Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:55:13 (2041506): wrapper (7.7.26015): starting
07:55:13 (2041506): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 07:55:13] Arguments: --nthreads 6
[2025-07-28 07:55:13] Threads: 6
[2025-07-28 07:55:13] Checking for CVMFS
[2025-07-28 07:55:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 07:55:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 07:55:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 07:55:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 07:55:14] 2.11.5.0 2723278 4402 75196 148827 3 57 52220568 52428801 1338 130560 0 9737569 99.997 153932 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 07:55:14] CVMFS is ok
[2025-07-28 07:55:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 07:55:14] Checking for apptainer binary...
[2025-07-28 07:55:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 07:55:14] Running /usr/bin/apptainer --version
[2025-07-28 07:55:14] apptainer version 1.3.5-1.el9
[2025-07-28 07:55:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 07:55:14] testio008
[2025-07-28 07:55:14] apptainer works
[2025-07-28 07:55:14] Set ATHENA_PROC_NUMBER=6
[2025-07-28 07:55:14] Set ATHENA_CORE_NUMBER=6
[2025-07-28 07:55:14] Starting ATLAS job with PandaID=6747412533
[2025-07-28 07:55:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 09:25:11]  *** The last 200 lines of the pilot log: ***
[2025-07-28 09:25:11] 2025-07-28 00:24:02,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:04,542 | INFO     | monitor loop #412: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:04,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:07,045 | INFO     | monitor loop #413: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:07,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:07,683 | INFO     | PID=2045249 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 09:25:11] 2025-07-28 00:24:07,683 | INFO     | .. there are 3 such processes running
[2025-07-28 09:25:11] 2025-07-28 00:24:08,683 | INFO     | 5331s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 09:25:11] 2025-07-28 00:24:09,548 | INFO     | monitor loop #414: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:09,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:12,051 | INFO     | monitor loop #415: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:12,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:14,554 | INFO     | monitor loop #416: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:14,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:17,057 | INFO     | monitor loop #417: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:17,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:19,560 | INFO     | monitor loop #418: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:19,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:22,063 | INFO     | monitor loop #419: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:22,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:24,567 | INFO     | monitor loop #420: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:24,567 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:27,070 | INFO     | monitor loop #421: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:27,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:29,572 | INFO     | monitor loop #422: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:29,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:29,762 | INFO     | PID=2045249 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 09:25:11] 2025-07-28 00:24:29,762 | INFO     | .. there are 3 such processes running
[2025-07-28 09:25:11] 2025-07-28 00:24:32,075 | INFO     | monitor loop #423: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:32,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:34,578 | INFO     | monitor loop #424: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:34,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:37,081 | INFO     | monitor loop #425: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:37,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:39,584 | INFO     | monitor loop #426: job 0:6747412533 is in state 'finished'
[2025-07-28 09:25:11] 2025-07-28 00:24:39,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,654 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 09:25:11] 2025-07-28 00:24:40,656 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 3537.15475
[2025-07-28 09:25:11] 2025-07-28 00:24:40,657 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747412533/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,658 | INFO     | extracted standard info from prmon json
[2025-07-28 09:25:11] 2025-07-28 00:24:40,658 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 09:25:11] 2025-07-28 00:24:40,658 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 09:25:11] 2025-07-28 00:24:40,658 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 09:25:11] 2025-07-28 00:24:40,658 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | fitting pss+swap vs Time
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | sum of square deviations: 152858680.0
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | sum of deviations: 14261692579.000002
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | mean x: 1753659625.0
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | mean y: 2374045.582278481
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | -- intersect: -163613813533.39215
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | intersect: -163613813533.39215
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | chi2: 1.4529589928252498
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | -- intersect: -163613813533.39215
[2025-07-28 09:25:11] 2025-07-28 00:24:40,659 | INFO     | current memory leak: 93.30 B/s (using 79 data points, chi2=1.45)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | could have reported an average CPU frequency of 2971 MHz (6 samples)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | ..............................
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . Timing measurements:
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . get job = 0 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . initial setup = 6 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . payload setup = 3 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . stage-in = 0 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . payload execution = 5238 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . stage-out = 0 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | . log creation = 0 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,660 | INFO     | ..............................
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | 
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | job summary report
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | --------------------------------------------------
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | PanDA job id: 6747412533
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | task id: 45743349
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | errors: (none)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | pilot state: finished 
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | transexitcode: 0
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | exeerrorcode: 0
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | exeerrordiag: 
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | exitcode: 0
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | exitmsg: OK
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | cpuconsumptiontime: 26828 s
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | nevents: 400
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | neventsw: 0
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | pid: 2053958
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | pgrp: 2053958
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | corecount: 6
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | event service: False
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | sizes: {0: 2397475, 1: 2397737, 10: 2397765, 5245: 2424183, 5246: 2433236, 5249: 2433236, 5344: 2433558}
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | --------------------------------------------------
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | 
[2025-07-28 09:25:11] 2025-07-28 00:24:40,683 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,689 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | job 6747412533 has completed (purged errors)
[2025-07-28 09:25:11] 2025-07-28 00:24:40,690 | INFO     | overall cleanup function is called
[2025-07-28 09:25:11] 2025-07-28 00:24:41,695 | INFO     | --- collectZombieJob: --- 10, [2053958]
[2025-07-28 09:25:11] 2025-07-28 00:24:41,695 | INFO     | zombie collector waiting for pid 2053958
[2025-07-28 09:25:11] 2025-07-28 00:24:41,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 09:25:11] 2025-07-28 00:24:41,695 | INFO     | collected zombie processes
[2025-07-28 09:25:11] 2025-07-28 00:24:41,695 | INFO     | will attempt to kill all subprocesses of pid=2053958
[2025-07-28 09:25:11] 2025-07-28 00:24:41,718 | INFO     | process IDs to be killed: [2053958] (in reverse order)
[2025-07-28 09:25:11] 2025-07-28 00:24:41,734 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 09:25:11] 2025-07-28 00:24:41,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 09:25:11] 2025-07-28 00:24:41,735 | INFO     | did not find any defunct processes belonging to 2053958
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | did not find any defunct processes belonging to 2053958
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | ready for new job
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | ***************************************
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | ***************************************
[2025-07-28 09:25:11] 2025-07-28 00:24:41,736 | INFO     | 
[2025-07-28 09:25:11] 2025-07-28 00:24:41,737 | INFO     | architecture information:
[2025-07-28 09:25:11] 2025-07-28 00:24:41,737 | INFO     | executing command: cat /etc/os-release
[2025-07-28 09:25:11] 2025-07-28 00:24:41,742 | INFO     | cat /etc/os-release:
[2025-07-28 09:25:11] NAME="CentOS Linux"
[2025-07-28 09:25:11] VERSION="7 (Core)"
[2025-07-28 09:25:11] ID="centos"
[2025-07-28 09:25:11] ID_LIKE="rhel fedora"
[2025-07-28 09:25:11] VERSION_ID="7"
[2025-07-28 09:25:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 09:25:11] ANSI_COLOR="0;31"
[2025-07-28 09:25:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 09:25:11] HOME_URL="https://www.centos.org/"
[2025-07-28 09:25:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 09:25:11] 
[2025-07-28 09:25:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 09:25:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 09:25:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 09:25:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 09:25:11] 
[2025-07-28 09:25:11] 2025-07-28 00:24:41,742 | INFO     | ***************************************
[2025-07-28 09:25:11] 2025-07-28 00:24:42,245 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-28 09:25:11] 2025-07-28 00:24:42,250 | INFO     | sufficient remaining disk space (271261368320 B)
[2025-07-28 09:25:11] 2025-07-28 00:24:42,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 09:25:11] 2025-07-28 00:24:42,250 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 09:25:11] 2025-07-28 00:24:42,250 | INFO     | update_server=False
[2025-07-28 09:25:11] 2025-07-28 00:24:42,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 09:25:11] 2025-07-28 00:24:42,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 09:25:11] 2025-07-28 00:24:42,513 | INFO     | all job control threads have been joined
[2025-07-28 09:25:11] 2025-07-28 00:24:42,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 09:25:11] 2025-07-28 00:24:43,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 09:25:11] 2025-07-28 00:24:43,093 | INFO     | aborting loop
[2025-07-28 09:25:11] 2025-07-28 00:24:43,255 | INFO     | [job] retrieve thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,255 | INFO     | [job] queue monitor thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,317 | INFO     | all data control threads have been joined
[2025-07-28 09:25:11] 2025-07-28 00:24:43,335 | INFO     | all payload control threads have been joined
[2025-07-28 09:25:11] 2025-07-28 00:24:43,341 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,518 | INFO     | [job] control thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,530 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,601 | INFO     | [job] validate thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,682 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,714 | INFO     | [payload] validate_post thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:43,864 | INFO     | [data] copytool_in thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:44,004 | INFO     | [payload] failed_post thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:44,098 | INFO     | [job] job monitor thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:44,320 | INFO     | [data] control thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:44,340 | INFO     | [payload] control thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:44,812 | INFO     | [data] copytool_out thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:45,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 09:25:11] 2025-07-28 00:24:49,289 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:52,389 | INFO     | job.realtimelogging is not enabled
[2025-07-28 09:25:11] 2025-07-28 00:24:53,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 09:25:11] 2025-07-28 00:24:55,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183365830464)>', '<ExcThread(monitor, started 140182489655040)>']
[2025-07-28 09:25:11] 2025-07-28 00:25:00,497 | INFO     | all workflow threads have been joined
[2025-07-28 09:25:11] 2025-07-28 00:25:00,498 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 09:25:11] 2025-07-28 00:25:00,498 | INFO     | traces error code: 0
[2025-07-28 09:25:11] 2025-07-28 00:25:00,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 09:25:11] 2025-07-28 00:25:11,886 | INFO     | PID=2045249 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 09:25:11] 2025-07-28 00:25:11,887 | INFO     | .. there are 3 such processes running
[2025-07-28 09:25:11] 2025-07-28 00:25:11,887 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 09:25:11] 2025-07-28 00:25:11,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 09:25:11] 2025-07-28 00:25:11,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 09:25:11] 2025-07-28 00:25:11,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 09:25:11] 2025-07-28 00:25:11,887 | INFO     | [monitor] control thread has ended
[2025-07-28 09:25:11] 2025-07-28 00:25:11,920 [wrapper] ==== pilot stdout END ====
[2025-07-28 09:25:11] 2025-07-28 00:25:11,921 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 09:25:11] 2025-07-28 00:25:11,922 [wrapper] pilotpid: 2045249
[2025-07-28 09:25:11] 2025-07-28 00:25:11,923 [wrapper] Pilot exit status: 0
[2025-07-28 09:25:11] 2025-07-28 00:25:11,926 [wrapper] pandaids: 6747412533
[2025-07-28 09:25:11] 2025-07-28 00:25:11,933 [wrapper] cleanup supervisor_pilot 2109998 2045250
[2025-07-28 09:25:11] 2025-07-28 00:25:11,934 [wrapper] Test setup, not cleaning
[2025-07-28 09:25:11] 2025-07-28 00:25:11,935 [wrapper] apfmon messages muted
[2025-07-28 09:25:11] 2025-07-28 00:25:11,936 [wrapper] ==== wrapper stdout END ====
[2025-07-28 09:25:11] 2025-07-28 00:25:11,937 [wrapper] ==== wrapper stderr END ====
[2025-07-28 09:25:11]  *** Error codes and diagnostics ***
[2025-07-28 09:25:11]     "exeErrorCode": 0,
[2025-07-28 09:25:11]     "exeErrorDiag": "",
[2025-07-28 09:25:11]     "pilotErrorCode": 0,
[2025-07-28 09:25:11]     "pilotErrorDiag": "",
[2025-07-28 09:25:11]  *** Listing of results directory ***
[2025-07-28 09:25:11] total 432332
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc    530466 Jul 27 22:42 pilot3.tar.gz
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc      5112 Jul 27 22:46 queuedata.json
[2025-07-28 09:25:11] -rwx------. 1 boinc boinc     36292 Jul 27 22:47 runpilot2-wrapper.sh
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc       100 Jul 28 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 09:25:11] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 07:55 run_atlas
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc       105 Jul 28 07:55 job.xml
[2025-07-28 09:25:11] -rw-r--r--. 2 boinc boinc     15095 Jul 28 07:55 start_atlas.sh
[2025-07-28 09:25:11] drwxrwx--x. 2 boinc boinc        68 Jul 28 07:55 shared
[2025-07-28 09:25:11] -rw-r--r--. 2 boinc boinc    542893 Jul 28 07:55 input.tar.gz
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc      9508 Jul 28 07:55 init_data.xml
[2025-07-28 09:25:11] -rw-r--r--. 2 boinc boinc 229693701 Jul 28 07:55 EVNT.45743347._002729.pool.root.1
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc         0 Jul 28 07:55 boinc_lockfile
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc      2563 Jul 28 07:55 pandaJob.out
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc    980109 Jul 28 07:55 agis_schedconf.cvmfs.json
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc   1593052 Jul 28 07:55 agis_ddmendpoints.agis.ALL.json
[2025-07-28 09:25:11] drwx------. 4 boinc boinc      4096 Jul 28 07:55 pilot3
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc 207554177 Jul 28 09:22 HITS.45743349._049453.pool.root.1
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc       529 Jul 28 09:22 boinc_task_state.xml
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc      1016 Jul 28 09:22 memory_monitor_summary.json
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc    272579 Jul 28 09:23 log.45743349._049453.job.log.tgz.1
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc      7762 Jul 28 09:24 heartbeat.json
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc        27 Jul 28 09:24 wrapper_checkpoint.txt
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc      8192 Jul 28 09:24 boinc_mmap_file
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc       822 Jul 28 09:25 pilotlog.txt
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc        95 Jul 28 09:25 pilot_heartbeat.json
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc    523925 Jul 28 09:25 log.45743349._049453.job.log.1
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc       357 Jul 28 09:25 output.list
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc       620 Jul 28 09:25 runtime_log
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc    819200 Jul 28 09:25 result.tar.gz
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc      8618 Jul 28 09:25 runtime_log.err
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc       643 Jul 28 09:25 l1pKDmQuG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoRVLDmvzOQlm.diag
[2025-07-28 09:25:11] -rw-r--r--. 1 boinc boinc     22164 Jul 28 09:25 stderr.txt
[2025-07-28 09:25:11] HITS file was successfully produced:
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc 207554177 Jul 28 09:22 shared/HITS.pool.root.1
[2025-07-28 09:25:11]  *** Contents of shared directory: ***
[2025-07-28 09:25:11] total 428352
[2025-07-28 09:25:11] -rw-r--r--. 2 boinc boinc     15095 Jul 28 07:55 start_atlas.sh
[2025-07-28 09:25:11] -rw-r--r--. 2 boinc boinc    542893 Jul 28 07:55 input.tar.gz
[2025-07-28 09:25:11] -rw-r--r--. 2 boinc boinc 229693701 Jul 28 07:55 ATLAS.root_0
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc 207554177 Jul 28 09:22 HITS.pool.root.1
[2025-07-28 09:25:11] -rw-------. 1 boinc boinc    819200 Jul 28 09:25 result.tar.gz
09:25:13 (2041506): run_atlas exited; CPU time 26861.427294
09:25:13 (2041506): called boinc_finish(0)

</stderr_txt>
]]>

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