Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:53:37 (607915): wrapper (7.7.26015): starting
11:53:37 (607915): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:53:37] Arguments: --nthreads 12
[2025-07-27 11:53:37] Threads: 12
[2025-07-27 11:53:37] Checking for CVMFS
[2025-07-27 11:53:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:53:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:53:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:53:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:53:38] 2.11.5.0 6493 37527 238100 148821 1 524 37754996 45568000 11890 130560 0 307744998 99.783 205426875 31754 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-27 11:53:38] CVMFS is ok
[2025-07-27 11:53:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:53:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:53:38] Further information can be found at the LHC@home message board.
[2025-07-27 11:53:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:53:38] Checking for apptainer binary...
[2025-07-27 11:53:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:53:38] Running /usr/bin/apptainer --version
[2025-07-27 11:53:38] apptainer version 1.4.1-1.el9
[2025-07-27 11:53:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:53:38] wns0094.triumf.lcg
[2025-07-27 11:53:38] apptainer works
[2025-07-27 11:53:38] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:53:38] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:53:38] Starting ATLAS job with PandaID=6747525585
[2025-07-27 11:53:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 11:57:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | WARNING  | wrong length of table data, x=[1753642501.0], y=[2261.0] (must be same and length>=4)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | could have reported an average CPU frequency of 2520 MHz (4 samples)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | ..............................
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . Timing measurements:
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . get job = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . initial setup = 3 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . payload setup = 17 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . stage-in = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . payload execution = 25 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . stage-out = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . log creation = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | ..............................
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 11:57:53] 2025-07-27 18:57:22,132 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747525585/pilotlog.txt
[2025-07-27 11:57:53] 2025-07-27 18:57:22,142 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-27 11:57:53] - Log from pilotlog.txt -
[2025-07-27 11:57:53] 2025-07-27 18:57:22,129 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6747525585/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | INFO     | extracted standard info from prmon json
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | WARNING  | wrong length of table data, x=[1753642501.0], y=[2261.0] (must be same and length>=4)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | could have reported an average CPU frequency of 2520 MHz (4 samples)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | ..............................
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . Timing measurements:
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . get job = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . initial setup = 3 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . payload setup = 17 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . stage-in = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . payload execution = 25 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . stage-out = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . log creation = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | ..............................
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 11:57:53] 2025-07-27 18:57:22,132 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747525585/pilotlog.txt
[2025-07-27 11:57:53] 2025-07-27 18:57:22,143 | WARNING  | 
[2025-07-27 11:57:53] [begin log extracts]
[2025-07-27 11:57:53] - Log from pilotlog.txt -
[2025-07-27 11:57:53] 2025-07-27 18:57:22,129 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6747525585/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | INFO     | extracted standard info from prmon json
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 11:57:53] 2025-07-27 18:57:22,130 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | WARNING  | wrong length of table data, x=[1753642501.0], y=[2261.0] (must be same and length>=4)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | could have reported an average CPU frequency of 2520 MHz (4 samples)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | ..............................
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . Timing measurements:
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . get job = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . initial setup = 3 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . payload setup = 17 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . stage-in = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . payload execution = 25 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . stage-out = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | . log creation = 0 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | ..............................
[2025-07-27 11:57:53] 2025-07-27 18:57:22,131 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 11:57:53] 2025-07-27 18:57:22,132 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747525585/pilotlog.txt
[2025-07-27 11:57:53] [end log extracts]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,143 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,143 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | 
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | job summary report
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | --------------------------------------------------
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | PanDA job id: 6747525585
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | task id: 45743349
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-27 11:55:12,137 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | pilot state: failed 
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | transexitcode: 65
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | exeerrorcode: 65
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,203 | INFO     | exitcode: 65
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | cpuconsumptiontime: 17 s
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | nevents: 0
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | neventsw: 0
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | pid: 623612
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | pgrp: 623612
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | corecount: 12
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | event service: False
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | sizes: {0: 2397301, 1: 2397500, 2: 2397528, 10: 2397790, 13: 2397818, 46: 2421256, 47: 2425548, 49: 2425604, 169: 2425770}
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | --------------------------------------------------
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | 
[2025-07-27 11:57:53] 2025-07-27 18:57:22,204 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | job 6747525585 has completed (purged errors)
[2025-07-27 11:57:53] 2025-07-27 18:57:22,220 | INFO     | overall cleanup function is called
[2025-07-27 11:57:53] 2025-07-27 18:57:23,226 | INFO     | --- collectZombieJob: --- 10, [623612]
[2025-07-27 11:57:53] 2025-07-27 18:57:23,226 | INFO     | zombie collector waiting for pid 623612
[2025-07-27 11:57:53] 2025-07-27 18:57:23,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 11:57:53] 2025-07-27 18:57:23,226 | INFO     | collected zombie processes
[2025-07-27 11:57:53] 2025-07-27 18:57:23,226 | INFO     | will attempt to kill all subprocesses of pid=623612
[2025-07-27 11:57:53] 2025-07-27 18:57:23,366 | INFO     | process IDs to be killed: [623612] (in reverse order)
[2025-07-27 11:57:53] 2025-07-27 18:57:23,423 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 11:57:53] 2025-07-27 18:57:23,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 11:57:53] 2025-07-27 18:57:23,429 | INFO     | did not find any defunct processes belonging to 623612
[2025-07-27 11:57:53] 2025-07-27 18:57:23,435 | INFO     | did not find any defunct processes belonging to 623612
[2025-07-27 11:57:53] 2025-07-27 18:57:23,435 | INFO     | ready for new job
[2025-07-27 11:57:53] 2025-07-27 18:57:23,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 11:57:53] 2025-07-27 18:57:23,436 | INFO     | ***************************************
[2025-07-27 11:57:53] 2025-07-27 18:57:23,436 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 11:57:53] 2025-07-27 18:57:23,436 | INFO     | ***************************************
[2025-07-27 11:57:53] 2025-07-27 18:57:23,436 | INFO     | 
[2025-07-27 11:57:53] 2025-07-27 18:57:23,438 | INFO     | architecture information:
[2025-07-27 11:57:53] 2025-07-27 18:57:23,439 | INFO     | executing command: cat /etc/os-release
[2025-07-27 11:57:53] 2025-07-27 18:57:23,449 | INFO     | cat /etc/os-release:
[2025-07-27 11:57:53] NAME="CentOS Linux"
[2025-07-27 11:57:53] VERSION="7 (Core)"
[2025-07-27 11:57:53] ID="centos"
[2025-07-27 11:57:53] ID_LIKE="rhel fedora"
[2025-07-27 11:57:53] VERSION_ID="7"
[2025-07-27 11:57:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 11:57:53] ANSI_COLOR="0;31"
[2025-07-27 11:57:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 11:57:53] HOME_URL="https://www.centos.org/"
[2025-07-27 11:57:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 11:57:53] 
[2025-07-27 11:57:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 11:57:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 11:57:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 11:57:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 11:57:53] 
[2025-07-27 11:57:53] 2025-07-27 18:57:23,450 | INFO     | ***************************************
[2025-07-27 11:57:53] 2025-07-27 18:57:23,952 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-27 11:57:53] 2025-07-27 18:57:23,964 | INFO     | sufficient remaining disk space (2046759534592 B)
[2025-07-27 11:57:53] 2025-07-27 18:57:23,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 11:57:53] 2025-07-27 18:57:23,965 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 11:57:53] 2025-07-27 18:57:23,965 | INFO     | update_server=False
[2025-07-27 11:57:53] 2025-07-27 18:57:23,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 11:57:53] 2025-07-27 18:57:23,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:57:53] 2025-07-27 18:57:23,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 11:57:53] 2025-07-27 18:57:24,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 11:57:53] 2025-07-27 18:57:24,630 | INFO     | aborting loop
[2025-07-27 11:57:53] 2025-07-27 18:57:24,893 | INFO     | all job control threads have been joined
[2025-07-27 11:57:53] 2025-07-27 18:57:24,905 | INFO     | all data control threads have been joined
[2025-07-27 11:57:53] 2025-07-27 18:57:24,970 | INFO     | [job] queue monitor thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:24,970 | INFO     | [job] retrieve thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,011 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,202 | INFO     | [payload] validate_post thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,214 | INFO     | all payload control threads have been joined
[2025-07-27 11:57:53] 2025-07-27 18:57:25,333 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,353 | INFO     | [data] copytool_in thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,458 | INFO     | [payload] failed_post thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 11:57:53] 2025-07-27 18:57:25,633 | INFO     | [job] job monitor thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,898 | INFO     | [job] control thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,910 | INFO     | [data] control thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,971 | INFO     | [data] copytool_out thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:25,989 | INFO     | [job] validate thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:26,219 | INFO     | [payload] control thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:26,329 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:29,602 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 11:57:53] 2025-07-27 18:57:31,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140710185822016)>', '<ExcThread(monitor, started 140709797537536)>']
[2025-07-27 11:57:53] 2025-07-27 18:57:36,644 | INFO     | all workflow threads have been joined
[2025-07-27 11:57:53] 2025-07-27 18:57:36,645 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 11:57:53] 2025-07-27 18:57:36,645 | INFO     | traces error code: 0
[2025-07-27 11:57:53] 2025-07-27 18:57:36,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 11:57:53] 2025-07-27 18:57:53,626 | INFO     | PID=616480 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | INFO     | .. there are 20 such processes running
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 11:57:53] 2025-07-27 18:57:53,627 | INFO     | [monitor] control thread has ended
[2025-07-27 11:57:53] 2025-07-27 18:57:53,778 [wrapper] ==== pilot stdout END ====
[2025-07-27 11:57:53] 2025-07-27 18:57:53,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 11:57:53] 2025-07-27 18:57:53,782 [wrapper] pilotpid: 616480
[2025-07-27 11:57:53] 2025-07-27 18:57:53,784 [wrapper] Pilot exit status: 0
[2025-07-27 11:57:53] 2025-07-27 18:57:53,792 [wrapper] pandaids: 6747525585
[2025-07-27 11:57:53] 2025-07-27 18:57:53,828 [wrapper] cleanup supervisor_pilot  616489 616481
[2025-07-27 11:57:53] 2025-07-27 18:57:53,830 [wrapper] Test setup, not cleaning
[2025-07-27 11:57:53] 2025-07-27 18:57:53,832 [wrapper] apfmon messages muted
[2025-07-27 11:57:53] 2025-07-27 18:57:53,834 [wrapper] ==== wrapper stdout END ====
[2025-07-27 11:57:53] 2025-07-27 18:57:53,836 [wrapper] ==== wrapper stderr END ====
[2025-07-27 11:57:53]  *** Error codes and diagnostics ***
[2025-07-27 11:57:53]     "exeErrorCode": 65,
[2025-07-27 11:57:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 11:57:53]     "pilotErrorCode": 1305,
[2025-07-27 11:57:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 11:57:53]  *** Listing of results directory ***
[2025-07-27 11:57:53] total 145248
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc    530466 Jul 27 09:02 pilot3.tar.gz
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc      5112 Jul 27 09:09 queuedata.json
[2025-07-27 11:57:53] -rwx------. 1 boinc boinc     36292 Jul 27 09:10 runpilot2-wrapper.sh
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc       100 Jul 27 11:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 11:57:53] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 11:53 run_atlas
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc       105 Jul 27 11:53 job.xml
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc      6596 Jul 27 11:53 init_data.xml
[2025-07-27 11:57:53] -rw-r--r--. 2 boinc boinc 144658847 Jul 27 11:53 EVNT.45743347._002869.pool.root.1
[2025-07-27 11:57:53] -rw-r--r--. 2 boinc boinc     15095 Jul 27 11:53 start_atlas.sh
[2025-07-27 11:57:53] drwxrwx--x. 2 boinc boinc      4096 Jul 27 11:53 shared
[2025-07-27 11:57:53] -rw-r--r--. 2 boinc boinc    542898 Jul 27 11:53 input.tar.gz
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc         0 Jul 27 11:53 boinc_lockfile
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc      2563 Jul 27 11:53 pandaJob.out
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc    980125 Jul 27 11:54 agis_schedconf.cvmfs.json
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc   1593052 Jul 27 11:54 agis_ddmendpoints.agis.ALL.json
[2025-07-27 11:57:53] drwx------. 4 boinc boinc      4096 Jul 27 11:54 pilot3
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc       522 Jul 27 11:55 boinc_task_state.xml
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc       959 Jul 27 11:55 memory_monitor_summary.json
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc     20781 Jul 27 11:55 log.45743349._052132.job.log.tgz.1
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc        95 Jul 27 11:57 pilot_heartbeat.json
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc      8428 Jul 27 11:57 heartbeat.json
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc        22 Jul 27 11:57 wrapper_checkpoint.txt
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc       892 Jul 27 11:57 pilotlog.txt
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc      8192 Jul 27 11:57 boinc_mmap_file
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc     77752 Jul 27 11:57 log.45743349._052132.job.log.1
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc       188 Jul 27 11:57 output.list
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc       620 Jul 27 11:57 runtime_log
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc    122880 Jul 27 11:57 result.tar.gz
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc      8485 Jul 27 11:57 runtime_log.err
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc       645 Jul 27 11:57 PzeNDmd8I07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmInVLDmQrCdAo.diag
[2025-07-27 11:57:53] -rw-r--r--. 1 boinc boinc     21788 Jul 27 11:57 stderr.txt
[2025-07-27 11:57:53] No HITS result produced
[2025-07-27 11:57:53]  *** Contents of shared directory: ***
[2025-07-27 11:57:53] total 141940
[2025-07-27 11:57:53] -rw-r--r--. 2 boinc boinc 144658847 Jul 27 11:53 ATLAS.root_0
[2025-07-27 11:57:53] -rw-r--r--. 2 boinc boinc     15095 Jul 27 11:53 start_atlas.sh
[2025-07-27 11:57:53] -rw-r--r--. 2 boinc boinc    542898 Jul 27 11:53 input.tar.gz
[2025-07-27 11:57:53] -rw-------. 1 boinc boinc    122880 Jul 27 11:57 result.tar.gz
11:57:55 (607915): run_atlas exited; CPU time 22.584258
11:57:55 (607915): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN