Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:08:17 (592256): wrapper (7.7.26015): starting
16:08:17 (592256): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:08:17] Arguments: --nthreads 12
[2025-07-27 16:08:17] Threads: 12
[2025-07-27 16:08:17] Checking for CVMFS
[2025-07-27 16:08:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:08:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:08:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:08:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:08:18] 2.13.0.0 3229734 18823 352096 148822 1 377 31761301 40960000 10716 16776704 0 60024441 99.837 47874037 27694 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:08:18] CVMFS is ok
[2025-07-27 16:08:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:08:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:08:18] Further information can be found at the LHC@home message board.
[2025-07-27 16:08:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:08:18] Checking for apptainer binary...
[2025-07-27 16:08:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:08:18] Running /usr/bin/apptainer --version
[2025-07-27 16:08:18] apptainer version 1.4.1-1.el9
[2025-07-27 16:08:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:08:18] c6-5-7-4.aglt2.org
[2025-07-27 16:08:18] apptainer works
[2025-07-27 16:08:18] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:08:18] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:08:18] Starting ATLAS job with PandaID=6747412314
[2025-07-27 16:08:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:15:28]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:15:28]  is_tar=False
[2025-07-27 17:15:28]  lfn=log.45743349._049416.job.log.tgz.1
[2025-07-27 17:15:28]  mtime=0
[2025-07-27 17:15:28]  protocol_id=None
[2025-07-27 17:15:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:15:28]  replicas=None
[2025-07-27 17:15:28]  scope=mc23_13p6TeV
[2025-07-27 17:15:28]  status=None
[2025-07-27 17:15:28]  status_code=0
[2025-07-27 17:15:28]  storage_token=
[2025-07-27 17:15:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412314/log.45743349._049416.job.log.tgz.1
[2025-07-27 17:15:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/60/log.45743349._049416.job.log.tgz.1
[2025-07-27 17:15:28]  workdir=None
[2025-07-27 17:15:28] ]
[2025-07-27 17:15:28] 2025-07-27 21:14:48,537 | INFO     | transferring file log.45743349._049416.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412314/log.45743349._049416.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:15:28] 2025-07-27 21:14:48,538 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412314/log.45743349._049416.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049416.job
[2025-07-27 17:15:28] 2025-07-27 21:14:48,560 | INFO     | adding to output.list: log.45743349._049416.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/60/log.45743349._049416.job.log.tg
[2025-07-27 17:15:28] 2025-07-27 21:14:48,561 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:15:28] 2025-07-27 21:14:48,561 | INFO     | summary of transferred files:
[2025-07-27 17:15:28] 2025-07-27 21:14:48,561 | INFO     |  -- lfn=log.45743349._049416.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:15:28] 2025-07-27 21:14:48,561 | INFO     | stage-out finished correctly
[2025-07-27 17:15:28] 2025-07-27 21:14:48,651 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:15:28] 2025-07-27 21:14:50,297 | INFO     | monitor loop #294: job 0:6747412314 is in state 'finished'
[2025-07-27 17:15:28] 2025-07-27 21:14:50,298 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:15:28] 2025-07-27 21:14:50,479 | INFO     | job 6747412314 has state=finished
[2025-07-27 17:15:28] 2025-07-27 21:14:50,480 | INFO     | preparing for final server update for job 6747412314 in state='finished'
[2025-07-27 17:15:28] 2025-07-27 21:14:50,481 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:15:28] 2025-07-27 21:14:50,481 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:15:28] 2025-07-27 21:14:50,481 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:15:28] 2025-07-27 21:14:50,481 | INFO     | job 6747412314 has finished - writing final server update
[2025-07-27 17:15:28] 2025-07-27 21:14:50,482 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:15:28] 2025-07-27 21:14:50,483 | INFO     | executing command: lscpu
[2025-07-27 17:15:28] 2025-07-27 21:14:50,547 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:15:28] 2025-07-27 21:14:52,801 | INFO     | monitor loop #295: job 0:6747412314 is in state 'finished'
[2025-07-27 17:15:28] 2025-07-27 21:14:52,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:15:28] 2025-07-27 21:14:55,306 | INFO     | monitor loop #296: job 0:6747412314 is in state 'finished'
[2025-07-27 17:15:28] 2025-07-27 21:14:55,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:15:28] 2025-07-27 21:14:55,854 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:15:28] 2025-07-27 21:14:55,865 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2799.48475
[2025-07-27 17:15:28] 2025-07-27 21:14:55,878 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412314/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:15:28] 2025-07-27 21:14:55,879 | INFO     | extracted standard info from prmon json
[2025-07-27 17:15:28] 2025-07-27 21:14:55,879 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:15:28] 2025-07-27 21:14:55,879 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:15:28] 2025-07-27 21:14:55,880 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:15:28] 2025-07-27 21:14:55,880 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:15:28] 2025-07-27 21:14:55,883 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:15:28] 2025-07-27 21:14:55,883 | INFO     | sum of square deviations: 60482994.5
[2025-07-27 17:15:28] 2025-07-27 21:14:55,883 | INFO     | sum of deviations: 842024754.5
[2025-07-27 17:15:28] 2025-07-27 21:14:55,884 | INFO     | mean x: 1753648983.5
[2025-07-27 17:15:28] 2025-07-27 21:14:55,884 | INFO     | mean y: 2744715.672413793
[2025-07-27 17:15:28] 2025-07-27 21:14:55,884 | INFO     | -- intersect: -24410991195.018353
[2025-07-27 17:15:28] 2025-07-27 21:14:55,884 | INFO     | intersect: -24410991195.018353
[2025-07-27 17:15:28] 2025-07-27 21:14:55,884 | INFO     | chi2: 0.00115944014748873
[2025-07-27 17:15:28] 2025-07-27 21:14:55,884 | INFO     | -- intersect: -24410991195.018353
[2025-07-27 17:15:28] 2025-07-27 21:14:55,885 | INFO     | current memory leak: 13.92 B/s (using 58 data points, chi2=0.00)
[2025-07-27 17:15:28] 2025-07-27 21:14:55,885 | INFO     | could have reported an average CPU frequency of 2851 MHz (6 samples)
[2025-07-27 17:15:28] 2025-07-27 21:14:55,885 | INFO     | ..............................
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . Timing measurements:
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . get job = 0 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . initial setup = 2 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . payload setup = 8 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . stage-in = 0 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . payload execution = 3948 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . stage-out = 1 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | . log creation = 0 s
[2025-07-27 17:15:28] 2025-07-27 21:14:55,886 | INFO     | ..............................
[2025-07-27 17:15:28] 2025-07-27 21:14:56,012 | INFO     | 
[2025-07-27 17:15:28] 2025-07-27 21:14:56,012 | INFO     | job summary report
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | --------------------------------------------------
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | PanDA job id: 6747412314
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | task id: 45743349
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | errors: (none)
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | pilot state: finished 
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | transexitcode: 0
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | exeerrorcode: 0
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | exeerrordiag: 
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | exitcode: 0
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | exitmsg: OK
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | cpuconsumptiontime: 42467 s
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | nevents: 400
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | neventsw: 0
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | pid: 603577
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | pgrp: 603577
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | corecount: 12
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | event service: False
[2025-07-27 17:15:28] 2025-07-27 21:14:56,013 | INFO     | sizes: {0: 2397424, 5: 2397686, 11: 2397742, 3960: 2423527, 3962: 2432581, 3969: 2432719}
[2025-07-27 17:15:28] 2025-07-27 21:14:56,014 | INFO     | --------------------------------------------------
[2025-07-27 17:15:28] 2025-07-27 21:14:56,014 | INFO     | 
[2025-07-27 17:15:28] 2025-07-27 21:14:56,014 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:15:28] 2025-07-27 21:14:56,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:15:28] 2025-07-27 21:14:56,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:15:28] 2025-07-27 21:14:56,037 | INFO     | job 6747412314 has completed (purged errors)
[2025-07-27 17:15:28] 2025-07-27 21:14:56,037 | INFO     | overall cleanup function is called
[2025-07-27 17:15:28] 2025-07-27 21:14:57,044 | INFO     | --- collectZombieJob: --- 10, [603577]
[2025-07-27 17:15:28] 2025-07-27 21:14:57,045 | INFO     | zombie collector waiting for pid 603577
[2025-07-27 17:15:28] 2025-07-27 21:14:57,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:15:28] 2025-07-27 21:14:57,045 | INFO     | collected zombie processes
[2025-07-27 17:15:28] 2025-07-27 21:14:57,045 | INFO     | will attempt to kill all subprocesses of pid=603577
[2025-07-27 17:15:28] 2025-07-27 21:14:57,322 | INFO     | process IDs to be killed: [603577] (in reverse order)
[2025-07-27 17:15:28] 2025-07-27 21:14:57,404 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:15:28] 2025-07-27 21:14:57,404 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:15:28] 2025-07-27 21:14:57,414 | INFO     | did not find any defunct processes belonging to 603577
[2025-07-27 17:15:28] 2025-07-27 21:14:57,424 | INFO     | did not find any defunct processes belonging to 603577
[2025-07-27 17:15:28] 2025-07-27 21:14:57,425 | INFO     | ready for new job
[2025-07-27 17:15:28] 2025-07-27 21:14:57,425 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:15:28] 2025-07-27 21:14:57,427 | INFO     | ***************************************
[2025-07-27 17:15:28] 2025-07-27 21:14:57,427 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:15:28] 2025-07-27 21:14:57,427 | INFO     | ***************************************
[2025-07-27 17:15:28] 2025-07-27 21:14:57,427 | INFO     | 
[2025-07-27 17:15:28] 2025-07-27 21:14:57,431 | INFO     | architecture information:
[2025-07-27 17:15:28] 2025-07-27 21:14:57,431 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:15:28] 2025-07-27 21:14:57,452 | INFO     | cat /etc/os-release:
[2025-07-27 17:15:28] NAME="CentOS Linux"
[2025-07-27 17:15:28] VERSION="7 (Core)"
[2025-07-27 17:15:28] ID="centos"
[2025-07-27 17:15:28] ID_LIKE="rhel fedora"
[2025-07-27 17:15:28] VERSION_ID="7"
[2025-07-27 17:15:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:15:28] ANSI_COLOR="0;31"
[2025-07-27 17:15:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:15:28] HOME_URL="https://www.centos.org/"
[2025-07-27 17:15:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:15:28] 
[2025-07-27 17:15:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:15:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:15:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:15:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:15:28] 
[2025-07-27 17:15:28] 2025-07-27 21:14:57,452 | INFO     | ***************************************
[2025-07-27 17:15:28] 2025-07-27 21:14:57,955 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:15:28] 2025-07-27 21:14:57,973 | INFO     | sufficient remaining disk space (75353817088 B)
[2025-07-27 17:15:28] 2025-07-27 21:14:57,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:15:28] 2025-07-27 21:14:57,974 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:15:28] 2025-07-27 21:14:57,974 | INFO     | update_server=False
[2025-07-27 17:15:28] 2025-07-27 21:14:57,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:15:28] 2025-07-27 21:14:57,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:15:28] 2025-07-27 21:14:58,166 | INFO     | all data control threads have been joined
[2025-07-27 17:15:28] 2025-07-27 21:14:58,383 | INFO     | all job control threads have been joined
[2025-07-27 17:15:28] 2025-07-27 21:14:58,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:15:28] 2025-07-27 21:14:58,815 | INFO     | aborting loop
[2025-07-27 17:15:28] 2025-07-27 21:14:58,979 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:58,980 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,139 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:15:28] 2025-07-27 21:14:59,171 | INFO     | [data] control thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,238 | INFO     | [job] validate thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,243 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:15:28] 2025-07-27 21:14:59,389 | INFO     | [job] control thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,467 | INFO     | all payload control threads have been joined
[2025-07-27 17:15:28] 2025-07-27 21:14:59,588 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,639 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,821 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:14:59,849 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:00,335 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:00,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:00,473 | INFO     | [payload] control thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:00,519 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:01,171 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:03,249 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:15:28] 2025-07-27 21:15:04,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506894477120)>', '<ExcThread(monitor, started 140506390570752)>']
[2025-07-27 17:15:28] 2025-07-27 21:15:09,843 | INFO     | all workflow threads have been joined
[2025-07-27 17:15:28] 2025-07-27 21:15:09,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:15:28] 2025-07-27 21:15:09,844 | INFO     | traces error code: 0
[2025-07-27 17:15:28] 2025-07-27 21:15:09,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:15:28] 2025-07-27 21:15:27,939 | INFO     | PID=595901 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:15:28] 2025-07-27 21:15:27,940 | INFO     | .. there are 13 such processes running
[2025-07-27 17:15:28] 2025-07-27 21:15:27,940 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:15:28] 2025-07-27 21:15:27,940 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:15:28] 2025-07-27 21:15:27,940 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:15:28] 2025-07-27 21:15:27,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:15:28] 2025-07-27 21:15:27,940 | INFO     | [monitor] control thread has ended
[2025-07-27 17:15:28] 2025-07-27 21:15:28,156 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:15:28] 2025-07-27 21:15:28,162 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:15:28] 2025-07-27 21:15:28,166 [wrapper] pilotpid: 595901
[2025-07-27 17:15:28] 2025-07-27 21:15:28,170 [wrapper] Pilot exit status: 0
[2025-07-27 17:15:28] 2025-07-27 21:15:28,188 [wrapper] pandaids: 6747412314
[2025-07-27 17:15:28] 2025-07-27 21:15:28,264 [wrapper] cleanup supervisor_pilot  754935 595902
[2025-07-27 17:15:28] 2025-07-27 21:15:28,270 [wrapper] Test setup, not cleaning
[2025-07-27 17:15:28] 2025-07-27 21:15:28,274 [wrapper] apfmon messages muted
[2025-07-27 17:15:28] 2025-07-27 21:15:28,277 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:15:28] 2025-07-27 21:15:28,279 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:15:28]  *** Error codes and diagnostics ***
[2025-07-27 17:15:28]     "exeErrorCode": 0,
[2025-07-27 17:15:28]     "exeErrorDiag": "",
[2025-07-27 17:15:28]     "pilotErrorCode": 0,
[2025-07-27 17:15:28]     "pilotErrorDiag": "",
[2025-07-27 17:15:28]  *** Listing of results directory ***
[2025-07-27 17:15:28] total 432328
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:39 queuedata.json
[2025-07-27 17:15:28] -rwx------. 1 boincer umatlas     36292 Jul 27 09:40 runpilot2-wrapper.sh
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:15:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:08 run_atlas
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:08 job.xml
[2025-07-27 17:15:28] -rw-r--r--. 2 boincer umatlas 230201175 Jul 27 16:08 EVNT.45743347._002727.pool.root.1
[2025-07-27 17:15:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:08 start_atlas.sh
[2025-07-27 17:15:28] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:08 shared
[2025-07-27 17:15:28] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:08 input.tar.gz
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:08 boinc_lockfile
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 16:08 pandaJob.out
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas    980125 Jul 27 16:08 agis_schedconf.cvmfs.json
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:08 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:15:28] drwx------. 4 boincer umatlas      4096 Jul 27 16:08 pilot3
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 17:13 init_data.xml
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas 207082259 Jul 27 17:14 HITS.45743349._049416.pool.root.1
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:14 boinc_task_state.xml
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas      1035 Jul 27 17:14 memory_monitor_summary.json
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas    367217 Jul 27 17:14 log.45743349._049416.job.log.tgz.1
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas        95 Jul 27 17:14 pilot_heartbeat.json
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas      7814 Jul 27 17:14 heartbeat.json
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:15 wrapper_checkpoint.txt
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:15 boinc_mmap_file
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas       822 Jul 27 17:15 pilotlog.txt
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas    402914 Jul 27 17:15 log.45743349._049416.job.log.1
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas       357 Jul 27 17:15 output.list
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:15 runtime_log
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas    788480 Jul 27 17:15 result.tar.gz
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas       654 Jul 27 17:15 Y4OLDmPnG07n9Rq4apOajLDm4fhM0noT9bVof3QYDmSc2KDmcb2Cwm.diag
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 17:15 runtime_log.err
[2025-07-27 17:15:28] -rw-r--r--. 1 boincer umatlas     21569 Jul 27 17:15 stderr.txt
[2025-07-27 17:15:28] HITS file was successfully produced:
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas 207082259 Jul 27 17:14 shared/HITS.pool.root.1
[2025-07-27 17:15:28]  *** Contents of shared directory: ***
[2025-07-27 17:15:28] total 428368
[2025-07-27 17:15:28] -rw-r--r--. 2 boincer umatlas 230201175 Jul 27 16:08 ATLAS.root_0
[2025-07-27 17:15:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:08 start_atlas.sh
[2025-07-27 17:15:28] -rw-r--r--. 2 boincer umatlas    542897 Jul 27 16:08 input.tar.gz
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas 207082259 Jul 27 17:14 HITS.pool.root.1
[2025-07-27 17:15:28] -rw-------. 1 boincer umatlas    788480 Jul 27 17:15 result.tar.gz
17:15:30 (592256): run_atlas exited; CPU time 42534.159748
17:15:30 (592256): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN