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:31:16] 2025-07-27 20:30:35,845 | INFO     | summary of transferred files:
[2025-07-27 16:31:16] 2025-07-27 20:30:35,845 | INFO     |  -- lfn=log.45743349._003056.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:31:16] 2025-07-27 20:30:35,845 | INFO     | stage-out finished correctly
[2025-07-27 16:31:16] 2025-07-27 20:30:36,177 | INFO     | monitor loop #354: job 0:6744843500 is in state 'finished'
[2025-07-27 16:31:16] 2025-07-27 20:30:36,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:31:16] 2025-07-27 20:30:38,420 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:31:16] 2025-07-27 20:30:38,682 | INFO     | monitor loop #355: job 0:6744843500 is in state 'finished'
[2025-07-27 16:31:16] 2025-07-27 20:30:38,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:31:16] 2025-07-27 20:30:38,831 | INFO     | job 6744843500 has state=finished
[2025-07-27 16:31:16] 2025-07-27 20:30:38,832 | INFO     | preparing for final server update for job 6744843500 in state='finished'
[2025-07-27 16:31:16] 2025-07-27 20:30:38,898 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 16:31:16] 2025-07-27 20:30:38,899 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:31:16] 2025-07-27 20:30:38,900 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:31:16] 2025-07-27 20:30:38,900 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:31:16] 2025-07-27 20:30:38,900 | INFO     | job 6744843500 has finished - writing final server update
[2025-07-27 16:31:16] 2025-07-27 20:30:38,900 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:31:16] 2025-07-27 20:30:38,901 | INFO     | executing command: lscpu
[2025-07-27 16:31:16] 2025-07-27 20:30:38,973 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:31:16] 2025-07-27 20:30:41,187 | INFO     | monitor loop #356: job 0:6744843500 is in state 'finished'
[2025-07-27 16:31:16] 2025-07-27 20:30:41,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,693 | INFO     | monitor loop #357: job 0:6744843500 is in state 'finished'
[2025-07-27 16:31:16] 2025-07-27 20:30:43,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,751 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:31:16] 2025-07-27 20:30:43,756 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3286.9466250000023
[2025-07-27 16:31:16] 2025-07-27 20:30:43,769 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6744843500/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,770 | INFO     | extracted standard info from prmon json
[2025-07-27 16:31:16] 2025-07-27 20:30:43,770 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:31:16] 2025-07-27 20:30:43,770 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:31:16] 2025-07-27 20:30:43,770 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:31:16] 2025-07-27 20:30:43,770 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:31:16] 2025-07-27 20:30:43,772 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:31:16] 2025-07-27 20:30:43,772 | INFO     | sum of square deviations: 115715658.0
[2025-07-27 16:31:16] 2025-07-27 20:30:43,772 | INFO     | sum of deviations: 1162214821.9999998
[2025-07-27 16:31:16] 2025-07-27 20:30:43,772 | INFO     | mean x: 1753645898.5
[2025-07-27 16:31:16] 2025-07-27 20:30:43,772 | INFO     | mean y: 2509860.972222222
[2025-07-27 16:31:16] 2025-07-27 20:30:43,773 | INFO     | -- intersect: -17610605693.157948
[2025-07-27 16:31:16] 2025-07-27 20:30:43,773 | INFO     | intersect: -17610605693.157948
[2025-07-27 16:31:16] 2025-07-27 20:30:43,773 | INFO     | chi2: 0.0019708818622767186
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | -- intersect: -17610605693.157948
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | current memory leak: 10.04 B/s (using 72 data points, chi2=0.00)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | could have reported an average CPU frequency of 3294 MHz (6 samples)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | ..............................
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | . Timing measurements:
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | . get job = 0 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | . initial setup = 2 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | . payload setup = 7 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,774 | INFO     | . stage-in = 0 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,775 | INFO     | . payload execution = 4809 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,775 | INFO     | . stage-out = 0 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,775 | INFO     | . log creation = 0 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,775 | INFO     | ..............................
[2025-07-27 16:31:16] 2025-07-27 20:30:43,862 | INFO     | 
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | job summary report
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | --------------------------------------------------
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | PanDA job id: 6744843500
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | task id: 45743349
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | errors: (none)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:31:16] 2025-07-27 20:30:43,863 | INFO     | pilot state: finished 
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | transexitcode: 0
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | exeerrorcode: 0
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | exeerrordiag: 
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | exitcode: 0
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | exitmsg: OK
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | cpuconsumptiontime: 34432 s
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | nevents: 400
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | neventsw: 0
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | pid: 2325708
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | pgrp: 2325708
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | corecount: 8
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | event service: False
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | sizes: {0: 2397468, 6: 2397730, 11: 2397758, 4821: 2423895, 4822: 2432895, 4824: 2432951, 4830: 2433273}
[2025-07-27 16:31:16] 2025-07-27 20:30:43,864 | INFO     | --------------------------------------------------
[2025-07-27 16:31:16] 2025-07-27 20:30:43,865 | INFO     | 
[2025-07-27 16:31:16] 2025-07-27 20:30:43,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-27 16:31:16] 2025-07-27 20:30:43,894 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,895 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,895 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,895 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,895 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,895 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,895 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,896 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:31:16] 2025-07-27 20:30:43,897 | INFO     | job 6744843500 has completed (purged errors)
[2025-07-27 16:31:16] 2025-07-27 20:30:43,897 | INFO     | overall cleanup function is called
[2025-07-27 16:31:16] 2025-07-27 20:30:44,906 | INFO     | --- collectZombieJob: --- 10, [2325708]
[2025-07-27 16:31:16] 2025-07-27 20:30:44,906 | INFO     | zombie collector waiting for pid 2325708
[2025-07-27 16:31:16] 2025-07-27 20:30:44,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:31:16] 2025-07-27 20:30:44,906 | INFO     | collected zombie processes
[2025-07-27 16:31:16] 2025-07-27 20:30:44,906 | INFO     | will attempt to kill all subprocesses of pid=2325708
[2025-07-27 16:31:16] 2025-07-27 20:30:45,261 | INFO     | process IDs to be killed: [2325708] (in reverse order)
[2025-07-27 16:31:16] 2025-07-27 20:30:45,377 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:31:16] 2025-07-27 20:30:45,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:31:16] 2025-07-27 20:30:45,397 | INFO     | did not find any defunct processes belonging to 2325708
[2025-07-27 16:31:16] 2025-07-27 20:30:45,410 | INFO     | did not find any defunct processes belonging to 2325708
[2025-07-27 16:31:16] 2025-07-27 20:30:45,410 | INFO     | ready for new job
[2025-07-27 16:31:16] 2025-07-27 20:30:45,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:31:16] 2025-07-27 20:30:45,411 | INFO     | ***************************************
[2025-07-27 16:31:16] 2025-07-27 20:30:45,412 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:31:16] 2025-07-27 20:30:45,412 | INFO     | ***************************************
[2025-07-27 16:31:16] 2025-07-27 20:30:45,412 | INFO     | 
[2025-07-27 16:31:16] 2025-07-27 20:30:45,417 | INFO     | architecture information:
[2025-07-27 16:31:16] 2025-07-27 20:30:45,418 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:31:16] 2025-07-27 20:30:45,433 | INFO     | cat /etc/os-release:
[2025-07-27 16:31:16] NAME="CentOS Linux"
[2025-07-27 16:31:16] VERSION="7 (Core)"
[2025-07-27 16:31:16] ID="centos"
[2025-07-27 16:31:16] ID_LIKE="rhel fedora"
[2025-07-27 16:31:16] VERSION_ID="7"
[2025-07-27 16:31:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:31:16] ANSI_COLOR="0;31"
[2025-07-27 16:31:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:31:16] HOME_URL="https://www.centos.org/"
[2025-07-27 16:31:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:31:16] 
[2025-07-27 16:31:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:31:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:31:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:31:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:31:16] 
[2025-07-27 16:31:16] 2025-07-27 20:30:45,433 | INFO     | ***************************************
[2025-07-27 16:31:16] 2025-07-27 20:30:45,936 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-27 16:31:16] 2025-07-27 20:30:45,970 | INFO     | sufficient remaining disk space (124179709952 B)
[2025-07-27 16:31:16] 2025-07-27 20:30:45,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:31:16] 2025-07-27 20:30:45,970 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:31:16] 2025-07-27 20:30:45,970 | INFO     | update_server=False
[2025-07-27 16:31:16] 2025-07-27 20:30:45,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:31:16] 2025-07-27 20:30:46,201 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 16:31:16] 2025-07-27 20:30:46,201 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 16:31:16] 2025-07-27 20:30:46,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:31:16] 2025-07-27 20:30:46,201 | INFO     | will abort loop
[2025-07-27 16:31:16] 2025-07-27 20:30:46,391 | INFO     | all job control threads have been joined
[2025-07-27 16:31:16] 2025-07-27 20:30:46,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:31:16] 2025-07-27 20:30:46,558 | INFO     | all data control threads have been joined
[2025-07-27 16:31:16] 2025-07-27 20:30:46,792 | INFO     | all payload control threads have been joined
[2025-07-27 16:31:16] 2025-07-27 20:30:46,975 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,095 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,207 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,310 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,345 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,398 | INFO     | [job] control thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,421 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,510 | INFO     | [job] validate thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,565 | INFO     | [data] control thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,658 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:47,797 | INFO     | [payload] control thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:48,003 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:48,519 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:48,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:31:16] 2025-07-27 20:30:49,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:31:16] 2025-07-27 20:30:49,881 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:53,036 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:56,141 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:31:16] 2025-07-27 20:30:57,146 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:31:16] 2025-07-27 20:30:59,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421275178816)>', '<ExcThread(monitor, started 140420759660288)>']
[2025-07-27 16:31:16] 2025-07-27 20:31:04,145 | INFO     | all workflow threads have been joined
[2025-07-27 16:31:16] 2025-07-27 20:31:04,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:31:16] 2025-07-27 20:31:04,145 | INFO     | traces error code: 0
[2025-07-27 16:31:16] 2025-07-27 20:31:04,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:31:16] 2025-07-27 20:31:15,644 | INFO     | PID=2317936 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:31:16] 2025-07-27 20:31:15,645 | INFO     | .. there are 14 such processes running
[2025-07-27 16:31:16] 2025-07-27 20:31:15,645 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:31:16] 2025-07-27 20:31:15,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:31:16] 2025-07-27 20:31:15,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:31:16] 2025-07-27 20:31:15,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:31:16] 2025-07-27 20:31:15,645 | INFO     | [monitor] control thread has ended
[2025-07-27 16:31:16] 2025-07-27 20:31:15,835 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:31:16] 2025-07-27 20:31:15,840 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:31:16] 2025-07-27 20:31:15,843 [wrapper] pilotpid: 2317936
[2025-07-27 16:31:16] 2025-07-27 20:31:15,846 [wrapper] Pilot exit status: 0
[2025-07-27 16:31:16] 2025-07-27 20:31:15,862 [wrapper] pandaids: 6744843500
[2025-07-27 16:31:16] 2025-07-27 20:31:15,939 [wrapper] cleanup supervisor_pilot 2617747 2317937
[2025-07-27 16:31:16] 2025-07-27 20:31:15,944 [wrapper] Test setup, not cleaning
[2025-07-27 16:31:16] 2025-07-27 20:31:15,947 [wrapper] apfmon messages muted
[2025-07-27 16:31:16] 2025-07-27 20:31:15,949 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:31:16] 2025-07-27 20:31:15,953 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:31:16]  *** Error codes and diagnostics ***
[2025-07-27 16:31:16]     "exeErrorCode": 0,
[2025-07-27 16:31:16]     "exeErrorDiag": "",
[2025-07-27 16:31:16]     "pilotErrorCode": 0,
[2025-07-27 16:31:16]     "pilotErrorDiag": "",
[2025-07-27 16:31:16]  *** Listing of results directory ***
[2025-07-27 16:31:16] total 431452
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 13:03 pilot3.tar.gz
[2025-07-27 16:31:16] -rwx------. 1 boincer umatlas     36292 Jul 24 13:21 runpilot2-wrapper.sh
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 13:21 queuedata.json
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:31:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:09 run_atlas
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:09 job.xml
[2025-07-27 16:31:16] -rw-r--r--. 2 boincer umatlas 229748071 Jul 27 15:09 EVNT.45743347._000169.pool.root.1
[2025-07-27 16:31:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:09 start_atlas.sh
[2025-07-27 16:31:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:09 shared
[2025-07-27 16:31:16] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 15:09 input.tar.gz
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:09 boinc_lockfile
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas      2559 Jul 27 15:09 pandaJob.out
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas    980125 Jul 27 15:09 agis_schedconf.cvmfs.json
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:09 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:31:16] drwx------. 4 boincer umatlas      4096 Jul 27 15:09 pilot3
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas      6946 Jul 27 16:28 init_data.xml
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas 206644356 Jul 27 16:30 HITS.45743349._003056.pool.root.1
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:30 boinc_task_state.xml
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas      1027 Jul 27 16:30 memory_monitor_summary.json
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas    295571 Jul 27 16:30 log.45743349._003056.job.log.tgz.1
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas        95 Jul 27 16:30 pilot_heartbeat.json
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas      7762 Jul 27 16:30 heartbeat.json
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:31 boinc_mmap_file
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:31 wrapper_checkpoint.txt
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas       823 Jul 27 16:31 pilotlog.txt
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas    474631 Jul 27 16:31 log.45743349._003056.job.log.1
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas       357 Jul 27 16:31 output.list
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:31 runtime_log
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas    788480 Jul 27 16:31 result.tar.gz
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas       650 Jul 27 16:31 y0XNDmKoEz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3hMLDmNXbDRn.diag
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas      8669 Jul 27 16:31 runtime_log.err
[2025-07-27 16:31:16] -rw-r--r--. 1 boincer umatlas     21957 Jul 27 16:31 stderr.txt
[2025-07-27 16:31:16] HITS file was successfully produced:
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas 206644356 Jul 27 16:30 shared/HITS.pool.root.1
[2025-07-27 16:31:16]  *** Contents of shared directory: ***
[2025-07-27 16:31:16] total 427492
[2025-07-27 16:31:16] -rw-r--r--. 2 boincer umatlas 229748071 Jul 27 15:09 ATLAS.root_0
[2025-07-27 16:31:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:09 start_atlas.sh
[2025-07-27 16:31:16] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 15:09 input.tar.gz
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas 206644356 Jul 27 16:30 HITS.pool.root.1
[2025-07-27 16:31:16] -rw-------. 1 boincer umatlas    788480 Jul 27 16:31 result.tar.gz
16:31:18 (2314353): run_atlas exited; CPU time 34548.918694
16:31:18 (2314353): called boinc_finish(0)

</stderr_txt>
]]>

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