Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:53:57 (3948197): wrapper (7.7.26015): starting
15:53:57 (3948197): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:53:57] Arguments: --nthreads 12
[2025-07-27 15:53:57] Threads: 12
[2025-07-27 15:53:57] Checking for CVMFS
[2025-07-27 15:53:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:53:57] 2.12.6.0 418423 18811 324468 148822 1 332 25412023 32935936 9426 16776704 0 33348771 99.645 54746720 33160 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 15:53:57] CVMFS is ok
[2025-07-27 15:53:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:53:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:53:57] Further information can be found at the LHC@home message board.
[2025-07-27 15:53:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:53:57] Checking for apptainer binary...
[2025-07-27 15:53:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:53:57] Running /usr/bin/apptainer --version
[2025-07-27 15:53:57] apptainer version 1.4.1-1.el9
[2025-07-27 15:53:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:53:57] c6-1-26-2.aglt2.org
[2025-07-27 15:53:57] apptainer works
[2025-07-27 15:53:57] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:53:57] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:53:57] Starting ATLAS job with PandaID=6745095294
[2025-07-27 15:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:06:54]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:06:54]  is_altstaged=None
[2025-07-27 17:06:54]  is_tar=False
[2025-07-27 17:06:54]  lfn=log.45743349._031680.job.log.tgz.1
[2025-07-27 17:06:54]  mtime=0
[2025-07-27 17:06:54]  protocol_id=None
[2025-07-27 17:06:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:06:54]  replicas=None
[2025-07-27 17:06:54]  scope=mc23_13p6TeV
[2025-07-27 17:06:54]  status=None
[2025-07-27 17:06:54]  status_code=0
[2025-07-27 17:06:54]  storage_token=
[2025-07-27 17:06:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745095294/log.45743349._031680.job.log.tgz.1
[2025-07-27 17:06:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/13/log.45743349._031680.job.log.tgz.1
[2025-07-27 17:06:54]  workdir=None
[2025-07-27 17:06:54] ]
[2025-07-27 17:06:54] 2025-07-27 21:06:16,071 | INFO     | transferring file log.45743349._031680.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745095294/log.45743349._031680.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:06:54] 2025-07-27 21:06:16,071 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745095294/log.45743349._031680.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._031680.job
[2025-07-27 17:06:54] 2025-07-27 21:06:16,093 | INFO     | adding to output.list: log.45743349._031680.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/13/log.45743349._031680.job.log.tg
[2025-07-27 17:06:54] 2025-07-27 21:06:16,094 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:06:54] 2025-07-27 21:06:16,094 | INFO     | summary of transferred files:
[2025-07-27 17:06:54] 2025-07-27 21:06:16,094 | INFO     |  -- lfn=log.45743349._031680.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:06:54] 2025-07-27 21:06:16,094 | INFO     | stage-out finished correctly
[2025-07-27 17:06:54] 2025-07-27 21:06:16,628 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:06:54] 2025-07-27 21:06:16,706 | INFO     | job 6745095294 has state=finished
[2025-07-27 17:06:54] 2025-07-27 21:06:16,707 | INFO     | preparing for final server update for job 6745095294 in state='finished'
[2025-07-27 17:06:54] 2025-07-27 21:06:16,707 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:06:54] 2025-07-27 21:06:16,708 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:06:54] 2025-07-27 21:06:16,708 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:06:54] 2025-07-27 21:06:16,708 | INFO     | job 6745095294 has finished - writing final server update
[2025-07-27 17:06:54] 2025-07-27 21:06:16,708 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:06:54] 2025-07-27 21:06:16,709 | INFO     | executing command: lscpu
[2025-07-27 17:06:54] 2025-07-27 21:06:16,764 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:06:54] 2025-07-27 21:06:18,119 | INFO     | monitor loop #322: job 0:6745095294 is in state 'finished'
[2025-07-27 17:06:54] 2025-07-27 21:06:18,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:06:54] 2025-07-27 21:06:20,622 | INFO     | monitor loop #323: job 0:6745095294 is in state 'finished'
[2025-07-27 17:06:54] 2025-07-27 21:06:20,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:06:54] 2025-07-27 21:06:21,763 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:06:54] 2025-07-27 21:06:21,779 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2665.816142857144
[2025-07-27 17:06:54] 2025-07-27 21:06:21,789 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745095294/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:06:54] 2025-07-27 21:06:21,790 | INFO     | extracted standard info from prmon json
[2025-07-27 17:06:54] 2025-07-27 21:06:21,790 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:06:54] 2025-07-27 21:06:21,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:06:54] 2025-07-27 21:06:21,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:06:54] 2025-07-27 21:06:21,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:06:54] 2025-07-27 21:06:21,793 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:06:54] 2025-07-27 21:06:21,793 | INFO     | sum of square deviations: 81266640.0
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | sum of deviations: -8177418867.0
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | mean x: 1753648305.5
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | mean y: 2469634.53125
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | -- intersect: 176462536637.1572
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | intersect: 176462536637.1572
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | chi2: 0.13269512389988336
[2025-07-27 17:06:54] 2025-07-27 21:06:21,794 | INFO     | -- intersect: 176462536637.1572
[2025-07-27 17:06:54] 2025-07-27 21:06:21,795 | INFO     | current memory leak: -100.62 B/s (using 64 data points, chi2=0.13)
[2025-07-27 17:06:54] 2025-07-27 21:06:21,795 | INFO     | could have reported an average CPU frequency of 2656 MHz (6 samples)
[2025-07-27 17:06:54] 2025-07-27 21:06:21,795 | INFO     | ..............................
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . Timing measurements:
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . get job = 0 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . initial setup = 2 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . payload setup = 7 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . stage-in = 0 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . payload execution = 4297 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . stage-out = 0 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | . log creation = 0 s
[2025-07-27 17:06:54] 2025-07-27 21:06:21,796 | INFO     | ..............................
[2025-07-27 17:06:54] 2025-07-27 21:06:22,118 | INFO     | 
[2025-07-27 17:06:54] 2025-07-27 21:06:22,118 | INFO     | job summary report
[2025-07-27 17:06:54] 2025-07-27 21:06:22,118 | INFO     | --------------------------------------------------
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | PanDA job id: 6745095294
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | task id: 45743349
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | errors: (none)
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | pilot state: finished 
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | transexitcode: 0
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | exeerrorcode: 0
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | exeerrordiag: 
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | exitcode: 0
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | exitmsg: OK
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | cpuconsumptiontime: 45717 s
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | nevents: 400
[2025-07-27 17:06:54] 2025-07-27 21:06:22,119 | INFO     | neventsw: 0
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | pid: 3958240
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | pgrp: 3958240
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | corecount: 12
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | event service: False
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | sizes: {0: 2397303, 1: 2397502, 6: 2397764, 11: 2397792, 4309: 2423733, 4310: 2432731, 4311: 2432915, 4316: 2433109}
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | --------------------------------------------------
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | 
[2025-07-27 17:06:54] 2025-07-27 21:06:22,120 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:06:54] 2025-07-27 21:06:22,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,144 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,144 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,144 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:06:54] 2025-07-27 21:06:22,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:06:54] 2025-07-27 21:06:22,146 | INFO     | job 6745095294 has completed (purged errors)
[2025-07-27 17:06:54] 2025-07-27 21:06:22,146 | INFO     | overall cleanup function is called
[2025-07-27 17:06:54] 2025-07-27 21:06:23,155 | INFO     | --- collectZombieJob: --- 10, [3958240]
[2025-07-27 17:06:54] 2025-07-27 21:06:23,155 | INFO     | zombie collector waiting for pid 3958240
[2025-07-27 17:06:54] 2025-07-27 21:06:23,155 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:06:54] 2025-07-27 21:06:23,156 | INFO     | collected zombie processes
[2025-07-27 17:06:54] 2025-07-27 21:06:23,156 | INFO     | will attempt to kill all subprocesses of pid=3958240
[2025-07-27 17:06:54] 2025-07-27 21:06:23,492 | INFO     | process IDs to be killed: [3958240] (in reverse order)
[2025-07-27 17:06:54] 2025-07-27 21:06:23,577 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:06:54] 2025-07-27 21:06:23,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:06:54] 2025-07-27 21:06:23,588 | INFO     | did not find any defunct processes belonging to 3958240
[2025-07-27 17:06:54] 2025-07-27 21:06:23,599 | INFO     | did not find any defunct processes belonging to 3958240
[2025-07-27 17:06:54] 2025-07-27 21:06:23,599 | INFO     | ready for new job
[2025-07-27 17:06:54] 2025-07-27 21:06:23,599 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:06:54] 2025-07-27 21:06:23,601 | INFO     | ***************************************
[2025-07-27 17:06:54] 2025-07-27 21:06:23,601 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:06:54] 2025-07-27 21:06:23,601 | INFO     | ***************************************
[2025-07-27 17:06:54] 2025-07-27 21:06:23,601 | INFO     | 
[2025-07-27 17:06:54] 2025-07-27 21:06:23,618 | INFO     | architecture information:
[2025-07-27 17:06:54] 2025-07-27 21:06:23,619 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:06:54] 2025-07-27 21:06:23,637 | INFO     | cat /etc/os-release:
[2025-07-27 17:06:54] NAME="CentOS Linux"
[2025-07-27 17:06:54] VERSION="7 (Core)"
[2025-07-27 17:06:54] ID="centos"
[2025-07-27 17:06:54] ID_LIKE="rhel fedora"
[2025-07-27 17:06:54] VERSION_ID="7"
[2025-07-27 17:06:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:06:54] ANSI_COLOR="0;31"
[2025-07-27 17:06:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:06:54] HOME_URL="https://www.centos.org/"
[2025-07-27 17:06:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:06:54] 
[2025-07-27 17:06:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:06:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:06:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:06:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:06:54] 
[2025-07-27 17:06:54] 2025-07-27 21:06:23,637 | INFO     | ***************************************
[2025-07-27 17:06:54] 2025-07-27 21:06:24,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:06:54] 2025-07-27 21:06:24,158 | INFO     | sufficient remaining disk space (76542902272 B)
[2025-07-27 17:06:54] 2025-07-27 21:06:24,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:06:54] 2025-07-27 21:06:24,159 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:06:54] 2025-07-27 21:06:24,159 | INFO     | update_server=False
[2025-07-27 17:06:54] 2025-07-27 21:06:24,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:06:54] 2025-07-27 21:06:24,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:06:54] 2025-07-27 21:06:24,160 | INFO     | aborting loop
[2025-07-27 17:06:54] 2025-07-27 21:06:24,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:06:54] 2025-07-27 21:06:24,502 | INFO     | all data control threads have been joined
[2025-07-27 17:06:54] 2025-07-27 21:06:24,806 | INFO     | all payload control threads have been joined
[2025-07-27 17:06:54] 2025-07-27 21:06:25,164 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:25,165 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:25,200 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:25,405 | INFO     | all job control threads have been joined
[2025-07-27 17:06:54] 2025-07-27 21:06:25,507 | INFO     | [data] control thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:25,811 | INFO     | [payload] control thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:25,875 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,070 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,086 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,135 | INFO     | [job] validate thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,206 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,410 | INFO     | [job] control thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,476 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,531 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:26,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:06:54] 2025-07-27 21:06:27,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:06:54] 2025-07-27 21:06:27,910 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:31,219 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:34,233 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:06:54] 2025-07-27 21:06:35,238 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:06:54] 2025-07-27 21:06:35,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686287099712)>', '<ExcThread(monitor, started 139685791774464)>']
[2025-07-27 17:06:54] 2025-07-27 21:06:40,382 | INFO     | all workflow threads have been joined
[2025-07-27 17:06:54] 2025-07-27 21:06:40,382 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:06:54] 2025-07-27 21:06:40,383 | INFO     | traces error code: 0
[2025-07-27 17:06:54] 2025-07-27 21:06:40,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:06:54] 2025-07-27 21:06:53,788 | INFO     | PID=3951861 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:06:54] 2025-07-27 21:06:53,789 | INFO     | .. there are 15 such processes running
[2025-07-27 17:06:54] 2025-07-27 21:06:53,790 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:06:54] 2025-07-27 21:06:53,790 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:06:54] 2025-07-27 21:06:53,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:06:54] 2025-07-27 21:06:53,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:06:54] 2025-07-27 21:06:53,790 | INFO     | [monitor] control thread has ended
[2025-07-27 17:06:54] 2025-07-27 21:06:53,985 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:06:54] 2025-07-27 21:06:53,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:06:54] 2025-07-27 21:06:53,991 [wrapper] pilotpid: 3951861
[2025-07-27 17:06:54] 2025-07-27 21:06:53,995 [wrapper] Pilot exit status: 0
[2025-07-27 17:06:54] 2025-07-27 21:06:54,011 [wrapper] pandaids: 6745095294
[2025-07-27 17:06:54] 2025-07-27 21:06:54,074 [wrapper] cleanup supervisor_pilot 4158745 3951862
[2025-07-27 17:06:54] 2025-07-27 21:06:54,079 [wrapper] Test setup, not cleaning
[2025-07-27 17:06:54] 2025-07-27 21:06:54,083 [wrapper] apfmon messages muted
[2025-07-27 17:06:54] 2025-07-27 21:06:54,088 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:06:54] 2025-07-27 21:06:54,093 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:06:54]  *** Error codes and diagnostics ***
[2025-07-27 17:06:54]     "exeErrorCode": 0,
[2025-07-27 17:06:54]     "exeErrorDiag": "",
[2025-07-27 17:06:54]     "pilotErrorCode": 0,
[2025-07-27 17:06:54]     "pilotErrorDiag": "",
[2025-07-27 17:06:54]  *** Listing of results directory ***
[2025-07-27 17:06:54] total 346620
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 23:10 pilot3.tar.gz
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 23:43 queuedata.json
[2025-07-27 17:06:54] -rwx------. 1 boincer umatlas     36292 Jul 25 23:44 runpilot2-wrapper.sh
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:06:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:53 run_atlas
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:53 job.xml
[2025-07-27 17:06:54] -rw-r--r--. 2 boincer umatlas 142911688 Jul 27 15:53 EVNT.45743347._001775.pool.root.1
[2025-07-27 17:06:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:53 start_atlas.sh
[2025-07-27 17:06:54] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:53 shared
[2025-07-27 17:06:54] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 15:53 input.tar.gz
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:53 boinc_lockfile
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 15:53 pandaJob.out
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas    980125 Jul 27 15:54 agis_schedconf.cvmfs.json
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:54 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:06:54] drwx------. 4 boincer umatlas      4096 Jul 27 15:54 pilot3
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 17:01 init_data.xml
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas 206550623 Jul 27 17:05 HITS.45743349._031680.pool.root.1
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas       530 Jul 27 17:05 boinc_task_state.xml
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas      1049 Jul 27 17:06 memory_monitor_summary.json
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas    366439 Jul 27 17:06 log.45743349._031680.job.log.tgz.1
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas      7824 Jul 27 17:06 heartbeat.json
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:06 boinc_mmap_file
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:06 wrapper_checkpoint.txt
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas        95 Jul 27 17:06 pilot_heartbeat.json
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas       823 Jul 27 17:06 pilotlog.txt
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas    436424 Jul 27 17:06 log.45743349._031680.job.log.1
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas       357 Jul 27 17:06 output.list
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:06 runtime_log
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas    819200 Jul 27 17:06 result.tar.gz
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 17:06 runtime_log.err
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas       654 Jul 27 17:06 RlKNDmp0kz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmA6zKDmzyxamn.diag
[2025-07-27 17:06:54] -rw-r--r--. 1 boincer umatlas     21486 Jul 27 17:06 stderr.txt
[2025-07-27 17:06:54] HITS file was successfully produced:
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas 206550623 Jul 27 17:05 shared/HITS.pool.root.1
[2025-07-27 17:06:54]  *** Contents of shared directory: ***
[2025-07-27 17:06:54] total 342628
[2025-07-27 17:06:54] -rw-r--r--. 2 boincer umatlas 142911688 Jul 27 15:53 ATLAS.root_0
[2025-07-27 17:06:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:53 start_atlas.sh
[2025-07-27 17:06:54] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 15:53 input.tar.gz
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas 206550623 Jul 27 17:05 HITS.pool.root.1
[2025-07-27 17:06:54] -rw-------. 1 boincer umatlas    819200 Jul 27 17:06 result.tar.gz
17:06:55 (3948197): run_atlas exited; CPU time 45770.825686
17:06:55 (3948197): called boinc_finish(0)

</stderr_txt>
]]>

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