Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:13:37 (3075981): wrapper (7.7.26015): starting
16:13:37 (3075981): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:13:37] Arguments: --nthreads 12
[2025-07-27 16:13:37] Threads: 12
[2025-07-27 16:13:37] Checking for CVMFS
[2025-07-27 16:13:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:13:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:13:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:13:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:13:38] 2.12.6.0 2794239 18831 324044 148822 1 414 28458542 40960000 5859 16776704 1 45640136 99.777 44484665 23570 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:13:38] CVMFS is ok
[2025-07-27 16:13:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:13:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:13:38] Further information can be found at the LHC@home message board.
[2025-07-27 16:13:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:13:38] Checking for apptainer binary...
[2025-07-27 16:13:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:13:38] Running /usr/bin/apptainer --version
[2025-07-27 16:13:38] apptainer version 1.4.1-1.el9
[2025-07-27 16:13:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:13:38] c6-8-12-4.aglt2.org
[2025-07-27 16:13:38] apptainer works
[2025-07-27 16:13:38] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:13:38] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:13:38] Starting ATLAS job with PandaID=6747412593
[2025-07-27 16:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:22:18]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:22:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-27 17:22:18]  is_altstaged=None
[2025-07-27 17:22:18]  is_tar=False
[2025-07-27 17:22:18]  lfn=log.45743349._049513.job.log.tgz.1
[2025-07-27 17:22:18]  mtime=0
[2025-07-27 17:22:18]  protocol_id=None
[2025-07-27 17:22:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:22:18]  replicas=None
[2025-07-27 17:22:18]  scope=mc23_13p6TeV
[2025-07-27 17:22:18]  status=None
[2025-07-27 17:22:18]  status_code=0
[2025-07-27 17:22:18]  storage_token=
[2025-07-27 17:22:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412593/log.45743349._049513.job.log.tgz.1
[2025-07-27 17:22:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/f0/log.45743349._049513.job.log.tgz.1
[2025-07-27 17:22:18]  workdir=None
[2025-07-27 17:22:18] ]
[2025-07-27 17:22:18] 2025-07-27 21:21:38,204 | INFO     | transferring file log.45743349._049513.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412593/log.45743349._049513.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:22:18] 2025-07-27 21:21:38,204 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412593/log.45743349._049513.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049513.job
[2025-07-27 17:22:18] 2025-07-27 21:21:38,220 | INFO     | adding to output.list: log.45743349._049513.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/f0/log.45743349._049513.job.log.tg
[2025-07-27 17:22:18] 2025-07-27 21:21:38,221 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:22:18] 2025-07-27 21:21:38,221 | INFO     | summary of transferred files:
[2025-07-27 17:22:18] 2025-07-27 21:21:38,221 | INFO     |  -- lfn=log.45743349._049513.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:22:18] 2025-07-27 21:21:38,222 | INFO     | stage-out finished correctly
[2025-07-27 17:22:18] 2025-07-27 21:21:40,301 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:22:18] 2025-07-27 21:21:40,372 | INFO     | job 6747412593 has state=finished
[2025-07-27 17:22:18] 2025-07-27 21:21:40,372 | INFO     | preparing for final server update for job 6747412593 in state='finished'
[2025-07-27 17:22:18] 2025-07-27 21:21:40,373 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:22:18] 2025-07-27 21:21:40,373 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:22:18] 2025-07-27 21:21:40,374 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:22:18] 2025-07-27 21:21:40,374 | INFO     | job 6747412593 has finished - writing final server update
[2025-07-27 17:22:18] 2025-07-27 21:21:40,374 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:22:18] 2025-07-27 21:21:40,375 | INFO     | executing command: lscpu
[2025-07-27 17:22:18] 2025-07-27 21:21:40,423 | INFO     | monitor loop #306: job 0:6747412593 is in state 'finished'
[2025-07-27 17:22:18] 2025-07-27 21:21:40,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:22:18] 2025-07-27 21:21:40,433 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:22:18] 2025-07-27 21:21:42,927 | INFO     | monitor loop #307: job 0:6747412593 is in state 'finished'
[2025-07-27 17:22:18] 2025-07-27 21:21:42,927 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,680 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:22:18] 2025-07-27 21:21:44,688 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2929.1849821428573
[2025-07-27 17:22:18] 2025-07-27 21:21:44,696 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412593/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,697 | INFO     | extracted standard info from prmon json
[2025-07-27 17:22:18] 2025-07-27 21:21:44,697 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:22:18] 2025-07-27 21:21:44,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:22:18] 2025-07-27 21:21:44,697 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:22:18] 2025-07-27 21:21:44,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:22:18] 2025-07-27 21:21:44,699 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:22:18] 2025-07-27 21:21:44,699 | INFO     | sum of square deviations: 66959395.0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,699 | INFO     | sum of deviations: 1456934431.0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | mean x: 1753649363.5
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | mean y: 2515384.2
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | -- intersect: -38154223301.75117
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | intersect: -38154223301.75117
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | chi2: 0.08852316303995043
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | -- intersect: -38154223301.75117
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | current memory leak: 21.76 B/s (using 60 data points, chi2=0.09)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | could have reported an average CPU frequency of 2889 MHz (6 samples)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,700 | INFO     | ..............................
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . Timing measurements:
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . get job = 0 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . initial setup = 2 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . payload setup = 7 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . stage-in = 0 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . payload execution = 4038 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . stage-out = 0 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | . log creation = 0 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,701 | INFO     | ..............................
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | 
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | job summary report
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | --------------------------------------------------
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | PanDA job id: 6747412593
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | task id: 45743349
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | errors: (none)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | pilot state: finished 
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | transexitcode: 0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | exeerrorcode: 0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | exeerrordiag: 
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | exitcode: 0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,781 | INFO     | exitmsg: OK
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | cpuconsumptiontime: 43111 s
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | nevents: 400
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | neventsw: 0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | pid: 3087305
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | pgrp: 3087305
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | corecount: 12
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | event service: False
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | sizes: {0: 2397248, 1: 2397503, 6: 2397765, 12: 2397793, 4050: 2423577, 4051: 2423576, 4052: 2432758, 4054: 2432814, 4059: 2433008}
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | --------------------------------------------------
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | 
[2025-07-27 17:22:18] 2025-07-27 21:21:44,782 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:22:18] 2025-07-27 21:21:44,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,798 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:22:18] 2025-07-27 21:21:44,799 | INFO     | job 6747412593 has completed (purged errors)
[2025-07-27 17:22:18] 2025-07-27 21:21:44,799 | INFO     | overall cleanup function is called
[2025-07-27 17:22:18] 2025-07-27 21:21:45,806 | INFO     | --- collectZombieJob: --- 10, [3087305]
[2025-07-27 17:22:18] 2025-07-27 21:21:45,807 | INFO     | zombie collector waiting for pid 3087305
[2025-07-27 17:22:18] 2025-07-27 21:21:45,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:22:18] 2025-07-27 21:21:45,807 | INFO     | collected zombie processes
[2025-07-27 17:22:18] 2025-07-27 21:21:45,807 | INFO     | will attempt to kill all subprocesses of pid=3087305
[2025-07-27 17:22:18] 2025-07-27 21:21:46,062 | INFO     | process IDs to be killed: [3087305] (in reverse order)
[2025-07-27 17:22:18] 2025-07-27 21:21:46,154 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:22:18] 2025-07-27 21:21:46,154 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:22:18] 2025-07-27 21:21:46,165 | INFO     | did not find any defunct processes belonging to 3087305
[2025-07-27 17:22:18] 2025-07-27 21:21:46,175 | INFO     | did not find any defunct processes belonging to 3087305
[2025-07-27 17:22:18] 2025-07-27 21:21:46,176 | INFO     | ready for new job
[2025-07-27 17:22:18] 2025-07-27 21:21:46,176 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:22:18] 2025-07-27 21:21:46,177 | INFO     | ***************************************
[2025-07-27 17:22:18] 2025-07-27 21:21:46,177 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:22:18] 2025-07-27 21:21:46,177 | INFO     | ***************************************
[2025-07-27 17:22:18] 2025-07-27 21:21:46,177 | INFO     | 
[2025-07-27 17:22:18] 2025-07-27 21:21:46,193 | INFO     | architecture information:
[2025-07-27 17:22:18] 2025-07-27 21:21:46,193 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:22:18] 2025-07-27 21:21:46,206 | INFO     | cat /etc/os-release:
[2025-07-27 17:22:18] NAME="CentOS Linux"
[2025-07-27 17:22:18] VERSION="7 (Core)"
[2025-07-27 17:22:18] ID="centos"
[2025-07-27 17:22:18] ID_LIKE="rhel fedora"
[2025-07-27 17:22:18] VERSION_ID="7"
[2025-07-27 17:22:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:22:18] ANSI_COLOR="0;31"
[2025-07-27 17:22:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:22:18] HOME_URL="https://www.centos.org/"
[2025-07-27 17:22:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:22:18] 
[2025-07-27 17:22:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:22:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:22:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:22:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:22:18] 
[2025-07-27 17:22:18] 2025-07-27 21:21:46,208 | INFO     | ***************************************
[2025-07-27 17:22:18] 2025-07-27 21:21:46,710 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:22:18] 2025-07-27 21:21:46,725 | INFO     | sufficient remaining disk space (56208916480 B)
[2025-07-27 17:22:18] 2025-07-27 21:21:46,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:22:18] 2025-07-27 21:21:46,726 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:22:18] 2025-07-27 21:21:46,726 | INFO     | update_server=False
[2025-07-27 17:22:18] 2025-07-27 21:21:46,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:22:18] 2025-07-27 21:21:46,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:22:18] 2025-07-27 21:21:46,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:22:18] 2025-07-27 21:21:46,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:22:18] 2025-07-27 21:21:46,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:22:18] 2025-07-27 21:21:46,728 | INFO     | aborting loop
[2025-07-27 17:22:18] 2025-07-27 21:21:47,133 | INFO     | all data control threads have been joined
[2025-07-27 17:22:18] 2025-07-27 21:21:47,529 | INFO     | all job control threads have been joined
[2025-07-27 17:22:18] 2025-07-27 21:21:47,730 | INFO     | all payload control threads have been joined
[2025-07-27 17:22:18] 2025-07-27 21:21:47,731 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:47,732 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:47,733 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:47,835 | INFO     | [job] validate thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,121 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,138 | INFO     | [data] control thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,223 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,260 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,534 | INFO     | [job] control thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,538 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,547 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,732 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,736 | INFO     | [payload] control thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:48,807 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:49,210 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:50,732 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:22:18] 2025-07-27 21:21:51,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949542307648)>', '<ExcThread(monitor, started 139948690765568)>']
[2025-07-27 17:22:18] 2025-07-27 21:21:56,077 | INFO     | all workflow threads have been joined
[2025-07-27 17:22:18] 2025-07-27 21:21:56,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:22:18] 2025-07-27 21:21:56,078 | INFO     | traces error code: 0
[2025-07-27 17:22:18] 2025-07-27 21:21:56,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:22:18] 2025-07-27 21:22:17,746 | INFO     | PID=3079572 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:22:18] 2025-07-27 21:22:17,747 | INFO     | .. there are 10 such processes running
[2025-07-27 17:22:18] 2025-07-27 21:22:17,748 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:22:18] 2025-07-27 21:22:17,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:22:18] 2025-07-27 21:22:17,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:22:18] 2025-07-27 21:22:17,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:22:18] 2025-07-27 21:22:17,749 | INFO     | [monitor] control thread has ended
[2025-07-27 17:22:18] 2025-07-27 21:22:17,892 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:22:18] 2025-07-27 21:22:17,895 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:22:18] 2025-07-27 21:22:17,897 [wrapper] pilotpid: 3079572
[2025-07-27 17:22:18] 2025-07-27 21:22:17,900 [wrapper] Pilot exit status: 0
[2025-07-27 17:22:18] 2025-07-27 21:22:17,910 [wrapper] pandaids: 6747412593
[2025-07-27 17:22:18] 2025-07-27 21:22:17,971 [wrapper] cleanup supervisor_pilot 3329206 3079573
[2025-07-27 17:22:18] 2025-07-27 21:22:17,974 [wrapper] Test setup, not cleaning
[2025-07-27 17:22:18] 2025-07-27 21:22:17,977 [wrapper] apfmon messages muted
[2025-07-27 17:22:18] 2025-07-27 21:22:17,980 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:22:18] 2025-07-27 21:22:17,982 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:22:18]  *** Error codes and diagnostics ***
[2025-07-27 17:22:18]     "exeErrorCode": 0,
[2025-07-27 17:22:18]     "exeErrorDiag": "",
[2025-07-27 17:22:18]     "pilotErrorCode": 0,
[2025-07-27 17:22:18]     "pilotErrorDiag": "",
[2025-07-27 17:22:18]  *** Listing of results directory ***
[2025-07-27 17:22:18] total 433416
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:42 pilot3.tar.gz
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:44 queuedata.json
[2025-07-27 17:22:18] -rwx------. 1 boincer umatlas     36292 Jul 27 09:45 runpilot2-wrapper.sh
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:22:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:13 run_atlas
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:13 job.xml
[2025-07-27 17:22:18] -rw-r--r--. 2 boincer umatlas 229863642 Jul 27 16:13 EVNT.45743347._002731.pool.root.1
[2025-07-27 17:22:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:13 start_atlas.sh
[2025-07-27 17:22:18] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:13 shared
[2025-07-27 17:22:18] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 16:13 input.tar.gz
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:13 boinc_lockfile
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:13 pandaJob.out
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas    980125 Jul 27 16:13 agis_schedconf.cvmfs.json
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:13 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:22:18] drwx------. 4 boincer umatlas      4096 Jul 27 16:13 pilot3
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas      6839 Jul 27 17:09 init_data.xml
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas 208517608 Jul 27 17:21 HITS.45743349._049513.pool.root.1
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:21 boinc_task_state.xml
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas      1028 Jul 27 17:21 memory_monitor_summary.json
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas    365386 Jul 27 17:21 log.45743349._049513.job.log.tgz.1
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas      7816 Jul 27 17:21 heartbeat.json
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:21 boinc_mmap_file
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:21 wrapper_checkpoint.txt
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas        95 Jul 27 17:22 pilot_heartbeat.json
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas       823 Jul 27 17:22 pilotlog.txt
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas    413998 Jul 27 17:22 log.45743349._049513.job.log.1
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas       357 Jul 27 17:22 output.list
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:22 runtime_log
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas    798720 Jul 27 17:22 result.tar.gz
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 17:22 runtime_log.err
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas       655 Jul 27 17:22 otzLDmJsG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIRVLDmjtrOln.diag
[2025-07-27 17:22:18] -rw-r--r--. 1 boincer umatlas     21481 Jul 27 17:22 stderr.txt
[2025-07-27 17:22:18] HITS file was successfully produced:
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas 208517608 Jul 27 17:21 shared/HITS.pool.root.1
[2025-07-27 17:22:18]  *** Contents of shared directory: ***
[2025-07-27 17:22:18] total 429444
[2025-07-27 17:22:18] -rw-r--r--. 2 boincer umatlas 229863642 Jul 27 16:13 ATLAS.root_0
[2025-07-27 17:22:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:13 start_atlas.sh
[2025-07-27 17:22:18] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 16:13 input.tar.gz
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas 208517608 Jul 27 17:21 HITS.pool.root.1
[2025-07-27 17:22:18] -rw-------. 1 boincer umatlas    798720 Jul 27 17:22 result.tar.gz
17:22:19 (3075981): run_atlas exited; CPU time 43194.400319
17:22:19 (3075981): called boinc_finish(0)

</stderr_txt>
]]>

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