Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:51:31 (28706): wrapper (7.7.26015): starting
14:51:31 (28706): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 14:51:31] Arguments: --nthreads 12
[2025-07-27 14:51:31] Threads: 12
[2025-07-27 14:51:31] Checking for CVMFS
[2025-07-27 14:51:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:51:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:51:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:51:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:51:32] 2.11.2.0 2924 112339 96140 148821 2 59 15169288 20275200 1 130560 0 40142226 99.972 10275205 11281 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 14:51:32] CVMFS is ok
[2025-07-27 14:51:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:51:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:51:32] Further information can be found at the LHC@home message board.
[2025-07-27 14:51:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:51:32] Checking for apptainer binary...
[2025-07-27 14:51:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:51:32] Running /usr/bin/apptainer --version
[2025-07-27 14:51:32] apptainer version 1.3.2-1.el7
[2025-07-27 14:51:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:51:33] c-205-28.aglt2.org
[2025-07-27 14:51:33] apptainer works
[2025-07-27 14:51:33] Set ATHENA_PROC_NUMBER=12
[2025-07-27 14:51:33] Set ATHENA_CORE_NUMBER=12
[2025-07-27 14:51:33] Starting ATLAS job with PandaID=6747412615
[2025-07-27 14:51:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:19:56]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:19:56]  mtime=0
[2025-07-27 16:19:56]  protocol_id=None
[2025-07-27 16:19:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:19:56]  replicas=None
[2025-07-27 16:19:56]  scope=mc23_13p6TeV
[2025-07-27 16:19:56]  status=None
[2025-07-27 16:19:56]  status_code=0
[2025-07-27 16:19:56]  storage_token=
[2025-07-27 16:19:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412615/log.45743349._049535.job.log.tgz.1
[2025-07-27 16:19:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/44/log.45743349._049535.job.log.tgz.1
[2025-07-27 16:19:56]  workdir=None
[2025-07-27 16:19:56] ]
[2025-07-27 16:19:56] 2025-07-27 20:19:17,528 | INFO     | transferring file log.45743349._049535.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412615/log.45743349._049535.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:19:56] 2025-07-27 20:19:17,529 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412615/log.45743349._049535.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049535.job
[2025-07-27 16:19:56] 2025-07-27 20:19:17,553 | INFO     | adding to output.list: log.45743349._049535.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/44/log.45743349._049535.job.log.tg
[2025-07-27 16:19:56] 2025-07-27 20:19:17,554 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:19:56] 2025-07-27 20:19:17,554 | INFO     | summary of transferred files:
[2025-07-27 16:19:56] 2025-07-27 20:19:17,554 | INFO     |  -- lfn=log.45743349._049535.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:19:56] 2025-07-27 20:19:17,555 | INFO     | stage-out finished correctly
[2025-07-27 16:19:56] 2025-07-27 20:19:18,092 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:19:56] 2025-07-27 20:19:18,566 | INFO     | monitor loop #394: job 0:6747412615 is in state 'finished'
[2025-07-27 16:19:56] 2025-07-27 20:19:18,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:19:56] 2025-07-27 20:19:19,528 | INFO     | job 6747412615 has state=finished
[2025-07-27 16:19:56] 2025-07-27 20:19:19,529 | INFO     | preparing for final server update for job 6747412615 in state='finished'
[2025-07-27 16:19:56] 2025-07-27 20:19:19,594 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 16:19:56] 2025-07-27 20:19:19,595 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:19:56] 2025-07-27 20:19:19,595 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:19:56] 2025-07-27 20:19:19,595 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:19:56] 2025-07-27 20:19:19,595 | INFO     | job 6747412615 has finished - writing final server update
[2025-07-27 16:19:56] 2025-07-27 20:19:19,595 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:19:56] 2025-07-27 20:19:19,596 | INFO     | executing command: lscpu
[2025-07-27 16:19:56] 2025-07-27 20:19:19,622 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:19:56] 2025-07-27 20:19:21,069 | INFO     | monitor loop #395: job 0:6747412615 is in state 'finished'
[2025-07-27 16:19:56] 2025-07-27 20:19:21,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:19:56] 2025-07-27 20:19:23,578 | INFO     | monitor loop #396: job 0:6747412615 is in state 'finished'
[2025-07-27 16:19:56] 2025-07-27 20:19:23,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,657 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 16:19:56] 2025-07-27 20:19:24,661 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 16:19:56] 2025-07-27 20:19:24,664 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412615/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,665 | INFO     | extracted standard info from prmon json
[2025-07-27 16:19:56] 2025-07-27 20:19:24,665 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:19:56] 2025-07-27 20:19:24,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:19:56] 2025-07-27 20:19:24,666 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:19:56] 2025-07-27 20:19:24,666 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:19:56] 2025-07-27 20:19:24,669 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:19:56] 2025-07-27 20:19:24,669 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,670 | INFO     | sum of deviations: -5939578540.0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,670 | INFO     | mean x: 1753645022.0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,670 | INFO     | mean y: 2738186.417721519
[2025-07-27 16:19:56] 2025-07-27 20:19:24,671 | INFO     | -- intersect: 68143535551.991135
[2025-07-27 16:19:56] 2025-07-27 20:19:24,671 | INFO     | intersect: 68143535551.991135
[2025-07-27 16:19:56] 2025-07-27 20:19:24,671 | INFO     | chi2: 0.07858221988445767
[2025-07-27 16:19:56] 2025-07-27 20:19:24,671 | INFO     | -- intersect: 68143535551.991135
[2025-07-27 16:19:56] 2025-07-27 20:19:24,672 | INFO     | current memory leak: -38.86 B/s (using 79 data points, chi2=0.08)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,672 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,672 | INFO     | ..............................
[2025-07-27 16:19:56] 2025-07-27 20:19:24,672 | INFO     | . Timing measurements:
[2025-07-27 16:19:56] 2025-07-27 20:19:24,673 | INFO     | . get job = 0 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,673 | INFO     | . initial setup = 2 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,673 | INFO     | . payload setup = 9 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,673 | INFO     | . stage-in = 0 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,673 | INFO     | . payload execution = 5220 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,673 | INFO     | . stage-out = 0 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,674 | INFO     | . log creation = 0 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,674 | INFO     | ..............................
[2025-07-27 16:19:56] 2025-07-27 20:19:24,757 | INFO     | 
[2025-07-27 16:19:56] 2025-07-27 20:19:24,757 | INFO     | job summary report
[2025-07-27 16:19:56] 2025-07-27 20:19:24,757 | INFO     | --------------------------------------------------
[2025-07-27 16:19:56] 2025-07-27 20:19:24,757 | INFO     | PanDA job id: 6747412615
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | task id: 45743349
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | errors: (none)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | pilot state: finished 
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | transexitcode: 0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | exeerrorcode: 0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | exeerrordiag: 
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | exitcode: 0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | exitmsg: OK
[2025-07-27 16:19:56] 2025-07-27 20:19:24,758 | INFO     | cpuconsumptiontime: 55960 s
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | nevents: 400
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | neventsw: 0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | pid: 6547
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | pgrp: 6547
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | corecount: 12
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | event service: False
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 5233: 2424279, 5234: 2424278, 5235: 2433516, 5242: 2433654}
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | --------------------------------------------------
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | 
[2025-07-27 16:19:56] 2025-07-27 20:19:24,759 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:19:56] 2025-07-27 20:19:24,784 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,784 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,784 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,785 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,785 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,785 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,785 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,785 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,785 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,786 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,786 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,786 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,786 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,786 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,787 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,787 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,787 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,787 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,787 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:19:56] 2025-07-27 20:19:24,787 | INFO     | job 6747412615 has completed (purged errors)
[2025-07-27 16:19:56] 2025-07-27 20:19:24,788 | INFO     | overall cleanup function is called
[2025-07-27 16:19:56] 2025-07-27 20:19:25,796 | INFO     | --- collectZombieJob: --- 10, [6547]
[2025-07-27 16:19:56] 2025-07-27 20:19:25,796 | INFO     | zombie collector waiting for pid 6547
[2025-07-27 16:19:56] 2025-07-27 20:19:25,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:19:56] 2025-07-27 20:19:25,797 | INFO     | collected zombie processes
[2025-07-27 16:19:56] 2025-07-27 20:19:25,797 | INFO     | will attempt to kill all subprocesses of pid=6547
[2025-07-27 16:19:56] 2025-07-27 20:19:25,888 | INFO     | process IDs to be killed: [6547] (in reverse order)
[2025-07-27 16:19:56] 2025-07-27 20:19:25,937 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:19:56] 2025-07-27 20:19:25,938 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:19:56] 2025-07-27 20:19:25,941 | INFO     | did not find any defunct processes belonging to 6547
[2025-07-27 16:19:56] 2025-07-27 20:19:25,944 | INFO     | did not find any defunct processes belonging to 6547
[2025-07-27 16:19:56] 2025-07-27 20:19:25,945 | INFO     | ready for new job
[2025-07-27 16:19:56] 2025-07-27 20:19:25,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:19:56] 2025-07-27 20:19:25,946 | INFO     | ***************************************
[2025-07-27 16:19:56] 2025-07-27 20:19:25,946 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:19:56] 2025-07-27 20:19:25,946 | INFO     | ***************************************
[2025-07-27 16:19:56] 2025-07-27 20:19:25,946 | INFO     | 
[2025-07-27 16:19:56] 2025-07-27 20:19:25,947 | INFO     | architecture information:
[2025-07-27 16:19:56] 2025-07-27 20:19:25,947 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:19:56] 2025-07-27 20:19:25,961 | INFO     | cat /etc/os-release:
[2025-07-27 16:19:56] NAME="CentOS Linux"
[2025-07-27 16:19:56] VERSION="7 (Core)"
[2025-07-27 16:19:56] ID="centos"
[2025-07-27 16:19:56] ID_LIKE="rhel fedora"
[2025-07-27 16:19:56] VERSION_ID="7"
[2025-07-27 16:19:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:19:56] ANSI_COLOR="0;31"
[2025-07-27 16:19:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:19:56] HOME_URL="https://www.centos.org/"
[2025-07-27 16:19:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:19:56] 
[2025-07-27 16:19:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:19:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:19:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:19:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:19:56] 
[2025-07-27 16:19:56] 2025-07-27 20:19:25,961 | INFO     | ***************************************
[2025-07-27 16:19:56] 2025-07-27 20:19:26,464 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:19:56] 2025-07-27 20:19:26,480 | INFO     | sufficient remaining disk space (29342302208 B)
[2025-07-27 16:19:56] 2025-07-27 20:19:26,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:19:56] 2025-07-27 20:19:26,481 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:19:56] 2025-07-27 20:19:26,481 | INFO     | update_server=False
[2025-07-27 16:19:56] 2025-07-27 20:19:26,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:19:56] 2025-07-27 20:19:26,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:19:56] 2025-07-27 20:19:26,482 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:19:56] 2025-07-27 20:19:26,711 | INFO     | all payload control threads have been joined
[2025-07-27 16:19:56] 2025-07-27 20:19:27,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:19:56] 2025-07-27 20:19:27,087 | INFO     | aborting loop
[2025-07-27 16:19:56] 2025-07-27 20:19:27,158 | INFO     | all data control threads have been joined
[2025-07-27 16:19:56] 2025-07-27 20:19:27,486 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:27,487 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:27,644 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:27,716 | INFO     | [payload] control thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:27,736 | INFO     | all job control threads have been joined
[2025-07-27 16:19:56] 2025-07-27 20:19:27,742 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:27,868 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,089 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,162 | INFO     | [data] control thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,429 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,441 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,446 | INFO     | [job] validate thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,487 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,653 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:28,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:19:56] 2025-07-27 20:19:28,741 | INFO     | [job] control thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:32,689 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:37,402 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:19:56] 2025-07-27 20:19:38,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:19:56] 2025-07-27 20:19:39,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139812405598016)>', '<ExcThread(monitor, started 139811964831488)>']
[2025-07-27 16:19:56] 2025-07-27 20:19:44,622 | INFO     | all workflow threads have been joined
[2025-07-27 16:19:56] 2025-07-27 20:19:44,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:19:56] 2025-07-27 20:19:44,623 | INFO     | traces error code: 0
[2025-07-27 16:19:56] 2025-07-27 20:19:44,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:19:56] 2025-07-27 20:19:56,549 | INFO     | PID=32338 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 16:19:56] 2025-07-27 20:19:56,607 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:19:56] 2025-07-27 20:19:56,607 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:19:56] 2025-07-27 20:19:56,607 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:19:56] 2025-07-27 20:19:56,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:19:56] 2025-07-27 20:19:56,608 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 16:19:56] 2025-07-27 20:19:56,608 | INFO     | [monitor] control thread has ended
[2025-07-27 16:19:56] 2025-07-27 20:19:56,692 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:19:56] 2025-07-27 20:19:56,696 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:19:56] 2025-07-27 20:19:56,699 [wrapper] pilotpid: 32338
[2025-07-27 16:19:56] 2025-07-27 20:19:56,703 [wrapper] Pilot exit status: 0
[2025-07-27 16:19:56] 2025-07-27 20:19:56,720 [wrapper] pandaids: 6747412615
[2025-07-27 16:19:56] 2025-07-27 20:19:56,759 [wrapper] cleanup supervisor_pilot 27411 32339
[2025-07-27 16:19:56] 2025-07-27 20:19:56,763 [wrapper] Test setup, not cleaning
[2025-07-27 16:19:56] 2025-07-27 20:19:56,767 [wrapper] apfmon messages muted
[2025-07-27 16:19:56] 2025-07-27 20:19:56,771 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:19:56] 2025-07-27 20:19:56,775 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:19:56]  *** Error codes and diagnostics ***
[2025-07-27 16:19:56]     "exeErrorCode": 0,
[2025-07-27 16:19:56]     "exeErrorDiag": "",
[2025-07-27 16:19:56]     "pilotErrorCode": 0,
[2025-07-27 16:19:56]     "pilotErrorDiag": "",
[2025-07-27 16:19:56]  *** Listing of results directory ***
[2025-07-27 16:19:56] total 440668
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 09:42 pilot3.tar.gz
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 09:47 queuedata.json
[2025-07-27 16:19:56] -rwx------ 1 boincer umatlas     36292 Jul 27 09:49 runpilot2-wrapper.sh
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas       100 Jul 27 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:19:56] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 14:51 run_atlas
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas       105 Jul 27 14:51 job.xml
[2025-07-27 16:19:56] -rw-r--r-- 2 boincer umatlas 229746836 Jul 27 14:51 EVNT.45743347._002732.pool.root.1
[2025-07-27 16:19:56] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 14:51 start_atlas.sh
[2025-07-27 16:19:56] drwxrwx--x 2 boincer umatlas      4096 Jul 27 14:51 shared
[2025-07-27 16:19:56] -rw-r--r-- 2 boincer umatlas    542896 Jul 27 14:51 input.tar.gz
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas         0 Jul 27 14:51 boinc_lockfile
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 14:51 pandaJob.out
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas    980125 Jul 27 14:51 agis_schedconf.cvmfs.json
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas   1593052 Jul 27 14:51 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:19:56] drwx------ 4 boincer umatlas      4096 Jul 27 14:51 pilot3
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 16:13 init_data.xml
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas 215893449 Jul 27 16:18 HITS.45743349._049535.pool.root.1
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas       529 Jul 27 16:18 boinc_task_state.xml
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas      1050 Jul 27 16:19 memory_monitor_summary.json
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas    368856 Jul 27 16:19 log.45743349._049535.job.log.tgz.1
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas      7853 Jul 27 16:19 heartbeat.json
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas        95 Jul 27 16:19 pilot_heartbeat.json
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas       815 Jul 27 16:19 pilotlog.txt
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas        27 Jul 27 16:19 wrapper_checkpoint.txt
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 16:19 boinc_mmap_file
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas    497025 Jul 27 16:19 log.45743349._049535.job.log.1
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas       357 Jul 27 16:19 output.list
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas       620 Jul 27 16:19 runtime_log
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas    880640 Jul 27 16:19 result.tar.gz
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas       659 Jul 27 16:19 YtXNDmTvG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmISVLDmRSrmLm.diag
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 16:19 runtime_log.err
[2025-07-27 16:19:56] -rw-r--r-- 1 boincer umatlas     21681 Jul 27 16:19 stderr.txt
[2025-07-27 16:19:56] HITS file was successfully produced:
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas 215893449 Jul 27 16:18 shared/HITS.pool.root.1
[2025-07-27 16:19:56]  *** Contents of shared directory: ***
[2025-07-27 16:19:56] total 436612
[2025-07-27 16:19:56] -rw-r--r-- 2 boincer umatlas 229746836 Jul 27 14:51 ATLAS.root_0
[2025-07-27 16:19:56] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 14:51 start_atlas.sh
[2025-07-27 16:19:56] -rw-r--r-- 2 boincer umatlas    542896 Jul 27 14:51 input.tar.gz
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas 215893449 Jul 27 16:18 HITS.pool.root.1
[2025-07-27 16:19:56] -rw------- 1 boincer umatlas    880640 Jul 27 16:19 result.tar.gz
16:19:58 (28706): run_atlas exited; CPU time 55931.175819
16:19:58 (28706): called boinc_finish(0)

</stderr_txt>
]]>

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