Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:05:06 (4004088): wrapper (7.7.26015): starting
15:05:06 (4004088): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 15:05:06] Arguments: --nthreads 8
[2025-07-27 15:05:06] Threads: 8
[2025-07-27 15:05:06] Checking for CVMFS
[2025-07-27 15:05:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:05:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:05:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:05:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:05:07] 2.13.1.0 681289 14542 168168 148821 1 433 22598506 40960000 14887 16776704 0 38093743 99.892 20509805 46628 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 15:05:07] CVMFS is ok
[2025-07-27 15:05:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:05:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:05:07] Further information can be found at the LHC@home message board.
[2025-07-27 15:05:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:05:07] Checking for apptainer binary...
[2025-07-27 15:05:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:05:07] Running /usr/bin/apptainer --version
[2025-07-27 15:05:07] apptainer version 1.4.1-1.el9
[2025-07-27 15:05:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:05:07] c-212-14.aglt2.org
[2025-07-27 15:05:07] apptainer works
[2025-07-27 15:05:07] Set ATHENA_PROC_NUMBER=8
[2025-07-27 15:05:07] Set ATHENA_CORE_NUMBER=8
[2025-07-27 15:05:07] Starting ATLAS job with PandaID=6747412312
[2025-07-27 15:05:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:32:24]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:32:24] 2025-07-27 20:31:39,213 | INFO     | adding to output.list: log.45743349._049414.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/d2/log.45743349._049414.job.log.tg
[2025-07-27 16:32:24] 2025-07-27 20:31:39,214 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:32:24] 2025-07-27 20:31:39,214 | INFO     | summary of transferred files:
[2025-07-27 16:32:24] 2025-07-27 20:31:39,214 | INFO     |  -- lfn=log.45743349._049414.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:32:24] 2025-07-27 20:31:39,214 | INFO     | stage-out finished correctly
[2025-07-27 16:32:24] 2025-07-27 20:31:41,232 | WARNING  | process 4014136 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:32:24] 2025-07-27 20:31:41,233 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747412312/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,234 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747412312/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,235 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3539579 B
[2025-07-27 16:32:24] 2025-07-27 20:31:41,235 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16018 B
[2025-07-27 16:32:24] 2025-07-27 20:31:41,235 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 16:32:24] 2025-07-27 20:31:41,266 | INFO     | sufficient remaining disk space (128765132800 B)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,266 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,267 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6747412312: 3841930 B (within 2537553920 B limit)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,267 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6747412312/HITS.45743349._049414.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,267 | INFO     | total size of present files: 0 B (workdir size: 3841930 B)
[2025-07-27 16:32:24] 2025-07-27 20:31:41,267 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6747412312/HITS.45743349._049414.pool.root.1 since it does not exist
[2025-07-27 16:32:24] 2025-07-27 20:31:41,671 | INFO     | number of running child processes to parent process 4014136: 1
[2025-07-27 16:32:24] 2025-07-27 20:31:41,672 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:32:24] 2025-07-27 20:31:41,714 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:32:24] 2025-07-27 20:31:44,175 | INFO     | monitor loop #376: job 0:6747412312 is in state 'finished'
[2025-07-27 16:32:24] 2025-07-27 20:31:44,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:32:24] 2025-07-27 20:31:44,436 | INFO     | job 6747412312 has state=finished
[2025-07-27 16:32:24] 2025-07-27 20:31:44,436 | INFO     | preparing for final server update for job 6747412312 in state='finished'
[2025-07-27 16:32:24] 2025-07-27 20:31:44,439 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:32:24] 2025-07-27 20:31:44,439 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:32:24] 2025-07-27 20:31:44,439 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:32:24] 2025-07-27 20:31:44,439 | INFO     | job 6747412312 has finished - writing final server update
[2025-07-27 16:32:24] 2025-07-27 20:31:44,439 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:32:24] 2025-07-27 20:31:44,441 | INFO     | executing command: lscpu
[2025-07-27 16:32:24] 2025-07-27 20:31:44,516 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:32:24] 2025-07-27 20:31:46,681 | INFO     | monitor loop #377: job 0:6747412312 is in state 'finished'
[2025-07-27 16:32:24] 2025-07-27 20:31:46,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:32:24] 2025-07-27 20:31:49,186 | INFO     | monitor loop #378: job 0:6747412312 is in state 'finished'
[2025-07-27 16:32:24] 2025-07-27 20:31:49,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,571 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:32:24] 2025-07-27 20:31:51,577 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2983.628322916668
[2025-07-27 16:32:24] 2025-07-27 20:31:51,591 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6747412312/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,592 | INFO     | extracted standard info from prmon json
[2025-07-27 16:32:24] 2025-07-27 20:31:51,592 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:32:24] 2025-07-27 20:31:51,592 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:32:24] 2025-07-27 20:31:51,594 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:32:24] 2025-07-27 20:31:51,594 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:32:24] 2025-07-27 20:31:51,596 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:32:24] 2025-07-27 20:31:51,596 | INFO     | sum of square deviations: 147126479.5
[2025-07-27 16:32:24] 2025-07-27 20:31:51,596 | INFO     | sum of deviations: -2079046194.4999993
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | mean x: 1753645811.5
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | mean y: 2537345.4743589745
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | -- intersect: 24783329105.668266
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | intersect: 24783329105.668266
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | chi2: 0.07182999922049192
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | -- intersect: 24783329105.668266
[2025-07-27 16:32:24] 2025-07-27 20:31:51,597 | INFO     | current memory leak: -14.13 B/s (using 78 data points, chi2=0.07)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | could have reported an average CPU frequency of 2988 MHz (6 samples)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | ..............................
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . Timing measurements:
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . get job = 0 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . initial setup = 2 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . payload setup = 10 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . stage-in = 0 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . payload execution = 5144 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . stage-out = 0 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,598 | INFO     | . log creation = 0 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,599 | INFO     | ..............................
[2025-07-27 16:32:24] 2025-07-27 20:31:51,693 | INFO     | 
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | job summary report
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | --------------------------------------------------
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | PanDA job id: 6747412312
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | task id: 45743349
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | errors: (none)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | pilot state: finished 
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | transexitcode: 0
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | exeerrorcode: 0
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | exeerrordiag: 
[2025-07-27 16:32:24] 2025-07-27 20:31:51,694 | INFO     | exitcode: 0
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | exitmsg: OK
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | cpuconsumptiontime: 36866 s
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | nevents: 400
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | neventsw: 0
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | pid: 4014136
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | pgrp: 4014136
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | corecount: 8
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | event service: False
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | sizes: {0: 2397424, 7: 2397686, 11: 2397714, 5158: 2423911, 5159: 2432909, 5162: 2432993, 5172: 2433315}
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | --------------------------------------------------
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | 
[2025-07-27 16:32:24] 2025-07-27 20:31:51,695 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 16:32:24] 2025-07-27 20:31:51,734 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,735 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,735 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,735 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,735 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,737 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,737 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:32:24] 2025-07-27 20:31:51,737 | INFO     | job 6747412312 has completed (purged errors)
[2025-07-27 16:32:24] 2025-07-27 20:31:51,737 | INFO     | overall cleanup function is called
[2025-07-27 16:32:24] 2025-07-27 20:31:52,747 | INFO     | --- collectZombieJob: --- 10, [4014136]
[2025-07-27 16:32:24] 2025-07-27 20:31:52,747 | INFO     | zombie collector waiting for pid 4014136
[2025-07-27 16:32:24] 2025-07-27 20:31:52,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:32:24] 2025-07-27 20:31:52,747 | INFO     | collected zombie processes
[2025-07-27 16:32:24] 2025-07-27 20:31:52,747 | INFO     | will attempt to kill all subprocesses of pid=4014136
[2025-07-27 16:32:24] 2025-07-27 20:31:53,145 | INFO     | process IDs to be killed: [4014136] (in reverse order)
[2025-07-27 16:32:24] 2025-07-27 20:31:53,271 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:32:24] 2025-07-27 20:31:53,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:32:24] 2025-07-27 20:31:53,293 | INFO     | did not find any defunct processes belonging to 4014136
[2025-07-27 16:32:24] 2025-07-27 20:31:53,312 | INFO     | did not find any defunct processes belonging to 4014136
[2025-07-27 16:32:24] 2025-07-27 20:31:53,312 | INFO     | ready for new job
[2025-07-27 16:32:24] 2025-07-27 20:31:53,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:32:24] 2025-07-27 20:31:53,314 | INFO     | ***************************************
[2025-07-27 16:32:24] 2025-07-27 20:31:53,315 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:32:24] 2025-07-27 20:31:53,315 | INFO     | ***************************************
[2025-07-27 16:32:24] 2025-07-27 20:31:53,315 | INFO     | 
[2025-07-27 16:32:24] 2025-07-27 20:31:53,321 | INFO     | architecture information:
[2025-07-27 16:32:24] 2025-07-27 20:31:53,321 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:32:24] 2025-07-27 20:31:53,349 | INFO     | cat /etc/os-release:
[2025-07-27 16:32:24] NAME="CentOS Linux"
[2025-07-27 16:32:24] VERSION="7 (Core)"
[2025-07-27 16:32:24] ID="centos"
[2025-07-27 16:32:24] ID_LIKE="rhel fedora"
[2025-07-27 16:32:24] VERSION_ID="7"
[2025-07-27 16:32:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:32:24] ANSI_COLOR="0;31"
[2025-07-27 16:32:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:32:24] HOME_URL="https://www.centos.org/"
[2025-07-27 16:32:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:32:24] 
[2025-07-27 16:32:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:32:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:32:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:32:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:32:24] 
[2025-07-27 16:32:24] 2025-07-27 20:31:53,352 | INFO     | ***************************************
[2025-07-27 16:32:24] 2025-07-27 20:31:53,855 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 16:32:24] 2025-07-27 20:31:53,888 | INFO     | sufficient remaining disk space (128768278528 B)
[2025-07-27 16:32:24] 2025-07-27 20:31:53,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:32:24] 2025-07-27 20:31:53,888 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:32:24] 2025-07-27 20:31:53,889 | INFO     | update_server=False
[2025-07-27 16:32:24] 2025-07-27 20:31:53,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:32:24] 2025-07-27 20:31:54,199 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 16:32:24] 2025-07-27 20:31:54,199 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 16:32:24] 2025-07-27 20:31:54,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:32:24] 2025-07-27 20:31:54,200 | INFO     | will abort loop
[2025-07-27 16:32:24] 2025-07-27 20:31:54,369 | INFO     | all data control threads have been joined
[2025-07-27 16:32:24] 2025-07-27 20:31:54,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:32:24] 2025-07-27 20:31:54,859 | INFO     | all job control threads have been joined
[2025-07-27 16:32:24] 2025-07-27 20:31:54,894 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:54,987 | INFO     | all payload control threads have been joined
[2025-07-27 16:32:24] 2025-07-27 20:31:55,200 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,206 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,374 | INFO     | [data] control thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,382 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,768 | INFO     | [job] validate thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,779 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,844 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,864 | INFO     | [job] control thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,924 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:55,994 | INFO     | [payload] control thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:56,208 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:56,335 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:56,704 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:32:24] 2025-07-27 20:31:56,804 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:32:24] 2025-07-27 20:31:56,838 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:31:57,709 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:32:00,810 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:32:24] 2025-07-27 20:32:01,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315132995392)>', '<ExcThread(monitor, started 140314484397824)>']
[2025-07-27 16:32:24] 2025-07-27 20:32:06,337 | INFO     | all workflow threads have been joined
[2025-07-27 16:32:24] 2025-07-27 20:32:06,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:32:24] 2025-07-27 20:32:06,337 | INFO     | traces error code: 0
[2025-07-27 16:32:24] 2025-07-27 20:32:06,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:32:24] 2025-07-27 20:32:24,197 | INFO     | PID=4007672 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:32:24] 2025-07-27 20:32:24,197 | INFO     | .. there are 15 such processes running
[2025-07-27 16:32:24] 2025-07-27 20:32:24,198 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:32:24] 2025-07-27 20:32:24,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:32:24] 2025-07-27 20:32:24,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:32:24] 2025-07-27 20:32:24,198 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:32:24] 2025-07-27 20:32:24,198 | INFO     | [monitor] control thread has ended
[2025-07-27 16:32:24] 2025-07-27 20:32:24,329 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:32:24] 2025-07-27 20:32:24,334 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:32:24] 2025-07-27 20:32:24,339 [wrapper] pilotpid: 4007672
[2025-07-27 16:32:24] 2025-07-27 20:32:24,343 [wrapper] Pilot exit status: 0
[2025-07-27 16:32:24] 2025-07-27 20:32:24,366 [wrapper] pandaids: 6747412312
[2025-07-27 16:32:24] 2025-07-27 20:32:24,470 [wrapper] cleanup supervisor_pilot 4170601 4007673
[2025-07-27 16:32:24] 2025-07-27 20:32:24,478 [wrapper] Test setup, not cleaning
[2025-07-27 16:32:24] 2025-07-27 20:32:24,484 [wrapper] apfmon messages muted
[2025-07-27 16:32:24] 2025-07-27 20:32:24,490 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:32:24] 2025-07-27 20:32:24,494 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:32:24]  *** Error codes and diagnostics ***
[2025-07-27 16:32:24]     "exeErrorCode": 0,
[2025-07-27 16:32:24]     "exeErrorDiag": "",
[2025-07-27 16:32:24]     "pilotErrorCode": 0,
[2025-07-27 16:32:24]     "pilotErrorDiag": "",
[2025-07-27 16:32:24]  *** Listing of results directory ***
[2025-07-27 16:32:24] total 431884
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 16:32:24] -rwx------. 1 boincer umatlas     36292 Jul 27 09:39 runpilot2-wrapper.sh
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:39 queuedata.json
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:32:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:05 run_atlas
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:05 job.xml
[2025-07-27 16:32:24] -rw-r--r--. 2 boincer umatlas 230201175 Jul 27 15:05 EVNT.45743347._002727.pool.root.1
[2025-07-27 16:32:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:05 start_atlas.sh
[2025-07-27 16:32:24] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:05 shared
[2025-07-27 16:32:24] -rw-r--r--. 2 boincer umatlas    542903 Jul 27 15:05 input.tar.gz
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:05 boinc_lockfile
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 15:05 pandaJob.out
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas    980125 Jul 27 15:05 agis_schedconf.cvmfs.json
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:05 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:32:24] drwx------. 4 boincer umatlas      4096 Jul 27 15:05 pilot3
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas      6944 Jul 27 16:27 init_data.xml
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas 206532633 Jul 27 16:31 HITS.45743349._049414.pool.root.1
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:31 boinc_task_state.xml
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas      1033 Jul 27 16:31 memory_monitor_summary.json
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas    317389 Jul 27 16:31 log.45743349._049414.job.log.tgz.1
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas      7775 Jul 27 16:31 heartbeat.json
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:32 wrapper_checkpoint.txt
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas        95 Jul 27 16:32 pilot_heartbeat.json
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas       823 Jul 27 16:32 pilotlog.txt
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas    499806 Jul 27 16:32 log.45743349._049414.job.log.1
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:32 boinc_mmap_file
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas       357 Jul 27 16:32 output.list
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:32 runtime_log
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas    839680 Jul 27 16:32 result.tar.gz
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 16:32 runtime_log.err
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas       652 Jul 27 16:32 EZSNDmQmG07n9Rq4apOajLDm4fhM0noT9bVof3QYDm0b2KDm8dtUHm.diag
[2025-07-27 16:32:24] -rw-r--r--. 1 boincer umatlas     22590 Jul 27 16:32 stderr.txt
[2025-07-27 16:32:24] HITS file was successfully produced:
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas 206532633 Jul 27 16:31 shared/HITS.pool.root.1
[2025-07-27 16:32:24]  *** Contents of shared directory: ***
[2025-07-27 16:32:24] total 427876
[2025-07-27 16:32:24] -rw-r--r--. 2 boincer umatlas 230201175 Jul 27 15:05 ATLAS.root_0
[2025-07-27 16:32:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:05 start_atlas.sh
[2025-07-27 16:32:24] -rw-r--r--. 2 boincer umatlas    542903 Jul 27 15:05 input.tar.gz
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas 206532633 Jul 27 16:31 HITS.pool.root.1
[2025-07-27 16:32:24] -rw-------. 1 boincer umatlas    839680 Jul 27 16:32 result.tar.gz
16:32:26 (4004088): run_atlas exited; CPU time 36990.477236
16:32:26 (4004088): called boinc_finish(0)

</stderr_txt>
]]>

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