Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:53:56 (1682337): wrapper (7.7.26015): starting
15:53:56 (1682337): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:53:56] Arguments: --nthreads 12
[2025-07-27 15:53:56] Threads: 12
[2025-07-27 15:53:56] Checking for CVMFS
[2025-07-27 15:53:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:53:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:53:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:53:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:53:57] 2.13.0.0 633399 18809 329368 148822 2 551 24777335 32935936 7875 16776704 1 37280604 99.552 79555315 30909 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 15:53:57] CVMFS is ok
[2025-07-27 15:53:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:53:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:53:57] Further information can be found at the LHC@home message board.
[2025-07-27 15:53:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:53:57] Checking for apptainer binary...
[2025-07-27 15:53:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:53:57] Running /usr/bin/apptainer --version
[2025-07-27 15:53:57] apptainer version 1.4.1-1.el9
[2025-07-27 15:53:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:53:57] c6-6-39-1.aglt2.org
[2025-07-27 15:53:57] apptainer works
[2025-07-27 15:53:57] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:53:57] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:53:57] Starting ATLAS job with PandaID=6747412053
[2025-07-27 15:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:07:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:07:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 17:07:53]  replicas=None
[2025-07-27 17:07:53]  scope=mc23_13p6TeV
[2025-07-27 17:07:53]  status=None
[2025-07-27 17:07:53]  status_code=0
[2025-07-27 17:07:53]  storage_token=
[2025-07-27 17:07:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412053/log.45743349._049186.job.log.tgz.1
[2025-07-27 17:07:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/64/log.45743349._049186.job.log.tgz.1
[2025-07-27 17:07:53]  workdir=None
[2025-07-27 17:07:53] ]
[2025-07-27 17:07:53] 2025-07-27 21:07:12,206 | INFO     | transferring file log.45743349._049186.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412053/log.45743349._049186.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:07:53] 2025-07-27 21:07:12,206 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412053/log.45743349._049186.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049186.job
[2025-07-27 17:07:53] 2025-07-27 21:07:12,231 | INFO     | adding to output.list: log.45743349._049186.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2d/64/log.45743349._049186.job.log.tg
[2025-07-27 17:07:53] 2025-07-27 21:07:12,232 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:07:53] 2025-07-27 21:07:12,232 | INFO     | summary of transferred files:
[2025-07-27 17:07:53] 2025-07-27 21:07:12,232 | INFO     |  -- lfn=log.45743349._049186.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:07:53] 2025-07-27 21:07:12,233 | INFO     | stage-out finished correctly
[2025-07-27 17:07:53] 2025-07-27 21:07:13,476 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:07:53] 2025-07-27 21:07:13,758 | INFO     | monitor loop #322: job 0:6747412053 is in state 'finished'
[2025-07-27 17:07:53] 2025-07-27 21:07:13,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:07:53] 2025-07-27 21:07:14,912 | INFO     | PID=1686137 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 17:07:53] 2025-07-27 21:07:14,912 | INFO     | .. there are 11 such processes running
[2025-07-27 17:07:53] 2025-07-27 21:07:15,008 | INFO     | job 6747412053 has state=finished
[2025-07-27 17:07:53] 2025-07-27 21:07:15,008 | INFO     | preparing for final server update for job 6747412053 in state='finished'
[2025-07-27 17:07:53] 2025-07-27 21:07:15,076 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 17:07:53] 2025-07-27 21:07:15,077 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:07:53] 2025-07-27 21:07:15,077 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:07:53] 2025-07-27 21:07:15,077 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:07:53] 2025-07-27 21:07:15,077 | INFO     | job 6747412053 has finished - writing final server update
[2025-07-27 17:07:53] 2025-07-27 21:07:15,078 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:07:53] 2025-07-27 21:07:15,079 | INFO     | executing command: lscpu
[2025-07-27 17:07:53] 2025-07-27 21:07:15,139 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:07:53] 2025-07-27 21:07:16,261 | INFO     | monitor loop #323: job 0:6747412053 is in state 'finished'
[2025-07-27 17:07:53] 2025-07-27 21:07:16,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:07:53] 2025-07-27 21:07:18,765 | INFO     | monitor loop #324: job 0:6747412053 is in state 'finished'
[2025-07-27 17:07:53] 2025-07-27 21:07:18,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,306 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:07:53] 2025-07-27 21:07:20,326 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2863.989017857143
[2025-07-27 17:07:53] 2025-07-27 21:07:20,335 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412053/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,336 | INFO     | extracted standard info from prmon json
[2025-07-27 17:07:53] 2025-07-27 21:07:20,337 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:07:53] 2025-07-27 21:07:20,337 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:07:53] 2025-07-27 21:07:20,337 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:07:53] 2025-07-27 21:07:20,337 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:07:53] 2025-07-27 21:07:20,339 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | sum of square deviations: 85136480.0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | sum of deviations: -9128549410.999998
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | mean x: 1753648334.0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | mean y: 2490946.630769231
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | -- intersect: 188033115027.3636
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | intersect: 188033115027.3636
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | chi2: 0.13759562502151135
[2025-07-27 17:07:53] 2025-07-27 21:07:20,340 | INFO     | -- intersect: 188033115027.3636
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | current memory leak: -107.22 B/s (using 65 data points, chi2=0.14)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | could have reported an average CPU frequency of 2824 MHz (6 samples)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | ..............................
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | . Timing measurements:
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | . get job = 0 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | . initial setup = 2 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | . payload setup = 7 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,341 | INFO     | . stage-in = 0 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,342 | INFO     | . payload execution = 4355 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,342 | INFO     | . stage-out = 0 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,342 | INFO     | . log creation = 0 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,342 | INFO     | ..............................
[2025-07-27 17:07:53] 2025-07-27 21:07:20,426 | INFO     | 
[2025-07-27 17:07:53] 2025-07-27 21:07:20,426 | INFO     | job summary report
[2025-07-27 17:07:53] 2025-07-27 21:07:20,426 | INFO     | --------------------------------------------------
[2025-07-27 17:07:53] 2025-07-27 21:07:20,426 | INFO     | PanDA job id: 6747412053
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | task id: 45743349
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | errors: (none)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | pilot state: finished 
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | transexitcode: 0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | exeerrorcode: 0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | exeerrordiag: 
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | exitcode: 0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | exitmsg: OK
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | cpuconsumptiontime: 46768 s
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | nevents: 400
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | neventsw: 0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | pid: 1694005
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | pgrp: 1694005
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | corecount: 12
[2025-07-27 17:07:53] 2025-07-27 21:07:20,427 | INFO     | event service: False
[2025-07-27 17:07:53] 2025-07-27 21:07:20,428 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4365: 2423664, 4366: 2432662, 4368: 2432718, 4374: 2433040}
[2025-07-27 17:07:53] 2025-07-27 21:07:20,428 | INFO     | --------------------------------------------------
[2025-07-27 17:07:53] 2025-07-27 21:07:20,428 | INFO     | 
[2025-07-27 17:07:53] 2025-07-27 21:07:20,428 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:07:53] 2025-07-27 21:07:20,449 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,450 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | job 6747412053 has completed (purged errors)
[2025-07-27 17:07:53] 2025-07-27 21:07:20,451 | INFO     | overall cleanup function is called
[2025-07-27 17:07:53] 2025-07-27 21:07:21,458 | INFO     | --- collectZombieJob: --- 10, [1694005]
[2025-07-27 17:07:53] 2025-07-27 21:07:21,459 | INFO     | zombie collector waiting for pid 1694005
[2025-07-27 17:07:53] 2025-07-27 21:07:21,459 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:07:53] 2025-07-27 21:07:21,459 | INFO     | collected zombie processes
[2025-07-27 17:07:53] 2025-07-27 21:07:21,459 | INFO     | will attempt to kill all subprocesses of pid=1694005
[2025-07-27 17:07:53] 2025-07-27 21:07:21,728 | INFO     | process IDs to be killed: [1694005] (in reverse order)
[2025-07-27 17:07:53] 2025-07-27 21:07:21,831 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:07:53] 2025-07-27 21:07:21,832 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:07:53] 2025-07-27 21:07:21,847 | INFO     | did not find any defunct processes belonging to 1694005
[2025-07-27 17:07:53] 2025-07-27 21:07:21,864 | INFO     | did not find any defunct processes belonging to 1694005
[2025-07-27 17:07:53] 2025-07-27 21:07:21,864 | INFO     | ready for new job
[2025-07-27 17:07:53] 2025-07-27 21:07:21,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:07:53] 2025-07-27 21:07:21,868 | INFO     | ***************************************
[2025-07-27 17:07:53] 2025-07-27 21:07:21,868 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:07:53] 2025-07-27 21:07:21,868 | INFO     | ***************************************
[2025-07-27 17:07:53] 2025-07-27 21:07:21,868 | INFO     | 
[2025-07-27 17:07:53] 2025-07-27 21:07:21,884 | INFO     | architecture information:
[2025-07-27 17:07:53] 2025-07-27 21:07:21,886 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:07:53] 2025-07-27 21:07:21,906 | INFO     | cat /etc/os-release:
[2025-07-27 17:07:53] NAME="CentOS Linux"
[2025-07-27 17:07:53] VERSION="7 (Core)"
[2025-07-27 17:07:53] ID="centos"
[2025-07-27 17:07:53] ID_LIKE="rhel fedora"
[2025-07-27 17:07:53] VERSION_ID="7"
[2025-07-27 17:07:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:07:53] ANSI_COLOR="0;31"
[2025-07-27 17:07:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:07:53] HOME_URL="https://www.centos.org/"
[2025-07-27 17:07:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:07:53] 
[2025-07-27 17:07:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:07:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:07:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:07:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:07:53] 
[2025-07-27 17:07:53] 2025-07-27 21:07:21,906 | INFO     | ***************************************
[2025-07-27 17:07:53] 2025-07-27 21:07:22,410 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:07:53] 2025-07-27 21:07:22,431 | INFO     | sufficient remaining disk space (76367790080 B)
[2025-07-27 17:07:53] 2025-07-27 21:07:22,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:07:53] 2025-07-27 21:07:22,432 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:07:53] 2025-07-27 21:07:22,432 | INFO     | update_server=False
[2025-07-27 17:07:53] 2025-07-27 21:07:22,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:07:53] 2025-07-27 21:07:22,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:07:53] 2025-07-27 21:07:22,433 | INFO     | aborting loop
[2025-07-27 17:07:53] 2025-07-27 21:07:22,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:07:53] 2025-07-27 21:07:22,850 | INFO     | all data control threads have been joined
[2025-07-27 17:07:53] 2025-07-27 21:07:23,126 | INFO     | all payload control threads have been joined
[2025-07-27 17:07:53] 2025-07-27 21:07:23,160 | INFO     | all job control threads have been joined
[2025-07-27 17:07:53] 2025-07-27 21:07:23,438 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:23,439 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:23,552 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:23,584 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:23,855 | INFO     | [data] control thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:23,977 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:07:53] 2025-07-27 21:07:24,131 | INFO     | [payload] control thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,166 | INFO     | [job] control thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,258 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,299 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,710 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,848 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:24,880 | INFO     | [job] validate thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:25,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:07:53] 2025-07-27 21:07:26,443 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:28,094 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:32,611 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:07:53] 2025-07-27 21:07:33,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:07:53] 2025-07-27 21:07:35,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140479230437184)>', '<ExcThread(monitor, started 140478582355712)>']
[2025-07-27 17:07:53] 2025-07-27 21:07:40,265 | INFO     | all workflow threads have been joined
[2025-07-27 17:07:53] 2025-07-27 21:07:40,265 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:07:53] 2025-07-27 21:07:40,266 | INFO     | traces error code: 0
[2025-07-27 17:07:53] 2025-07-27 21:07:40,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:07:53] 2025-07-27 21:07:53,521 | INFO     | PID=1686137 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:07:53] 2025-07-27 21:07:53,523 | INFO     | .. there are 11 such processes running
[2025-07-27 17:07:53] 2025-07-27 21:07:53,523 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:07:53] 2025-07-27 21:07:53,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:07:53] 2025-07-27 21:07:53,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:07:53] 2025-07-27 21:07:53,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:07:53] 2025-07-27 21:07:53,524 | INFO     | [monitor] control thread has ended
[2025-07-27 17:07:53] 2025-07-27 21:07:53,780 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:07:53] 2025-07-27 21:07:53,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:07:53] 2025-07-27 21:07:53,788 [wrapper] pilotpid: 1686137
[2025-07-27 17:07:53] 2025-07-27 21:07:53,792 [wrapper] Pilot exit status: 0
[2025-07-27 17:07:53] 2025-07-27 21:07:53,807 [wrapper] pandaids: 6747412053
[2025-07-27 17:07:53] 2025-07-27 21:07:53,895 [wrapper] cleanup supervisor_pilot 1881176 1686138
[2025-07-27 17:07:53] 2025-07-27 21:07:53,900 [wrapper] Test setup, not cleaning
[2025-07-27 17:07:53] 2025-07-27 21:07:53,904 [wrapper] apfmon messages muted
[2025-07-27 17:07:53] 2025-07-27 21:07:53,908 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:07:53] 2025-07-27 21:07:53,912 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:07:53]  *** Error codes and diagnostics ***
[2025-07-27 17:07:53]     "exeErrorCode": 0,
[2025-07-27 17:07:53]     "exeErrorDiag": "",
[2025-07-27 17:07:53]     "pilotErrorCode": 0,
[2025-07-27 17:07:53]     "pilotErrorDiag": "",
[2025-07-27 17:07:53]  *** Listing of results directory ***
[2025-07-27 17:07:54] total 433008
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 17:07:54] -rwx------. 1 boincer umatlas     36292 Jul 27 09:32 runpilot2-wrapper.sh
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:32 queuedata.json
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:07:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:53 run_atlas
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:53 job.xml
[2025-07-27 17:07:54] -rw-r--r--. 2 boincer umatlas 228480309 Jul 27 15:53 EVNT.45743347._002718.pool.root.1
[2025-07-27 17:07:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:53 start_atlas.sh
[2025-07-27 17:07:54] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:53 shared
[2025-07-27 17:07:54] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 15:53 input.tar.gz
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:53 boinc_lockfile
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 15:53 pandaJob.out
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas    980125 Jul 27 15:54 agis_schedconf.cvmfs.json
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:54 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:07:54] drwx------. 4 boincer umatlas      4096 Jul 27 15:54 pilot3
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 17:01 init_data.xml
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas 209434652 Jul 27 17:06 HITS.45743349._049186.pool.root.1
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:06 boinc_task_state.xml
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas      1038 Jul 27 17:07 memory_monitor_summary.json
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas    368648 Jul 27 17:07 log.45743349._049186.job.log.tgz.1
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas      7826 Jul 27 17:07 heartbeat.json
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:07 boinc_mmap_file
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:07 wrapper_checkpoint.txt
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas       823 Jul 27 17:07 pilotlog.txt
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas        95 Jul 27 17:07 pilot_heartbeat.json
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas    436083 Jul 27 17:07 log.45743349._049186.job.log.1
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas       357 Jul 27 17:07 output.list
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:07 runtime_log
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas    819200 Jul 27 17:07 result.tar.gz
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 17:07 runtime_log.err
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas       654 Jul 27 17:07 mGxLDmQfG07n9Rq4apOajLDm4fhM0noT9bVof3QYDmnb2KDm5pmXMm.diag
[2025-07-27 17:07:54] -rw-r--r--. 1 boincer umatlas     21972 Jul 27 17:07 stderr.txt
[2025-07-27 17:07:54] HITS file was successfully produced:
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas 209434652 Jul 27 17:06 shared/HITS.pool.root.1
[2025-07-27 17:07:54]  *** Contents of shared directory: ***
[2025-07-27 17:07:54] total 429012
[2025-07-27 17:07:54] -rw-r--r--. 2 boincer umatlas 228480309 Jul 27 15:53 ATLAS.root_0
[2025-07-27 17:07:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:53 start_atlas.sh
[2025-07-27 17:07:54] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 15:53 input.tar.gz
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas 209434652 Jul 27 17:06 HITS.pool.root.1
[2025-07-27 17:07:54] -rw-------. 1 boincer umatlas    819200 Jul 27 17:07 result.tar.gz
17:08:15 (1682337): run_atlas exited; CPU time 46846.304048
17:08:15 (1682337): called boinc_finish(0)

</stderr_txt>
]]>

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