Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:21:19 (9833): wrapper (7.7.26015): starting
14:21:19 (9833): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 14:21:19] Arguments: --nthreads 8
[2025-07-27 14:21:19] Threads: 8
[2025-07-27 14:21:19] Checking for CVMFS
[2025-07-27 14:21:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:21:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:21:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:21:20] 2.11.2.0 1598 105676 123096 148821 3 56 20187539 20275201 917 130560 0 74960780 99.986 8200039 9294 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 14:21:20] CVMFS is ok
[2025-07-27 14:21:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:21:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:21:20] Further information can be found at the LHC@home message board.
[2025-07-27 14:21:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:21:20] Checking for apptainer binary...
[2025-07-27 14:21:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:21:20] Running /usr/bin/apptainer --version
[2025-07-27 14:21:20] apptainer version 1.3.2-1.el7
[2025-07-27 14:21:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:21:20] c-205-36.aglt2.org
[2025-07-27 14:21:20] apptainer works
[2025-07-27 14:21:20] Set ATHENA_PROC_NUMBER=8
[2025-07-27 14:21:20] Set ATHENA_CORE_NUMBER=8
[2025-07-27 14:21:21] Starting ATLAS job with PandaID=6747411924
[2025-07-27 14:21:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:35:50]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:35:50] 2025-07-27 19:35:10,845 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747411924/log.45743349._049057.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049057.job
[2025-07-27 15:35:50] 2025-07-27 19:35:10,862 | INFO     | adding to output.list: log.45743349._049057.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/ca/log.45743349._049057.job.log.tg
[2025-07-27 15:35:50] 2025-07-27 19:35:10,863 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 15:35:50] 2025-07-27 19:35:10,863 | INFO     | summary of transferred files:
[2025-07-27 15:35:50] 2025-07-27 19:35:10,863 | INFO     |  -- lfn=log.45743349._049057.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 15:35:50] 2025-07-27 19:35:10,863 | INFO     | stage-out finished correctly
[2025-07-27 15:35:50] 2025-07-27 19:35:11,401 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 15:35:50] 2025-07-27 19:35:12,009 | WARNING  | process 19867 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 15:35:50] 2025-07-27 19:35:12,009 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411924/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,010 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411924/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,012 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3298737 B
[2025-07-27 15:35:50] 2025-07-27 19:35:12,012 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15544 B
[2025-07-27 15:35:50] 2025-07-27 19:35:12,012 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 15:35:50] 2025-07-27 19:35:12,029 | INFO     | sufficient remaining disk space (32669433856 B)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,029 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,030 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747411924: 3597116 B (within 2537553920 B limit)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,031 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747411924/HITS.45743349._049057.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,031 | INFO     | total size of present files: 0 B (workdir size: 3597116 B)
[2025-07-27 15:35:50] 2025-07-27 19:35:12,031 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747411924/HITS.45743349._049057.pool.root.1 since it does not exist
[2025-07-27 15:35:50] 2025-07-27 19:35:12,153 | INFO     | number of running child processes to parent process 19867: 1
[2025-07-27 15:35:50] 2025-07-27 19:35:12,153 | INFO     | maximum number of monitored processes: 6
[2025-07-27 15:35:50] 2025-07-27 19:35:13,245 | INFO     | job 6747411924 has state=finished
[2025-07-27 15:35:50] 2025-07-27 19:35:13,245 | INFO     | preparing for final server update for job 6747411924 in state='finished'
[2025-07-27 15:35:50] 2025-07-27 19:35:13,246 | INFO     | this job has now completed (state=finished)
[2025-07-27 15:35:50] 2025-07-27 19:35:13,246 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 15:35:50] 2025-07-27 19:35:13,246 | INFO     | log transfer has been attempted: DONE
[2025-07-27 15:35:50] 2025-07-27 19:35:13,247 | INFO     | job 6747411924 has finished - writing final server update
[2025-07-27 15:35:50] 2025-07-27 19:35:13,247 | INFO     | total number of processed events: 400 (read)
[2025-07-27 15:35:50] 2025-07-27 19:35:13,248 | INFO     | executing command: lscpu
[2025-07-27 15:35:50] 2025-07-27 19:35:13,280 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 15:35:50] 2025-07-27 19:35:14,656 | INFO     | monitor loop #333: job 0:6747411924 is in state 'finished'
[2025-07-27 15:35:50] 2025-07-27 19:35:14,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,159 | INFO     | monitor loop #334: job 0:6747411924 is in state 'finished'
[2025-07-27 15:35:50] 2025-07-27 19:35:17,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,819 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 15:35:50] 2025-07-27 19:35:17,823 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2081.0754375
[2025-07-27 15:35:50] 2025-07-27 19:35:17,827 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411924/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,828 | INFO     | extracted standard info from prmon json
[2025-07-27 15:35:50] 2025-07-27 19:35:17,828 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 15:35:50] 2025-07-27 19:35:17,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 15:35:50] 2025-07-27 19:35:17,828 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 15:35:50] 2025-07-27 19:35:17,828 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 15:35:50] 2025-07-27 19:35:17,830 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:35:50] 2025-07-27 19:35:17,831 | INFO     | sum of square deviations: 85136480.0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,831 | INFO     | sum of deviations: -7452685125.999998
[2025-07-27 15:35:50] 2025-07-27 19:35:17,831 | INFO     | mean x: 1753642776.0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,831 | INFO     | mean y: 2673439.030769231
[2025-07-27 15:35:50] 2025-07-27 19:35:17,832 | INFO     | -- intersect: 153513218307.8408
[2025-07-27 15:35:50] 2025-07-27 19:35:17,832 | INFO     | intersect: 153513218307.8408
[2025-07-27 15:35:50] 2025-07-27 19:35:17,832 | INFO     | chi2: 0.01632359212248511
[2025-07-27 15:35:50] 2025-07-27 19:35:17,832 | INFO     | -- intersect: 153513218307.8408
[2025-07-27 15:35:50] 2025-07-27 19:35:17,832 | INFO     | current memory leak: -87.54 B/s (using 65 data points, chi2=0.02)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,832 | INFO     | could have reported an average CPU frequency of 2148 MHz (6 samples)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | ..............................
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . Timing measurements:
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . get job = 0 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . initial setup = 2 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . payload setup = 7 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . stage-in = 0 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . payload execution = 4393 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,833 | INFO     | . stage-out = 0 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,834 | INFO     | . log creation = 0 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,834 | INFO     | ..............................
[2025-07-27 15:35:50] 2025-07-27 19:35:17,915 | INFO     | 
[2025-07-27 15:35:50] 2025-07-27 19:35:17,915 | INFO     | job summary report
[2025-07-27 15:35:50] 2025-07-27 19:35:17,915 | INFO     | --------------------------------------------------
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | PanDA job id: 6747411924
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | task id: 45743349
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | errors: (none)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | pilot state: finished 
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | transexitcode: 0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | exeerrorcode: 0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | exeerrordiag: 
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | exitcode: 0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,916 | INFO     | exitmsg: OK
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | cpuconsumptiontime: 32885 s
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | nevents: 400
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | neventsw: 0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | pid: 19867
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | pgrp: 19867
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | corecount: 8
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | event service: False
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 4401: 2423837, 4402: 2423836, 4404: 2433074, 4411: 2433240}
[2025-07-27 15:35:50] 2025-07-27 19:35:17,917 | INFO     | --------------------------------------------------
[2025-07-27 15:35:50] 2025-07-27 19:35:17,918 | INFO     | 
[2025-07-27 15:35:50] 2025-07-27 19:35:17,918 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 15:35:50] 2025-07-27 19:35:17,936 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,937 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:35:50] 2025-07-27 19:35:17,939 | INFO     | job 6747411924 has completed (purged errors)
[2025-07-27 15:35:50] 2025-07-27 19:35:17,939 | INFO     | overall cleanup function is called
[2025-07-27 15:35:50] 2025-07-27 19:35:18,946 | INFO     | --- collectZombieJob: --- 10, [19867]
[2025-07-27 15:35:50] 2025-07-27 19:35:18,946 | INFO     | zombie collector waiting for pid 19867
[2025-07-27 15:35:50] 2025-07-27 19:35:18,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:35:50] 2025-07-27 19:35:18,947 | INFO     | collected zombie processes
[2025-07-27 15:35:50] 2025-07-27 19:35:18,947 | INFO     | will attempt to kill all subprocesses of pid=19867
[2025-07-27 15:35:50] 2025-07-27 19:35:19,061 | INFO     | process IDs to be killed: [19867] (in reverse order)
[2025-07-27 15:35:50] 2025-07-27 19:35:19,103 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:35:50] 2025-07-27 19:35:19,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:35:50] 2025-07-27 19:35:19,108 | INFO     | did not find any defunct processes belonging to 19867
[2025-07-27 15:35:50] 2025-07-27 19:35:19,111 | INFO     | did not find any defunct processes belonging to 19867
[2025-07-27 15:35:50] 2025-07-27 19:35:19,111 | INFO     | ready for new job
[2025-07-27 15:35:50] 2025-07-27 19:35:19,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:35:50] 2025-07-27 19:35:19,113 | INFO     | ***************************************
[2025-07-27 15:35:50] 2025-07-27 19:35:19,113 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:35:50] 2025-07-27 19:35:19,113 | INFO     | ***************************************
[2025-07-27 15:35:50] 2025-07-27 19:35:19,113 | INFO     | 
[2025-07-27 15:35:50] 2025-07-27 19:35:19,115 | INFO     | architecture information:
[2025-07-27 15:35:50] 2025-07-27 19:35:19,115 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:35:50] 2025-07-27 19:35:19,129 | INFO     | cat /etc/os-release:
[2025-07-27 15:35:50] NAME="CentOS Linux"
[2025-07-27 15:35:50] VERSION="7 (Core)"
[2025-07-27 15:35:50] ID="centos"
[2025-07-27 15:35:50] ID_LIKE="rhel fedora"
[2025-07-27 15:35:50] VERSION_ID="7"
[2025-07-27 15:35:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:35:50] ANSI_COLOR="0;31"
[2025-07-27 15:35:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:35:50] HOME_URL="https://www.centos.org/"
[2025-07-27 15:35:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:35:50] 
[2025-07-27 15:35:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:35:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:35:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:35:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:35:50] 
[2025-07-27 15:35:50] 2025-07-27 19:35:19,129 | INFO     | ***************************************
[2025-07-27 15:35:50] 2025-07-27 19:35:19,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 15:35:50] 2025-07-27 19:35:19,649 | INFO     | sufficient remaining disk space (32673628160 B)
[2025-07-27 15:35:50] 2025-07-27 19:35:19,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:35:50] 2025-07-27 19:35:19,650 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:35:50] 2025-07-27 19:35:19,650 | INFO     | update_server=False
[2025-07-27 15:35:50] 2025-07-27 19:35:19,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:35:50] 2025-07-27 19:35:19,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:35:50] 2025-07-27 19:35:19,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:35:50] 2025-07-27 19:35:19,663 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 15:35:50] 2025-07-27 19:35:19,663 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 15:35:50] 2025-07-27 19:35:19,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:35:50] 2025-07-27 19:35:19,663 | INFO     | will abort loop
[2025-07-27 15:35:50] 2025-07-27 19:35:20,166 | INFO     | all payload control threads have been joined
[2025-07-27 15:35:50] 2025-07-27 19:35:20,604 | INFO     | all data control threads have been joined
[2025-07-27 15:35:50] 2025-07-27 19:35:20,654 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:20,655 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:20,669 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:20,718 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,086 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,093 | INFO     | all job control threads have been joined
[2025-07-27 15:35:50] 2025-07-27 19:35:21,171 | INFO     | [payload] control thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,219 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,609 | INFO     | [data] control thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,656 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,854 | INFO     | [job] validate thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,988 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:21,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:35:50] 2025-07-27 19:35:22,052 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:22,097 | INFO     | [job] control thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:22,113 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:25,996 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:29,839 | INFO     | job.realtimelogging is not enabled
[2025-07-27 15:35:50] 2025-07-27 19:35:30,844 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:35:50] 2025-07-27 19:35:32,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407656232768)>', '<ExcThread(monitor, started 140407220455168)>']
[2025-07-27 15:35:50] 2025-07-27 19:35:37,049 | INFO     | all workflow threads have been joined
[2025-07-27 15:35:50] 2025-07-27 19:35:37,049 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:35:50] 2025-07-27 19:35:37,050 | INFO     | traces error code: 0
[2025-07-27 15:35:50] 2025-07-27 19:35:37,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:35:50] 2025-07-27 19:35:50,100 | INFO     | PID=13458 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 15:35:50] 2025-07-27 19:35:50,100 | INFO     | .. there are 2 such processes running
[2025-07-27 15:35:50] 2025-07-27 19:35:50,101 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:35:50] 2025-07-27 19:35:50,101 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:35:50] 2025-07-27 19:35:50,101 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:35:50] 2025-07-27 19:35:50,101 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:35:50] 2025-07-27 19:35:50,101 | INFO     | [monitor] control thread has ended
[2025-07-27 15:35:50] 2025-07-27 19:35:50,200 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:35:50] 2025-07-27 19:35:50,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:35:50] 2025-07-27 19:35:50,206 [wrapper] pilotpid: 13458
[2025-07-27 15:35:50] 2025-07-27 19:35:50,210 [wrapper] Pilot exit status: 0
[2025-07-27 15:35:50] 2025-07-27 19:35:50,220 [wrapper] pandaids: 6747411924
[2025-07-27 15:35:50] 2025-07-27 19:35:50,251 [wrapper] cleanup supervisor_pilot 31210 13459
[2025-07-27 15:35:50] 2025-07-27 19:35:50,255 [wrapper] Test setup, not cleaning
[2025-07-27 15:35:50] 2025-07-27 19:35:50,258 [wrapper] apfmon messages muted
[2025-07-27 15:35:50] 2025-07-27 19:35:50,261 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:35:50] 2025-07-27 19:35:50,264 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:35:50]  *** Error codes and diagnostics ***
[2025-07-27 15:35:50]     "exeErrorCode": 0,
[2025-07-27 15:35:50]     "exeErrorDiag": "",
[2025-07-27 15:35:50]     "pilotErrorCode": 0,
[2025-07-27 15:35:50]     "pilotErrorDiag": "",
[2025-07-27 15:35:50]  *** Listing of results directory ***
[2025-07-27 15:35:50] total 429692
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 09:19 queuedata.json
[2025-07-27 15:35:50] -rwx------ 1 boincer umatlas     36292 Jul 27 09:19 runpilot2-wrapper.sh
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas       100 Jul 27 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:35:50] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 14:21 run_atlas
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas       105 Jul 27 14:21 job.xml
[2025-07-27 15:35:50] -rw-r--r-- 2 boincer umatlas    542894 Jul 27 14:21 input.tar.gz
[2025-07-27 15:35:50] -rw-r--r-- 2 boincer umatlas 230625652 Jul 27 14:21 EVNT.45743347._002713.pool.root.1
[2025-07-27 15:35:50] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 14:21 start_atlas.sh
[2025-07-27 15:35:50] drwxrwx--x 2 boincer umatlas      4096 Jul 27 14:21 shared
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas         0 Jul 27 14:21 boinc_lockfile
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas      2563 Jul 27 14:21 pandaJob.out
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas    980125 Jul 27 14:21 agis_schedconf.cvmfs.json
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas   1593052 Jul 27 14:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:35:50] drwx------ 4 boincer umatlas      4096 Jul 27 14:21 pilot3
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas      6048 Jul 27 15:29 init_data.xml
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas 204003177 Jul 27 15:34 HITS.45743349._049057.pool.root.1
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas       529 Jul 27 15:34 boinc_task_state.xml
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas      1047 Jul 27 15:35 memory_monitor_summary.json
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas    303937 Jul 27 15:35 log.45743349._049057.job.log.tgz.1
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas      7842 Jul 27 15:35 heartbeat.json
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 15:35 boinc_mmap_file
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas        27 Jul 27 15:35 wrapper_checkpoint.txt
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas        95 Jul 27 15:35 pilot_heartbeat.json
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas       820 Jul 27 15:35 pilotlog.txt
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas    444292 Jul 27 15:35 log.45743349._049057.job.log.1
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas       357 Jul 27 15:35 output.list
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas       620 Jul 27 15:35 runtime_log
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas    768000 Jul 27 15:35 result.tar.gz
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas      8660 Jul 27 15:35 runtime_log.err
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas       658 Jul 27 15:35 cfJMDmMTG07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvMVLDmnYPMyn.diag
[2025-07-27 15:35:50] -rw-r--r-- 1 boincer umatlas     22592 Jul 27 15:35 stderr.txt
[2025-07-27 15:35:50] HITS file was successfully produced:
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas 204003177 Jul 27 15:34 shared/HITS.pool.root.1
[2025-07-27 15:35:50]  *** Contents of shared directory: ***
[2025-07-27 15:35:50] total 425752
[2025-07-27 15:35:50] -rw-r--r-- 2 boincer umatlas    542894 Jul 27 14:21 input.tar.gz
[2025-07-27 15:35:50] -rw-r--r-- 2 boincer umatlas 230625652 Jul 27 14:21 ATLAS.root_0
[2025-07-27 15:35:50] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 14:21 start_atlas.sh
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas 204003177 Jul 27 15:34 HITS.pool.root.1
[2025-07-27 15:35:50] -rw------- 1 boincer umatlas    768000 Jul 27 15:35 result.tar.gz
15:35:52 (9833): run_atlas exited; CPU time 32880.900761
15:35:52 (9833): called boinc_finish(0)

</stderr_txt>
]]>

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