Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:06:43 (11855): wrapper (7.7.26015): starting
15:06:43 (11855): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:06:43] Arguments: --nthreads 8
[2025-07-27 15:06:43] Threads: 8
[2025-07-27 15:06:43] Checking for CVMFS
[2025-07-27 15:06:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:06:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:06:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:06:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:06:44] 2.11.2.0 2839 112400 75744 148821 3 59 11592465 20275200 1 130560 0 29568079 99.961 10055494 10411 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:06:44] CVMFS is ok
[2025-07-27 15:06:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:06:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:06:44] Further information can be found at the LHC@home message board.
[2025-07-27 15:06:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:06:44] Checking for apptainer binary...
[2025-07-27 15:06:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:06:44] Running /usr/bin/apptainer --version
[2025-07-27 15:06:44] apptainer version 1.3.2-1.el7
[2025-07-27 15:06:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:06:46] c-204-19.aglt2.org
[2025-07-27 15:06:46] apptainer works
[2025-07-27 15:06:46] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:06:46] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:06:46] Starting ATLAS job with PandaID=6747412556
[2025-07-27 15:06:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:09:52 (6115): wrapper (7.7.26015): starting
16:09:52 (6115): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 16:09:52] Arguments: --nthreads 8
[2025-07-27 16:09:52] Threads: 8
[2025-07-27 16:09:52] This job has been restarted, cleaning up previous attempt
[2025-07-27 16:09:52] Checking for CVMFS
[2025-07-27 16:09:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:09:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:09:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:09:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:09:53] 2.11.2.0 2839 112463 75184 148822 0 18 11595645 20275200 1 130560 0 29636362 99.961 10056795 10412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 16:09:53] CVMFS is ok
[2025-07-27 16:09:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:09:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:09:53] Further information can be found at the LHC@home message board.
[2025-07-27 16:09:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:09:53] Checking for apptainer binary...
[2025-07-27 16:09:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:09:53] Running /usr/bin/apptainer --version
[2025-07-27 16:09:53] apptainer version 1.3.2-1.el7
[2025-07-27 16:09:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:09:54] c-204-19.aglt2.org
[2025-07-27 16:09:54] apptainer works
[2025-07-27 16:09:54] Set ATHENA_PROC_NUMBER=8
[2025-07-27 16:09:54] Set ATHENA_CORE_NUMBER=8
[2025-07-27 16:09:54] Starting ATLAS job with PandaID=6747412556
[2025-07-27 16:09:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:33:32]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:33:32] 2025-07-27 22:32:58,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:33:32] 2025-07-27 22:32:58,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:33:32] 2025-07-27 22:32:58,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:33:32] 2025-07-27 22:32:58,795 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:33:32] 2025-07-27 22:32:58,795 | INFO     | sum of square deviations: 850825255.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,796 | INFO     | sum of deviations: 14615191788.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,796 | INFO     | mean x: 1753651283.5
[2025-07-27 18:33:32] 2025-07-27 22:32:58,796 | INFO     | mean y: 2492030.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,796 | INFO     | -- intersect: -30121143448.62112
[2025-07-27 18:33:32] 2025-07-27 22:32:58,797 | INFO     | intersect: -30121143448.62112
[2025-07-27 18:33:32] 2025-07-27 22:32:58,797 | INFO     | chi2: 1.3983604856278313
[2025-07-27 18:33:32] 2025-07-27 22:32:58,797 | INFO     | sum of square deviations: 762879420.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,798 | INFO     | sum of deviations: 14340672999.999998
[2025-07-27 18:33:32] 2025-07-27 22:32:58,798 | INFO     | mean x: 1753651131.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,798 | INFO     | mean y: 2491553.7925925925
[2025-07-27 18:33:32] 2025-07-27 22:32:58,798 | INFO     | -- intersect: -32962793347.655083
[2025-07-27 18:33:32] 2025-07-27 22:32:58,798 | INFO     | intersect: -32962793347.655083
[2025-07-27 18:33:32] 2025-07-27 22:32:58,799 | INFO     | chi2: 1.3997116181023581
[2025-07-27 18:33:32] 2025-07-27 22:32:58,799 | INFO     | current chi2=1.3997116181023581 (change=-0.0966226154424091 %)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,799 | INFO     | right removable region: 134
[2025-07-27 18:33:32] 2025-07-27 22:32:58,799 | INFO     | sum of square deviations: 762879420.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,800 | INFO     | sum of deviations: -6288694350.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,800 | INFO     | mean x: 1753651436.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,800 | INFO     | mean y: 2527730.0814814814
[2025-07-27 18:33:32] 2025-07-27 22:32:58,800 | INFO     | -- intersect: 14458518530.62318
[2025-07-27 18:33:32] 2025-07-27 22:32:58,801 | INFO     | intersect: 14458518530.62318
[2025-07-27 18:33:32] 2025-07-27 22:32:58,801 | INFO     | chi2: 0.013345239556354374
[2025-07-27 18:33:32] 2025-07-27 22:32:58,801 | INFO     | current chi2=0.013345239556354374 (change=99.04565098245301 %)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,801 | INFO     | sum of square deviations: 681212772.5
[2025-07-27 18:33:32] 2025-07-27 22:32:58,802 | INFO     | sum of deviations: -6951188601.5
[2025-07-27 18:33:32] 2025-07-27 22:32:58,802 | INFO     | mean x: 1753651588.5
[2025-07-27 18:33:32] 2025-07-27 22:32:58,802 | INFO     | mean y: 2528947.0384615385
[2025-07-27 18:33:32] 2025-07-27 22:32:58,802 | INFO     | -- intersect: 17897030379.017365
[2025-07-27 18:33:32] 2025-07-27 22:32:58,802 | INFO     | intersect: 17897030379.017365
[2025-07-27 18:33:32] 2025-07-27 22:32:58,803 | INFO     | chi2: 0.009055475849575204
[2025-07-27 18:33:32] 2025-07-27 22:32:58,803 | INFO     | current chi2=0.009055475849575204 (change=32.14452381063918 %)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,803 | INFO     | sum of square deviations: 605592750.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | sum of deviations: -6712554985.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | mean x: 1753651741.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | mean y: 2528463.112
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | -- intersect: 19440481998.723976
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | intersect: 19440481998.723976
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | chi2: 0.008400679417335277
[2025-07-27 18:33:32] 2025-07-27 22:32:58,804 | INFO     | current chi2=0.008400679417335277 (change=7.230944492780507 %)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,805 | INFO     | left removable region: 30
[2025-07-27 18:33:32] 2025-07-27 22:32:58,805 | INFO     | sum of square deviations: 348769330.0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,805 | INFO     | sum of deviations: -4751283564.5
[2025-07-27 18:33:32] 2025-07-27 22:32:58,805 | INFO     | mean x: 1753652015.5
[2025-07-27 18:33:32] 2025-07-27 22:32:58,806 | INFO     | mean y: 2525801.4134615385
[2025-07-27 18:33:32] 2025-07-27 22:32:58,806 | INFO     | -- intersect: 23892522089.49719
[2025-07-27 18:33:32] 2025-07-27 22:32:58,806 | INFO     | intersect: 23892522089.49719
[2025-07-27 18:33:32] 2025-07-27 22:32:58,806 | INFO     | chi2: 0.007308373419310131
[2025-07-27 18:33:32] 2025-07-27 22:32:58,806 | INFO     | -- intersect: 23892522089.49719
[2025-07-27 18:33:32] 2025-07-27 22:32:58,806 | INFO     | current memory leak: -13.62 B/s (using 104 data points, chi2=0.01)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | could have reported an average CPU frequency of 1995 MHz (8 samples)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | ..............................
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | . Timing measurements:
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | . get job = 0 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | . initial setup = 1 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | . payload setup = 12 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,807 | INFO     | . stage-in = 0 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,808 | INFO     | . payload execution = 8523 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,808 | INFO     | . stage-out = 2 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,808 | INFO     | . log creation = 0 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,808 | INFO     | ..............................
[2025-07-27 18:33:32] 2025-07-27 22:32:58,904 | INFO     | 
[2025-07-27 18:33:32] 2025-07-27 22:32:58,904 | INFO     | job summary report
[2025-07-27 18:33:32] 2025-07-27 22:32:58,904 | INFO     | --------------------------------------------------
[2025-07-27 18:33:32] 2025-07-27 22:32:58,904 | INFO     | PanDA job id: 6747412556
[2025-07-27 18:33:32] 2025-07-27 22:32:58,905 | INFO     | task id: 45743349
[2025-07-27 18:33:32] 2025-07-27 22:32:58,905 | INFO     | errors: (none)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,905 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:33:32] 2025-07-27 22:32:58,905 | INFO     | pilot state: finished 
[2025-07-27 18:33:32] 2025-07-27 22:32:58,905 | INFO     | transexitcode: 0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,905 | INFO     | exeerrorcode: 0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,906 | INFO     | exeerrordiag: 
[2025-07-27 18:33:32] 2025-07-27 22:32:58,906 | INFO     | exitcode: 0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,906 | INFO     | exitmsg: OK
[2025-07-27 18:33:32] 2025-07-27 22:32:58,906 | INFO     | cpuconsumptiontime: 64403 s
[2025-07-27 18:33:32] 2025-07-27 22:32:58,906 | INFO     | nevents: 400
[2025-07-27 18:33:32] 2025-07-27 22:32:58,906 | INFO     | neventsw: 0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,907 | INFO     | pid: 16329
[2025-07-27 18:33:32] 2025-07-27 22:32:58,907 | INFO     | pgrp: 16329
[2025-07-27 18:33:32] 2025-07-27 22:32:58,907 | INFO     | corecount: 8
[2025-07-27 18:33:32] 2025-07-27 22:32:58,907 | INFO     | event service: False
[2025-07-27 18:33:32] 2025-07-27 22:32:58,907 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 8538: 2425649, 8539: 2425648, 8543: 2434702, 8546: 2434886, 8552: 2435080}
[2025-07-27 18:33:32] 2025-07-27 22:32:58,908 | INFO     | --------------------------------------------------
[2025-07-27 18:33:32] 2025-07-27 22:32:58,908 | INFO     | 
[2025-07-27 18:33:32] 2025-07-27 22:32:58,908 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:33:32] 2025-07-27 22:32:58,936 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,936 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,936 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,937 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,937 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,937 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,939 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:33:32] 2025-07-27 22:32:58,940 | INFO     | job 6747412556 has completed (purged errors)
[2025-07-27 18:33:32] 2025-07-27 22:32:58,940 | INFO     | overall cleanup function is called
[2025-07-27 18:33:32] 2025-07-27 22:32:59,630 | INFO     | PID=9912 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 18:33:32] 2025-07-27 22:32:59,948 | INFO     | --- collectZombieJob: --- 10, [16329]
[2025-07-27 18:33:32] 2025-07-27 22:32:59,948 | INFO     | zombie collector waiting for pid 16329
[2025-07-27 18:33:32] 2025-07-27 22:32:59,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:33:32] 2025-07-27 22:32:59,949 | INFO     | collected zombie processes
[2025-07-27 18:33:32] 2025-07-27 22:32:59,949 | INFO     | will attempt to kill all subprocesses of pid=16329
[2025-07-27 18:33:32] 2025-07-27 22:33:00,036 | INFO     | process IDs to be killed: [16329] (in reverse order)
[2025-07-27 18:33:32] 2025-07-27 22:33:00,097 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:33:32] 2025-07-27 22:33:00,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:33:32] 2025-07-27 22:33:00,101 | INFO     | did not find any defunct processes belonging to 16329
[2025-07-27 18:33:32] 2025-07-27 22:33:00,105 | INFO     | did not find any defunct processes belonging to 16329
[2025-07-27 18:33:32] 2025-07-27 22:33:00,105 | INFO     | ready for new job
[2025-07-27 18:33:32] 2025-07-27 22:33:00,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:33:32] 2025-07-27 22:33:00,107 | INFO     | ***************************************
[2025-07-27 18:33:32] 2025-07-27 22:33:00,107 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:33:32] 2025-07-27 22:33:00,108 | INFO     | ***************************************
[2025-07-27 18:33:32] 2025-07-27 22:33:00,108 | INFO     | 
[2025-07-27 18:33:32] 2025-07-27 22:33:00,108 | INFO     | architecture information:
[2025-07-27 18:33:32] 2025-07-27 22:33:00,109 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:33:32] 2025-07-27 22:33:00,128 | INFO     | cat /etc/os-release:
[2025-07-27 18:33:32] NAME="CentOS Linux"
[2025-07-27 18:33:32] VERSION="7 (Core)"
[2025-07-27 18:33:32] ID="centos"
[2025-07-27 18:33:32] ID_LIKE="rhel fedora"
[2025-07-27 18:33:32] VERSION_ID="7"
[2025-07-27 18:33:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:33:32] ANSI_COLOR="0;31"
[2025-07-27 18:33:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:33:32] HOME_URL="https://www.centos.org/"
[2025-07-27 18:33:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:33:32] 
[2025-07-27 18:33:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:33:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:33:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:33:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:33:32] 
[2025-07-27 18:33:32] 2025-07-27 22:33:00,128 | INFO     | ***************************************
[2025-07-27 18:33:32] 2025-07-27 22:33:00,629 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:33:32] 2025-07-27 22:33:00,651 | INFO     | sufficient remaining disk space (18540920832 B)
[2025-07-27 18:33:32] 2025-07-27 22:33:00,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:33:32] 2025-07-27 22:33:00,652 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:33:32] 2025-07-27 22:33:00,652 | INFO     | update_server=False
[2025-07-27 18:33:32] 2025-07-27 22:33:00,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:33:32] 2025-07-27 22:33:00,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:33:32] 2025-07-27 22:33:00,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:33:32] 2025-07-27 22:33:00,653 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:33:32] 2025-07-27 22:33:00,654 | INFO     | aborting loop
[2025-07-27 18:33:32] 2025-07-27 22:33:01,014 | INFO     | all data control threads have been joined
[2025-07-27 18:33:32] 2025-07-27 22:33:01,653 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:01,658 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:01,659 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:01,670 | INFO     | [job] validate thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:01,901 | INFO     | all payload control threads have been joined
[2025-07-27 18:33:32] 2025-07-27 22:33:01,915 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:01,943 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,019 | INFO     | [data] control thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,310 | INFO     | all job control threads have been joined
[2025-07-27 18:33:32] 2025-07-27 22:33:02,412 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,420 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,518 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,660 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,864 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:02,906 | INFO     | [payload] control thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:03,315 | INFO     | [job] control thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:03,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:33:32] 2025-07-27 22:33:07,542 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:11,321 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:33:32] 2025-07-27 22:33:12,323 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:33:32] 2025-07-27 22:33:13,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366611461952)>', '<ExcThread(monitor, started 140365864609536)>']
[2025-07-27 18:33:32] 2025-07-27 22:33:18,704 | INFO     | all workflow threads have been joined
[2025-07-27 18:33:32] 2025-07-27 22:33:18,704 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:33:32] 2025-07-27 22:33:18,705 | INFO     | traces error code: 0
[2025-07-27 18:33:32] 2025-07-27 22:33:18,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:33:32] 2025-07-27 22:33:31,846 | INFO     | PID=9912 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 18:33:32] 2025-07-27 22:33:31,847 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:33:32] 2025-07-27 22:33:31,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:33:32] 2025-07-27 22:33:31,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:33:32] 2025-07-27 22:33:31,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:33:32] 2025-07-27 22:33:31,848 | INFO     | [monitor] control thread has ended
[2025-07-27 18:33:32] 2025-07-27 22:33:31,963 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:33:32] 2025-07-27 22:33:31,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:33:32] 2025-07-27 22:33:31,973 [wrapper] pilotpid: 9912
[2025-07-27 18:33:32] 2025-07-27 22:33:31,977 [wrapper] Pilot exit status: 0
[2025-07-27 18:33:32] 2025-07-27 22:33:31,997 [wrapper] pandaids: 6747412556 6747412556
[2025-07-27 18:33:32] 2025-07-27 22:33:32,042 [wrapper] cleanup supervisor_pilot  7342 9913
[2025-07-27 18:33:32] 2025-07-27 22:33:32,047 [wrapper] Test setup, not cleaning
[2025-07-27 18:33:32] 2025-07-27 22:33:32,052 [wrapper] apfmon messages muted
[2025-07-27 18:33:32] 2025-07-27 22:33:32,056 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:33:32] 2025-07-27 22:33:32,061 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:33:32]  *** Error codes and diagnostics ***
[2025-07-27 18:33:32]     "exeErrorCode": 0,
[2025-07-27 18:33:32]     "exeErrorDiag": "",
[2025-07-27 18:33:32]     "pilotErrorCode": 0,
[2025-07-27 18:33:32]     "pilotErrorDiag": "",
[2025-07-27 18:33:32]  *** Listing of results directory ***
[2025-07-27 18:33:32] total 658532
[2025-07-27 18:33:32] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 09:42 pilot3.tar.gz
[2025-07-27 18:33:32] -rwx------ 1 boincer umatlas     36292 Jul 27 09:47 runpilot2-wrapper.sh
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 09:47 queuedata.json
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas       100 Jul 27 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:33:32] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 15:06 run_atlas
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas       105 Jul 27 15:06 job.xml
[2025-07-27 18:33:32] -rw-r--r-- 3 boincer umatlas 229617797 Jul 27 15:06 EVNT.45743347._002730.pool.root.1
[2025-07-27 18:33:32] -rw-r--r-- 3 boincer umatlas 229617797 Jul 27 15:06 ATLAS.root_0
[2025-07-27 18:33:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 15:06 start_atlas.sh
[2025-07-27 18:33:32] drwxrwx--x 2 boincer umatlas      4096 Jul 27 15:06 shared
[2025-07-27 18:33:32] -rw-r--r-- 2 boincer umatlas    542899 Jul 27 15:06 input.tar.gz
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas         0 Jul 27 15:06 boinc_lockfile
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 16:09 pandaJob.out
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas    980125 Jul 27 16:10 agis_schedconf.cvmfs.json
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas      5905 Jul 27 18:29 init_data.xml
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas 209001794 Jul 27 18:32 HITS.45743349._049476.pool.root.1
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas       530 Jul 27 18:32 boinc_task_state.xml
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas      1049 Jul 27 18:32 memory_monitor_summary.json
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas   1593052 Jul 27 18:32 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas    330022 Jul 27 18:32 log.45743349._049476.job.log.tgz.1
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas        28 Jul 27 18:32 wrapper_checkpoint.txt
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 18:32 boinc_mmap_file
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas      7849 Jul 27 18:32 heartbeat.json
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas        96 Jul 27 18:33 pilot_heartbeat.json
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas       744 Jul 27 18:33 pilotlog.txt
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas    777708 Jul 27 18:33 log.45743349._049476.job.log.1
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas       357 Jul 27 18:33 output.list
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas       620 Jul 27 18:33 runtime_log
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas   1126400 Jul 27 18:33 result.tar.gz
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas      8745 Jul 27 18:33 runtime_log.err
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas       786 Jul 27 18:33 6a8KDmQuG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3RVLDmL7x74m.diag
[2025-07-27 18:33:32] -rw-r--r-- 1 boincer umatlas     23126 Jul 27 18:33 stderr.txt
[2025-07-27 18:33:32] HITS file was successfully produced:
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas 209001794 Jul 27 18:32 shared/HITS.pool.root.1
[2025-07-27 18:33:32]  *** Contents of shared directory: ***
[2025-07-27 18:33:32] total 430000
[2025-07-27 18:33:32] -rw-r--r-- 3 boincer umatlas 229617797 Jul 27 15:06 ATLAS.root_0
[2025-07-27 18:33:32] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 15:06 start_atlas.sh
[2025-07-27 18:33:32] -rw-r--r-- 2 boincer umatlas    542899 Jul 27 15:06 input.tar.gz
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas 209001794 Jul 27 18:32 HITS.pool.root.1
[2025-07-27 18:33:32] -rw------- 1 boincer umatlas   1126400 Jul 27 18:33 result.tar.gz
18:33:33 (6115): run_atlas exited; CPU time 64338.256889
18:33:33 (6115): called boinc_finish(0)

</stderr_txt>
]]>

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