Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:43:35 (818715): wrapper (7.7.26015): starting
14:43:35 (818715): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 14:43:35] Arguments: --nthreads 8
[2025-07-27 14:43:35] Threads: 8
[2025-07-27 14:43:35] Checking for CVMFS
[2025-07-27 14:43:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:43:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:43:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:43:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:43:35] 2.13.1.0 4026694 8549 91852 148821 0 188 21314898 40960001 12017 16776704 0 119990633 99.999 306867 59528 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 14:43:35] CVMFS is ok
[2025-07-27 14:43:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:43:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:43:35] Further information can be found at the LHC@home message board.
[2025-07-27 14:43:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:43:35] Checking for apptainer binary...
[2025-07-27 14:43:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:43:35] Running /usr/bin/apptainer --version
[2025-07-27 14:43:35] apptainer version 1.4.1-1.el9
[2025-07-27 14:43:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:43:35] c-208-38.aglt2.org
[2025-07-27 14:43:35] apptainer works
[2025-07-27 14:43:35] Set ATHENA_PROC_NUMBER=8
[2025-07-27 14:43:35] Set ATHENA_CORE_NUMBER=8
[2025-07-27 14:43:35] Starting ATLAS job with PandaID=6744925587
[2025-07-27 14:43:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:35:25]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:35:25]  lfn=log.45743349._007413.job.log.tgz.1
[2025-07-27 15:35:25]  mtime=0
[2025-07-27 15:35:25]  protocol_id=None
[2025-07-27 15:35:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 15:35:25]  replicas=None
[2025-07-27 15:35:25]  scope=mc23_13p6TeV
[2025-07-27 15:35:25]  status=None
[2025-07-27 15:35:25]  status_code=0
[2025-07-27 15:35:25]  storage_token=
[2025-07-27 15:35:25]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6744925587/log.45743349._007413.job.log.tgz.1
[2025-07-27 15:35:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/d7/log.45743349._007413.job.log.tgz.1
[2025-07-27 15:35:25]  workdir=None
[2025-07-27 15:35:25] ]
[2025-07-27 15:35:25] 2025-07-27 19:34:48,662 | INFO     | transferring file log.45743349._007413.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6744925587/log.45743349._007413.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 15:35:25] 2025-07-27 19:34:48,662 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6744925587/log.45743349._007413.job.log.tgz.1 /tmp/boinchome/slots/7/log.45743349._007413.job
[2025-07-27 15:35:25] 2025-07-27 19:34:48,677 | INFO     | adding to output.list: log.45743349._007413.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/30/d7/log.45743349._007413.job.log.tg
[2025-07-27 15:35:25] 2025-07-27 19:34:48,678 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 15:35:25] 2025-07-27 19:34:48,678 | INFO     | summary of transferred files:
[2025-07-27 15:35:25] 2025-07-27 19:34:48,678 | INFO     |  -- lfn=log.45743349._007413.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 15:35:25] 2025-07-27 19:34:48,678 | INFO     | stage-out finished correctly
[2025-07-27 15:35:25] 2025-07-27 19:34:48,732 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 15:35:25] 2025-07-27 19:34:49,765 | WARNING  | process 830860 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 15:35:25] 2025-07-27 19:34:49,765 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6744925587/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:35:25] 2025-07-27 19:34:50,093 | INFO     | number of running child processes to parent process 830860: 1
[2025-07-27 15:35:25] 2025-07-27 19:34:50,093 | INFO     | maximum number of monitored processes: 6
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | job 6744925587 has state=finished
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | preparing for final server update for job 6744925587 in state='finished'
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | this job has now completed (state=finished)
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | log transfer has been attempted: DONE
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | job 6744925587 has finished - writing final server update
[2025-07-27 15:35:25] 2025-07-27 19:34:50,271 | INFO     | total number of processed events: 400 (read)
[2025-07-27 15:35:25] 2025-07-27 19:34:50,272 | INFO     | executing command: lscpu
[2025-07-27 15:35:25] 2025-07-27 19:34:50,325 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 15:35:25] 2025-07-27 19:34:51,881 | INFO     | 3070s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 15:35:25] 2025-07-27 19:34:52,596 | INFO     | monitor loop #228: job 0:6744925587 is in state 'finished'
[2025-07-27 15:35:25] 2025-07-27 19:34:52,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,767 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 15:35:25] 2025-07-27 19:34:53,772 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3670.6674999999996
[2025-07-27 15:35:25] 2025-07-27 19:34:53,785 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6744925587/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,785 | INFO     | extracted standard info from prmon json
[2025-07-27 15:35:25] 2025-07-27 19:34:53,785 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 15:35:25] 2025-07-27 19:34:53,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 15:35:25] 2025-07-27 19:34:53,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 15:35:25] 2025-07-27 19:34:53,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 15:35:25] 2025-07-27 19:34:53,786 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:35:25] 2025-07-27 19:34:53,786 | INFO     | sum of square deviations: 24640462.0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,786 | INFO     | sum of deviations: -179247097.0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,786 | INFO     | mean x: 1753643432.0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | mean y: 2529604.465116279
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | -- intersect: 12759412748.909279
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | intersect: 12759412748.909279
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | chi2: 0.0005047812017547677
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | -- intersect: 12759412748.909279
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | current memory leak: -7.27 B/s (using 43 data points, chi2=0.00)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | could have reported an average CPU frequency of 3669 MHz (5 samples)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | ..............................
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . Timing measurements:
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . get job = 0 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . initial setup = 2 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . payload setup = 4 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . stage-in = 0 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . payload execution = 3041 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,787 | INFO     | . stage-out = 0 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,788 | INFO     | . log creation = 0 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,788 | INFO     | ..............................
[2025-07-27 15:35:25] 2025-07-27 19:34:53,843 | INFO     | 
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | job summary report
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | --------------------------------------------------
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | PanDA job id: 6744925587
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | task id: 45743349
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | errors: (none)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | pilot state: finished 
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | transexitcode: 0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | exeerrorcode: 0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | exeerrordiag: 
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | exitcode: 0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | exitmsg: OK
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | cpuconsumptiontime: 22766 s
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | nevents: 400
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | neventsw: 0
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | pid: 830860
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | pgrp: 830860
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | corecount: 8
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | event service: False
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | sizes: {0: 2397469, 3: 2397731, 11: 2397759, 3049: 2423228, 3050: 2423227, 3051: 2432465, 3056: 2432635}
[2025-07-27 15:35:25] 2025-07-27 19:34:53,844 | INFO     | --------------------------------------------------
[2025-07-27 15:35:25] 2025-07-27 19:34:53,845 | INFO     | 
[2025-07-27 15:35:25] 2025-07-27 19:34:53,845 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-07-27 15:35:25] 2025-07-27 19:34:53,861 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:35:25] 2025-07-27 19:34:53,862 | INFO     | job 6744925587 has completed (purged errors)
[2025-07-27 15:35:25] 2025-07-27 19:34:53,863 | INFO     | overall cleanup function is called
[2025-07-27 15:35:25] 2025-07-27 19:34:54,870 | INFO     | --- collectZombieJob: --- 10, [830860]
[2025-07-27 15:35:25] 2025-07-27 19:34:54,871 | INFO     | zombie collector waiting for pid 830860
[2025-07-27 15:35:25] 2025-07-27 19:34:54,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:35:25] 2025-07-27 19:34:54,871 | INFO     | collected zombie processes
[2025-07-27 15:35:25] 2025-07-27 19:34:54,871 | INFO     | will attempt to kill all subprocesses of pid=830860
[2025-07-27 15:35:25] 2025-07-27 19:34:55,196 | INFO     | process IDs to be killed: [830860] (in reverse order)
[2025-07-27 15:35:25] 2025-07-27 19:34:55,312 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:35:25] 2025-07-27 19:34:55,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:35:25] 2025-07-27 19:34:55,328 | INFO     | did not find any defunct processes belonging to 830860
[2025-07-27 15:35:25] 2025-07-27 19:34:55,340 | INFO     | did not find any defunct processes belonging to 830860
[2025-07-27 15:35:25] 2025-07-27 19:34:55,340 | INFO     | ready for new job
[2025-07-27 15:35:25] 2025-07-27 19:34:55,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:35:25] 2025-07-27 19:34:55,341 | INFO     | ***************************************
[2025-07-27 15:35:25] 2025-07-27 19:34:55,342 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:35:25] 2025-07-27 19:34:55,342 | INFO     | ***************************************
[2025-07-27 15:35:25] 2025-07-27 19:34:55,342 | INFO     | 
[2025-07-27 15:35:25] 2025-07-27 19:34:55,347 | INFO     | architecture information:
[2025-07-27 15:35:25] 2025-07-27 19:34:55,347 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:35:25] 2025-07-27 19:34:55,357 | INFO     | cat /etc/os-release:
[2025-07-27 15:35:25] NAME="CentOS Linux"
[2025-07-27 15:35:25] VERSION="7 (Core)"
[2025-07-27 15:35:25] ID="centos"
[2025-07-27 15:35:25] ID_LIKE="rhel fedora"
[2025-07-27 15:35:25] VERSION_ID="7"
[2025-07-27 15:35:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:35:25] ANSI_COLOR="0;31"
[2025-07-27 15:35:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:35:25] HOME_URL="https://www.centos.org/"
[2025-07-27 15:35:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:35:25] 
[2025-07-27 15:35:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:35:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:35:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:35:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:35:25] 
[2025-07-27 15:35:25] 2025-07-27 19:34:55,357 | INFO     | ***************************************
[2025-07-27 15:35:25] 2025-07-27 19:34:55,860 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-07-27 15:35:25] 2025-07-27 19:34:55,877 | INFO     | sufficient remaining disk space (164023500800 B)
[2025-07-27 15:35:25] 2025-07-27 19:34:55,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:35:25] 2025-07-27 19:34:55,877 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:35:25] 2025-07-27 19:34:55,877 | INFO     | update_server=False
[2025-07-27 15:35:25] 2025-07-27 19:34:55,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:35:25] 2025-07-27 19:34:56,063 | INFO     | all job control threads have been joined
[2025-07-27 15:35:25] 2025-07-27 19:34:56,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:35:25] 2025-07-27 19:34:56,104 | INFO     | aborting loop
[2025-07-27 15:35:25] 2025-07-27 19:34:56,660 | INFO     | all payload control threads have been joined
[2025-07-27 15:35:25] 2025-07-27 19:34:56,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:35:25] 2025-07-27 19:34:56,883 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:56,974 | INFO     | all data control threads have been joined
[2025-07-27 15:35:25] 2025-07-27 19:34:57,069 | INFO     | [job] control thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,109 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,270 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,519 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,666 | INFO     | [payload] control thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,687 | INFO     | [job] validate thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,827 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,938 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,978 | INFO     | [data] control thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:57,994 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:58,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:58,115 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:58,748 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:34:58,854 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:35:25] 2025-07-27 19:34:59,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:35:25] 2025-07-27 19:34:59,858 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:35:03,300 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:35:25] 2025-07-27 19:35:03,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591138600768)>', '<ExcThread(monitor, started 140590511548160)>']
[2025-07-27 15:35:25] 2025-07-27 19:35:08,383 | INFO     | all workflow threads have been joined
[2025-07-27 15:35:25] 2025-07-27 19:35:08,383 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:35:25] 2025-07-27 19:35:08,383 | INFO     | traces error code: 0
[2025-07-27 15:35:25] 2025-07-27 19:35:08,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | INFO     | PID=822395 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | INFO     | .. there are 16 such processes running
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:35:25] 2025-07-27 19:35:25,397 | INFO     | [monitor] control thread has ended
[2025-07-27 15:35:25] 2025-07-27 19:35:25,469 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:35:25] 2025-07-27 19:35:25,471 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:35:25] 2025-07-27 19:35:25,473 [wrapper] pilotpid: 822395
[2025-07-27 15:35:25] 2025-07-27 19:35:25,475 [wrapper] Pilot exit status: 0
[2025-07-27 15:35:25] 2025-07-27 19:35:25,482 [wrapper] pandaids: 6744925587
[2025-07-27 15:35:25] 2025-07-27 19:35:25,561 [wrapper] cleanup supervisor_pilot 1029576 822396
[2025-07-27 15:35:25] 2025-07-27 19:35:25,564 [wrapper] Test setup, not cleaning
[2025-07-27 15:35:25] 2025-07-27 19:35:25,566 [wrapper] apfmon messages muted
[2025-07-27 15:35:25] 2025-07-27 19:35:25,568 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:35:25] 2025-07-27 19:35:25,570 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:35:25]  *** Error codes and diagnostics ***
[2025-07-27 15:35:25]     "exeErrorCode": 0,
[2025-07-27 15:35:25]     "exeErrorDiag": "",
[2025-07-27 15:35:25]     "pilotErrorCode": 0,
[2025-07-27 15:35:25]     "pilotErrorDiag": "",
[2025-07-27 15:35:25]  *** Listing of results directory ***
[2025-07-27 15:35:25] total 429808
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 15:15 queuedata.json
[2025-07-27 15:35:25] -rwx------. 1 boincer umatlas     36292 Jul 24 15:16 runpilot2-wrapper.sh
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas       100 Jul 27 14:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:35:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 14:43 run_atlas
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas       105 Jul 27 14:43 job.xml
[2025-07-27 15:35:25] -rw-r--r--. 2 boincer umatlas 230326198 Jul 27 14:43 EVNT.45743347._000391.pool.root.1
[2025-07-27 15:35:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:43 start_atlas.sh
[2025-07-27 15:35:25] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 14:43 shared
[2025-07-27 15:35:25] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 14:43 input.tar.gz
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas         0 Jul 27 14:43 boinc_lockfile
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 14:43 pandaJob.out
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas    980125 Jul 27 14:43 agis_schedconf.cvmfs.json
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas   1593052 Jul 27 14:43 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:35:25] drwx------. 4 boincer umatlas      4096 Jul 27 14:43 pilot3
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas      7173 Jul 27 15:31 init_data.xml
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas 204682491 Jul 27 15:34 HITS.45743349._007413.pool.root.1
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas       529 Jul 27 15:34 boinc_task_state.xml
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas      1024 Jul 27 15:34 memory_monitor_summary.json
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas    299473 Jul 27 15:34 log.45743349._007413.job.log.tgz.1
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas        95 Jul 27 15:34 pilot_heartbeat.json
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas      7763 Jul 27 15:34 heartbeat.json
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 15:35 boinc_mmap_file
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas        27 Jul 27 15:35 wrapper_checkpoint.txt
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas       822 Jul 27 15:35 pilotlog.txt
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas    320254 Jul 27 15:35 log.45743349._007413.job.log.1
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas       357 Jul 27 15:35 output.list
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas       620 Jul 27 15:35 runtime_log
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas    634880 Jul 27 15:35 result.tar.gz
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas       650 Jul 27 15:35 vIEMDmTbGz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2HNLDmdv0lDn.diag
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 15:35 runtime_log.err
[2025-07-27 15:35:25] -rw-r--r--. 1 boincer umatlas     21689 Jul 27 15:35 stderr.txt
[2025-07-27 15:35:25] HITS file was successfully produced:
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas 204682491 Jul 27 15:34 shared/HITS.pool.root.1
[2025-07-27 15:35:25]  *** Contents of shared directory: ***
[2025-07-27 15:35:25] total 425992
[2025-07-27 15:35:25] -rw-r--r--. 2 boincer umatlas 230326198 Jul 27 14:43 ATLAS.root_0
[2025-07-27 15:35:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:43 start_atlas.sh
[2025-07-27 15:35:25] -rw-r--r--. 2 boincer umatlas    542883 Jul 27 14:43 input.tar.gz
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas 204682491 Jul 27 15:34 HITS.pool.root.1
[2025-07-27 15:35:25] -rw-------. 1 boincer umatlas    634880 Jul 27 15:35 result.tar.gz
15:35:26 (818715): run_atlas exited; CPU time 22837.235231
15:35:26 (818715): called boinc_finish(0)

</stderr_txt>
]]>

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