Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:56:07 (3053073): wrapper (7.7.26015): starting
14:56:07 (3053073): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 14:56:07] Arguments: --nthreads 8
[2025-07-27 14:56:07] Threads: 8
[2025-07-27 14:56:07] Checking for CVMFS
[2025-07-27 14:56:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:56:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:56:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:56:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:56:08] 2.13.1.0 87270 8569 213444 148821 2 460 22145971 40960000 18257 16776704 0 23119561 99.823 16122830 35926 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 14:56:08] CVMFS is ok
[2025-07-27 14:56:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:56:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:56:08] Further information can be found at the LHC@home message board.
[2025-07-27 14:56:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:56:08] Checking for apptainer binary...
[2025-07-27 14:56:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:56:08] Running /usr/bin/apptainer --version
[2025-07-27 14:56:09] apptainer version 1.4.1-1.el9
[2025-07-27 14:56:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:56:09] c-211-33-3.aglt2.org
[2025-07-27 14:56:09] apptainer works
[2025-07-27 14:56:09] Set ATHENA_PROC_NUMBER=8
[2025-07-27 14:56:09] Set ATHENA_CORE_NUMBER=8
[2025-07-27 14:56:09] Starting ATLAS job with PandaID=6747412111
[2025-07-27 14:56:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:53:06]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:53:06] 2025-07-27 21:52:30,547 | INFO     | intersect: 2441701667.355581
[2025-07-27 17:53:06] 2025-07-27 21:52:30,547 | INFO     | chi2: 0.03662103563409413
[2025-07-27 17:53:06] 2025-07-27 21:52:30,547 | INFO     | current chi2=0.03662103563409413 (change=97.43874198092134 %)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,547 | INFO     | sum of square deviations: 1318272279.586423
[2025-07-27 17:53:06] 2025-07-27 21:52:30,548 | INFO     | sum of deviations: -1296408438.7098787
[2025-07-27 17:53:06] 2025-07-27 21:52:30,548 | INFO     | mean x: 1753648154.7345679
[2025-07-27 17:53:06] 2025-07-27 21:52:30,548 | INFO     | mean y: 2540765.216049383
[2025-07-27 17:53:06] 2025-07-27 21:52:30,549 | INFO     | -- intersect: 1727104272.7178082
[2025-07-27 17:53:06] 2025-07-27 21:52:30,549 | INFO     | intersect: 1727104272.7178082
[2025-07-27 17:53:06] 2025-07-27 21:52:30,549 | INFO     | chi2: 0.026032938988953452
[2025-07-27 17:53:06] 2025-07-27 21:52:30,549 | INFO     | current chi2=0.026032938988953452 (change=28.912608455243067 %)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,550 | INFO     | sum of square deviations: 1199943471.7452269
[2025-07-27 17:53:06] 2025-07-27 21:52:30,550 | INFO     | sum of deviations: 2032170217.656051
[2025-07-27 17:53:06] 2025-07-27 21:52:30,551 | INFO     | mean x: 1753648307.2292993
[2025-07-27 17:53:06] 2025-07-27 21:52:30,551 | INFO     | mean y: 2536468.5095541403
[2025-07-27 17:53:06] 2025-07-27 21:52:30,551 | INFO     | -- intersect: -2967363319.3622713
[2025-07-27 17:53:06] 2025-07-27 21:52:30,551 | INFO     | intersect: -2967363319.3622713
[2025-07-27 17:53:06] 2025-07-27 21:52:30,551 | INFO     | chi2: 0.01124253669571737
[2025-07-27 17:53:06] 2025-07-27 21:52:30,551 | INFO     | current chi2=0.01124253669571737 (change=56.81418567266681 %)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,552 | INFO     | sum of square deviations: 1088907671.9407918
[2025-07-27 17:53:06] 2025-07-27 21:52:30,553 | INFO     | sum of deviations: 2888538814.269737
[2025-07-27 17:53:06] 2025-07-27 21:52:30,553 | INFO     | mean x: 1753648459.7302632
[2025-07-27 17:53:06] 2025-07-27 21:52:30,553 | INFO     | mean y: 2535342.0065789474
[2025-07-27 17:53:06] 2025-07-27 21:52:30,553 | INFO     | -- intersect: -4649357351.050537
[2025-07-27 17:53:06] 2025-07-27 21:52:30,553 | INFO     | intersect: -4649357351.050537
[2025-07-27 17:53:06] 2025-07-27 21:52:30,554 | INFO     | chi2: 0.002174258290159676
[2025-07-27 17:53:06] 2025-07-27 21:52:30,554 | INFO     | current chi2=0.002174258290159676 (change=80.66042967875819 %)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,554 | INFO     | sum of square deviations: 984932256.6666688
[2025-07-27 17:53:06] 2025-07-27 21:52:30,555 | INFO     | sum of deviations: 1997117119.4285712
[2025-07-27 17:53:06] 2025-07-27 21:52:30,555 | INFO     | mean x: 1753648612.2380953
[2025-07-27 17:53:06] 2025-07-27 21:52:30,555 | INFO     | mean y: 2536647.2448979593
[2025-07-27 17:53:06] 2025-07-27 21:52:30,555 | INFO     | -- intersect: -3553283198.493104
[2025-07-27 17:53:06] 2025-07-27 21:52:30,555 | INFO     | intersect: -3553283198.493104
[2025-07-27 17:53:06] 2025-07-27 21:52:30,556 | INFO     | chi2: 0.0015307680998546047
[2025-07-27 17:53:06] 2025-07-27 21:52:30,556 | INFO     | current chi2=0.0015307680998546047 (change=29.59584853452778 %)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,556 | INFO     | sum of square deviations: 887794178.8732393
[2025-07-27 17:53:06] 2025-07-27 21:52:30,557 | INFO     | sum of deviations: 1504416097.2394369
[2025-07-27 17:53:06] 2025-07-27 21:52:30,557 | INFO     | mean x: 1753648764.7464788
[2025-07-27 17:53:06] 2025-07-27 21:52:30,557 | INFO     | mean y: 2537417.4788732394
[2025-07-27 17:53:06] 2025-07-27 21:52:30,557 | INFO     | -- intersect: -2969116929.1817465
[2025-07-27 17:53:06] 2025-07-27 21:52:30,557 | INFO     | intersect: -2969116929.1817465
[2025-07-27 17:53:06] 2025-07-27 21:52:30,558 | INFO     | chi2: 0.0013503023375038494
[2025-07-27 17:53:06] 2025-07-27 21:52:30,558 | INFO     | current chi2=0.0013503023375038494 (change=11.789229365825973 %)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,558 | INFO     | left removable region: 60
[2025-07-27 17:53:06] 2025-07-27 21:52:30,558 | INFO     | sum of square deviations: 369258976.5660365
[2025-07-27 17:53:06] 2025-07-27 21:52:30,559 | INFO     | sum of deviations: 101001395.54716985
[2025-07-27 17:53:06] 2025-07-27 21:52:30,559 | INFO     | mean x: 1753649496.7735848
[2025-07-27 17:53:06] 2025-07-27 21:52:30,559 | INFO     | mean y: 2540503.4811320757
[2025-07-27 17:53:06] 2025-07-27 21:52:30,559 | INFO     | -- intersect: -477125686.68675596
[2025-07-27 17:53:06] 2025-07-27 21:52:30,559 | INFO     | intersect: -477125686.68675596
[2025-07-27 17:53:06] 2025-07-27 21:52:30,559 | INFO     | chi2: 0.0008989207295327425
[2025-07-27 17:53:06] 2025-07-27 21:52:30,560 | INFO     | -- intersect: -477125686.68675596
[2025-07-27 17:53:06] 2025-07-27 21:52:30,560 | INFO     | current memory leak: 0.27 B/s (using 106 data points, chi2=0.00)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,560 | INFO     | could have reported an average CPU frequency of 2552 MHz (9 samples)
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | ..............................
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . Timing measurements:
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . get job = 0 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . initial setup = 2 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . payload setup = 13 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . stage-in = 0 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . payload execution = 10494 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . stage-out = 2 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | . log creation = 0 s
[2025-07-27 17:53:06] 2025-07-27 21:52:30,561 | INFO     | ..............................
[2025-07-27 17:53:06] 2025-07-27 21:52:31,010 | INFO     | 
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | job summary report
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | --------------------------------------------------
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | PanDA job id: 6747412111
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | task id: 45743349
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | errors: (none)
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | pilot state: finished 
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | transexitcode: 0
[2025-07-27 17:53:06] 2025-07-27 21:52:31,011 | INFO     | exeerrorcode: 0
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | exeerrordiag: 
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | exitcode: 0
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | exitmsg: OK
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | cpuconsumptiontime: 53688 s
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | nevents: 400
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | neventsw: 0
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | pid: 3063251
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | pgrp: 3063251
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | corecount: 8
[2025-07-27 17:53:06] 2025-07-27 21:52:31,012 | INFO     | event service: False
[2025-07-27 17:53:06] 2025-07-27 21:52:31,013 | INFO     | sizes: {0: 2397248, 1: 2397503, 2: 2397531, 10: 2397793, 12: 2397821, 10512: 2426829, 10513: 2426956, 10515: 2436010, 10517: 2436066, 10541: 2436324}
[2025-07-27 17:53:06] 2025-07-27 21:52:31,013 | INFO     | --------------------------------------------------
[2025-07-27 17:53:06] 2025-07-27 21:52:31,013 | INFO     | 
[2025-07-27 17:53:06] 2025-07-27 21:52:31,013 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:53:06] 2025-07-27 21:52:31,068 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,070 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,070 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,070 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,070 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,070 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,070 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,071 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | job 6747412111 has completed (purged errors)
[2025-07-27 17:53:06] 2025-07-27 21:52:31,072 | INFO     | overall cleanup function is called
[2025-07-27 17:53:06] 2025-07-27 21:52:32,121 | INFO     | --- collectZombieJob: --- 10, [3063251]
[2025-07-27 17:53:06] 2025-07-27 21:52:32,122 | INFO     | zombie collector waiting for pid 3063251
[2025-07-27 17:53:06] 2025-07-27 21:52:32,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:53:06] 2025-07-27 21:52:32,122 | INFO     | collected zombie processes
[2025-07-27 17:53:06] 2025-07-27 21:52:32,122 | INFO     | will attempt to kill all subprocesses of pid=3063251
[2025-07-27 17:53:06] 2025-07-27 21:52:32,635 | INFO     | PID=3056777 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:53:06] 2025-07-27 21:52:32,635 | INFO     | .. there are 15 such processes running
[2025-07-27 17:53:06] 2025-07-27 21:52:32,949 | INFO     | process IDs to be killed: [3063251] (in reverse order)
[2025-07-27 17:53:06] 2025-07-27 21:52:33,052 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:53:06] 2025-07-27 21:52:33,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:53:06] 2025-07-27 21:52:33,088 | INFO     | did not find any defunct processes belonging to 3063251
[2025-07-27 17:53:06] 2025-07-27 21:52:33,116 | INFO     | did not find any defunct processes belonging to 3063251
[2025-07-27 17:53:06] 2025-07-27 21:52:33,119 | INFO     | ready for new job
[2025-07-27 17:53:06] 2025-07-27 21:52:33,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:53:06] 2025-07-27 21:52:33,121 | INFO     | ***************************************
[2025-07-27 17:53:06] 2025-07-27 21:52:33,121 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:53:06] 2025-07-27 21:52:33,121 | INFO     | ***************************************
[2025-07-27 17:53:06] 2025-07-27 21:52:33,122 | INFO     | 
[2025-07-27 17:53:06] 2025-07-27 21:52:33,128 | INFO     | architecture information:
[2025-07-27 17:53:06] 2025-07-27 21:52:33,129 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:53:06] 2025-07-27 21:52:33,153 | INFO     | cat /etc/os-release:
[2025-07-27 17:53:06] NAME="CentOS Linux"
[2025-07-27 17:53:06] VERSION="7 (Core)"
[2025-07-27 17:53:06] ID="centos"
[2025-07-27 17:53:06] ID_LIKE="rhel fedora"
[2025-07-27 17:53:06] VERSION_ID="7"
[2025-07-27 17:53:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:53:06] ANSI_COLOR="0;31"
[2025-07-27 17:53:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:53:06] HOME_URL="https://www.centos.org/"
[2025-07-27 17:53:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:53:06] 
[2025-07-27 17:53:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:53:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:53:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:53:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:53:06] 
[2025-07-27 17:53:06] 2025-07-27 21:52:33,153 | INFO     | ***************************************
[2025-07-27 17:53:06] 2025-07-27 21:52:33,656 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:53:06] 2025-07-27 21:52:33,703 | INFO     | sufficient remaining disk space (128986382336 B)
[2025-07-27 17:53:06] 2025-07-27 21:52:33,703 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:53:06] 2025-07-27 21:52:33,704 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:53:06] 2025-07-27 21:52:33,704 | INFO     | update_server=False
[2025-07-27 17:53:06] 2025-07-27 21:52:33,704 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:53:06] 2025-07-27 21:52:33,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:53:06] 2025-07-27 21:52:33,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:53:06] 2025-07-27 21:52:33,706 | INFO     | aborting loop
[2025-07-27 17:53:06] 2025-07-27 21:52:33,832 | INFO     | all payload control threads have been joined
[2025-07-27 17:53:06] 2025-07-27 21:52:34,306 | INFO     | all data control threads have been joined
[2025-07-27 17:53:06] 2025-07-27 21:52:34,440 | INFO     | all job control threads have been joined
[2025-07-27 17:53:06] 2025-07-27 21:52:34,710 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:34,711 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:34,815 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:34,824 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:34,838 | INFO     | [payload] control thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,182 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,312 | INFO     | [data] control thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,446 | INFO     | [job] control thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,712 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,738 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,747 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:35,775 | INFO     | [job] validate thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:36,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:53:06] 2025-07-27 21:52:36,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:53:06] 2025-07-27 21:52:36,256 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:37,031 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:40,215 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:53:06] 2025-07-27 21:52:41,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662571583296)>', '<ExcThread(monitor, started 139662219777792)>']
[2025-07-27 17:53:06] 2025-07-27 21:52:46,464 | INFO     | all workflow threads have been joined
[2025-07-27 17:53:06] 2025-07-27 21:52:46,465 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:53:06] 2025-07-27 21:52:46,465 | INFO     | traces error code: 0
[2025-07-27 17:53:06] 2025-07-27 21:52:46,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:53:06] 2025-07-27 21:53:05,465 | INFO     | PID=3056777 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:53:06] 2025-07-27 21:53:05,465 | INFO     | .. there are 15 such processes running
[2025-07-27 17:53:06] 2025-07-27 21:53:05,466 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:53:06] 2025-07-27 21:53:05,466 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:53:06] 2025-07-27 21:53:05,466 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:53:06] 2025-07-27 21:53:05,466 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:53:06] 2025-07-27 21:53:05,467 | INFO     | [monitor] control thread has ended
[2025-07-27 17:53:06] 2025-07-27 21:53:05,743 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:53:06] 2025-07-27 21:53:05,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:53:06] 2025-07-27 21:53:05,786 [wrapper] pilotpid: 3056777
[2025-07-27 17:53:06] 2025-07-27 21:53:05,803 [wrapper] Pilot exit status: 0
[2025-07-27 17:53:06] 2025-07-27 21:53:05,935 [wrapper] pandaids: 6747412111
[2025-07-27 17:53:06] 2025-07-27 21:53:06,136 [wrapper] cleanup supervisor_pilot 3365755 3056778
[2025-07-27 17:53:06] 2025-07-27 21:53:06,155 [wrapper] Test setup, not cleaning
[2025-07-27 17:53:06] 2025-07-27 21:53:06,171 [wrapper] apfmon messages muted
[2025-07-27 17:53:06] 2025-07-27 21:53:06,201 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:53:06] 2025-07-27 21:53:06,235 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:53:06]  *** Error codes and diagnostics ***
[2025-07-27 17:53:06]     "exeErrorCode": 0,
[2025-07-27 17:53:06]     "exeErrorDiag": "",
[2025-07-27 17:53:06]     "pilotErrorCode": 0,
[2025-07-27 17:53:06]     "pilotErrorDiag": "",
[2025-07-27 17:53:06]  *** Listing of results directory ***
[2025-07-27 17:53:06] total 439392
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:35 queuedata.json
[2025-07-27 17:53:06] -rwx------. 1 boincer umatlas     36292 Jul 27 09:36 runpilot2-wrapper.sh
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas       100 Jul 27 14:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:53:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 14:56 run_atlas
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas       105 Jul 27 14:56 job.xml
[2025-07-27 17:53:06] -rw-r--r--. 2 boincer umatlas 230445064 Jul 27 14:56 EVNT.45743347._002719.pool.root.1
[2025-07-27 17:53:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:56 start_atlas.sh
[2025-07-27 17:53:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 14:56 shared
[2025-07-27 17:53:06] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 14:56 input.tar.gz
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas         0 Jul 27 14:56 boinc_lockfile
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 14:56 pandaJob.out
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas    980125 Jul 27 14:56 agis_schedconf.cvmfs.json
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas   1593052 Jul 27 14:56 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:53:06] drwx------. 4 boincer umatlas      4096 Jul 27 14:56 pilot3
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas      6858 Jul 27 17:46 init_data.xml
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas 213029310 Jul 27 17:51 HITS.45743349._049213.pool.root.1
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas       530 Jul 27 17:51 boinc_task_state.xml
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas      1042 Jul 27 17:51 memory_monitor_summary.json
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas    367794 Jul 27 17:52 log.45743349._049213.job.log.tgz.1
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas      7826 Jul 27 17:52 heartbeat.json
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:53 boinc_mmap_file
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas        28 Jul 27 17:53 wrapper_checkpoint.txt
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas        95 Jul 27 17:53 pilot_heartbeat.json
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas       823 Jul 27 17:53 pilotlog.txt
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas    926175 Jul 27 17:53 log.45743349._049213.job.log.1
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas       357 Jul 27 17:53 output.list
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:53 runtime_log
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas   1310720 Jul 27 17:53 result.tar.gz
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas      8671 Jul 27 17:53 runtime_log.err
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas       656 Jul 27 17:53 4qKODmUjG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfPVLDmLYdd5m.diag
[2025-07-27 17:53:06] -rw-r--r--. 1 boincer umatlas     21220 Jul 27 17:53 stderr.txt
[2025-07-27 17:53:06] HITS file was successfully produced:
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas 213029310 Jul 27 17:51 shared/HITS.pool.root.1
[2025-07-27 17:53:06]  *** Contents of shared directory: ***
[2025-07-27 17:53:06] total 434920
[2025-07-27 17:53:06] -rw-r--r--. 2 boincer umatlas 230445064 Jul 27 14:56 ATLAS.root_0
[2025-07-27 17:53:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:56 start_atlas.sh
[2025-07-27 17:53:06] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 14:56 input.tar.gz
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas 213029310 Jul 27 17:51 HITS.pool.root.1
[2025-07-27 17:53:06] -rw-------. 1 boincer umatlas   1310720 Jul 27 17:53 result.tar.gz
17:53:07 (3053073): run_atlas exited; CPU time 54011.304724
17:53:07 (3053073): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN