Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:47 (425682): wrapper (7.7.26015): starting
16:14:47 (425682): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:14:47] Arguments: --nthreads 12
[2025-07-27 16:14:47] Threads: 12
[2025-07-27 16:14:47] Checking for CVMFS
[2025-07-27 16:14:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:14:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:14:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:14:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:14:47] 2.12.6.0 999403 18831 269636 148823 3 14 27877026 32935936 10125 16776704 0 45812273 99.526 67787835 31366 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 16:14:47] CVMFS is ok
[2025-07-27 16:14:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 16:14:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 16:14:47] Further information can be found at the LHC@home message board.
[2025-07-27 16:14:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:14:47] Checking for apptainer binary...
[2025-07-27 16:14:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 16:14:47] Running /usr/bin/apptainer --version
[2025-07-27 16:14:47] apptainer version 1.4.1-1.el9
[2025-07-27 16:14:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:14:47] c6-2-29-4.aglt2.org
[2025-07-27 16:14:47] apptainer works
[2025-07-27 16:14:47] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:14:47] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:14:47] Starting ATLAS job with PandaID=6747524932
[2025-07-27 16:14:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:55:51]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:55:51]  replicas=None
[2025-07-27 17:55:51]  scope=mc23_13p6TeV
[2025-07-27 17:55:51]  status=None
[2025-07-27 17:55:51]  status_code=0
[2025-07-27 17:55:51]  storage_token=
[2025-07-27 17:55:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747524932/log.45743349._051845.job.log.tgz.1
[2025-07-27 17:55:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/82/log.45743349._051845.job.log.tgz.1
[2025-07-27 17:55:51]  workdir=None
[2025-07-27 17:55:51] ]
[2025-07-27 17:55:51] 2025-07-27 21:55:08,546 | INFO     | transferring file log.45743349._051845.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747524932/log.45743349._051845.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 17:55:51] 2025-07-27 21:55:08,546 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747524932/log.45743349._051845.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._051845.job
[2025-07-27 17:55:51] 2025-07-27 21:55:08,569 | INFO     | adding to output.list: log.45743349._051845.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/82/log.45743349._051845.job.log.tg
[2025-07-27 17:55:51] 2025-07-27 21:55:08,570 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:55:51] 2025-07-27 21:55:08,570 | INFO     | summary of transferred files:
[2025-07-27 17:55:51] 2025-07-27 21:55:08,570 | INFO     |  -- lfn=log.45743349._051845.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:55:51] 2025-07-27 21:55:08,570 | INFO     | stage-out finished correctly
[2025-07-27 17:55:51] 2025-07-27 21:55:10,825 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:55:51] 2025-07-27 21:55:13,324 | INFO     | job 6747524932 has state=finished
[2025-07-27 17:55:51] 2025-07-27 21:55:13,325 | INFO     | preparing for final server update for job 6747524932 in state='finished'
[2025-07-27 17:55:51] 2025-07-27 21:55:13,326 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:55:51] 2025-07-27 21:55:13,326 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:55:51] 2025-07-27 21:55:13,326 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:55:51] 2025-07-27 21:55:13,326 | INFO     | job 6747524932 has finished - writing final server update
[2025-07-27 17:55:51] 2025-07-27 21:55:13,327 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:55:51] 2025-07-27 21:55:13,328 | INFO     | executing command: lscpu
[2025-07-27 17:55:51] 2025-07-27 21:55:13,393 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:55:51] 2025-07-27 21:55:13,961 | WARNING  | process 436789 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:55:51] 2025-07-27 21:55:13,962 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747524932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:55:51] 2025-07-27 21:55:13,963 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747524932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:55:51] 2025-07-27 21:55:14,631 | INFO     | number of running child processes to parent process 436789: 1
[2025-07-27 17:55:51] 2025-07-27 21:55:14,631 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:55:51] 2025-07-27 21:55:14,664 | INFO     | PID=429287 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 17:55:51] 2025-07-27 21:55:14,665 | INFO     | .. there are 11 such processes running
[2025-07-27 17:55:51] 2025-07-27 21:55:17,135 | INFO     | monitor loop #419: job 0:6747524932 is in state 'finished'
[2025-07-27 17:55:51] 2025-07-27 21:55:17,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,093 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 17:55:51] 2025-07-27 21:55:19,101 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2830.4261249999995
[2025-07-27 17:55:51] 2025-07-27 21:55:19,111 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747524932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,111 | INFO     | extracted standard info from prmon json
[2025-07-27 17:55:51] 2025-07-27 21:55:19,112 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:55:51] 2025-07-27 21:55:19,112 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:55:51] 2025-07-27 21:55:19,112 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:55:51] 2025-07-27 21:55:19,112 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:55:51] 2025-07-27 21:55:19,114 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:55:51] 2025-07-27 21:55:19,115 | INFO     | sum of square deviations: 233632693.29670343
[2025-07-27 17:55:51] 2025-07-27 21:55:19,115 | INFO     | sum of deviations: -22890567062.63737
[2025-07-27 17:55:51] 2025-07-27 21:55:19,115 | INFO     | mean x: 1753650385.087912
[2025-07-27 17:55:51] 2025-07-27 21:55:19,115 | INFO     | mean y: 2601371.3296703296
[2025-07-27 17:55:51] 2025-07-27 21:55:19,115 | INFO     | -- intersect: 171819529806.49533
[2025-07-27 17:55:51] 2025-07-27 21:55:19,115 | INFO     | intersect: 171819529806.49533
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | chi2: 0.28748262250020806
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | -- intersect: 171819529806.49533
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | current memory leak: -97.98 B/s (using 91 data points, chi2=0.29)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | could have reported an average CPU frequency of 2769 MHz (7 samples)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | ..............................
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | . Timing measurements:
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | . get job = 0 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,116 | INFO     | . initial setup = 3 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,117 | INFO     | . payload setup = 9 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,117 | INFO     | . stage-in = 0 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,117 | INFO     | . payload execution = 5975 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,117 | INFO     | . stage-out = 0 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,117 | INFO     | . log creation = 0 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,117 | INFO     | ..............................
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | 
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | job summary report
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | --------------------------------------------------
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | PanDA job id: 6747524932
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | task id: 45743349
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | errors: (none)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,305 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | pilot state: finished 
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | transexitcode: 0
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | exeerrorcode: 0
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | exeerrordiag: 
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | exitcode: 0
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | exitmsg: OK
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | cpuconsumptiontime: 48556 s
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | nevents: 400
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | neventsw: 0
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | pid: 436789
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | pgrp: 436789
[2025-07-27 17:55:51] 2025-07-27 21:55:19,306 | INFO     | corecount: 12
[2025-07-27 17:55:51] 2025-07-27 21:55:19,307 | INFO     | event service: False
[2025-07-27 17:55:51] 2025-07-27 21:55:19,307 | INFO     | sizes: {0: 2397475, 1: 2397503, 6: 2397765, 11: 2397793, 5988: 2424522, 5990: 2433520, 5992: 2433704, 6000: 2433898}
[2025-07-27 17:55:51] 2025-07-27 21:55:19,307 | INFO     | --------------------------------------------------
[2025-07-27 17:55:51] 2025-07-27 21:55:19,307 | INFO     | 
[2025-07-27 17:55:51] 2025-07-27 21:55:19,307 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 17:55:51] 2025-07-27 21:55:19,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,333 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,334 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:55:51] 2025-07-27 21:55:19,335 | INFO     | job 6747524932 has completed (purged errors)
[2025-07-27 17:55:51] 2025-07-27 21:55:19,335 | INFO     | overall cleanup function is called
[2025-07-27 17:55:51] 2025-07-27 21:55:20,343 | INFO     | --- collectZombieJob: --- 10, [436789]
[2025-07-27 17:55:51] 2025-07-27 21:55:20,343 | INFO     | zombie collector waiting for pid 436789
[2025-07-27 17:55:51] 2025-07-27 21:55:20,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:55:51] 2025-07-27 21:55:20,344 | INFO     | collected zombie processes
[2025-07-27 17:55:51] 2025-07-27 21:55:20,344 | INFO     | will attempt to kill all subprocesses of pid=436789
[2025-07-27 17:55:51] 2025-07-27 21:55:20,627 | INFO     | process IDs to be killed: [436789] (in reverse order)
[2025-07-27 17:55:51] 2025-07-27 21:55:20,736 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:55:51] 2025-07-27 21:55:20,736 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:55:51] 2025-07-27 21:55:20,748 | INFO     | did not find any defunct processes belonging to 436789
[2025-07-27 17:55:51] 2025-07-27 21:55:20,759 | INFO     | did not find any defunct processes belonging to 436789
[2025-07-27 17:55:51] 2025-07-27 21:55:20,760 | INFO     | ready for new job
[2025-07-27 17:55:51] 2025-07-27 21:55:20,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:55:51] 2025-07-27 21:55:20,762 | INFO     | ***************************************
[2025-07-27 17:55:51] 2025-07-27 21:55:20,763 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:55:51] 2025-07-27 21:55:20,763 | INFO     | ***************************************
[2025-07-27 17:55:51] 2025-07-27 21:55:20,763 | INFO     | 
[2025-07-27 17:55:51] 2025-07-27 21:55:20,766 | INFO     | architecture information:
[2025-07-27 17:55:51] 2025-07-27 21:55:20,767 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:55:51] 2025-07-27 21:55:20,787 | INFO     | cat /etc/os-release:
[2025-07-27 17:55:51] NAME="CentOS Linux"
[2025-07-27 17:55:51] VERSION="7 (Core)"
[2025-07-27 17:55:51] ID="centos"
[2025-07-27 17:55:51] ID_LIKE="rhel fedora"
[2025-07-27 17:55:51] VERSION_ID="7"
[2025-07-27 17:55:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:55:51] ANSI_COLOR="0;31"
[2025-07-27 17:55:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:55:51] HOME_URL="https://www.centos.org/"
[2025-07-27 17:55:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:55:51] 
[2025-07-27 17:55:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:55:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:55:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:55:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:55:51] 
[2025-07-27 17:55:51] 2025-07-27 21:55:20,788 | INFO     | ***************************************
[2025-07-27 17:55:51] 2025-07-27 21:55:21,291 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 17:55:51] 2025-07-27 21:55:21,310 | INFO     | sufficient remaining disk space (76456919040 B)
[2025-07-27 17:55:51] 2025-07-27 21:55:21,311 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:55:51] 2025-07-27 21:55:21,311 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:55:51] 2025-07-27 21:55:21,311 | INFO     | update_server=False
[2025-07-27 17:55:51] 2025-07-27 21:55:21,311 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:55:51] 2025-07-27 21:55:21,311 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:55:51] 2025-07-27 21:55:21,311 | INFO     | aborting loop
[2025-07-27 17:55:51] 2025-07-27 21:55:21,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:55:51] 2025-07-27 21:55:21,465 | INFO     | all payload control threads have been joined
[2025-07-27 17:55:51] 2025-07-27 21:55:21,527 | INFO     | all data control threads have been joined
[2025-07-27 17:55:51] 2025-07-27 21:55:21,681 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:55:51] 2025-07-27 21:55:22,316 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,317 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,470 | INFO     | [payload] control thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,532 | INFO     | [data] control thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,534 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,554 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,661 | INFO     | all job control threads have been joined
[2025-07-27 17:55:51] 2025-07-27 21:55:22,865 | INFO     | [job] validate thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,945 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:22,946 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:23,061 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:23,274 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:23,666 | INFO     | [job] control thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:23,688 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:24,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:55:51] 2025-07-27 21:55:25,220 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:25,464 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:31,689 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:55:51] 2025-07-27 21:55:32,695 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:55:51] 2025-07-27 21:55:34,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140485667329856)>', '<ExcThread(monitor, started 140484798301952)>']
[2025-07-27 17:55:51] 2025-07-27 21:55:39,350 | INFO     | all workflow threads have been joined
[2025-07-27 17:55:51] 2025-07-27 21:55:39,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:55:51] 2025-07-27 21:55:39,352 | INFO     | traces error code: 0
[2025-07-27 17:55:51] 2025-07-27 21:55:39,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:55:51] 2025-07-27 21:55:51,112 | INFO     | PID=429287 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:55:51] 2025-07-27 21:55:51,113 | INFO     | .. there are 11 such processes running
[2025-07-27 17:55:51] 2025-07-27 21:55:51,113 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:55:51] 2025-07-27 21:55:51,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:55:51] 2025-07-27 21:55:51,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:55:51] 2025-07-27 21:55:51,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:55:51] 2025-07-27 21:55:51,113 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 17:55:51] 2025-07-27 21:55:51,114 | INFO     | [monitor] control thread has ended
[2025-07-27 17:55:51] 2025-07-27 21:55:51,276 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:55:51] 2025-07-27 21:55:51,281 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:55:51] 2025-07-27 21:55:51,287 [wrapper] pilotpid: 429287
[2025-07-27 17:55:51] 2025-07-27 21:55:51,292 [wrapper] Pilot exit status: 0
[2025-07-27 17:55:51] 2025-07-27 21:55:51,310 [wrapper] pandaids: 6747524932
[2025-07-27 17:55:51] 2025-07-27 21:55:51,385 [wrapper] cleanup supervisor_pilot  748431 429288
[2025-07-27 17:55:51] 2025-07-27 21:55:51,389 [wrapper] Test setup, not cleaning
[2025-07-27 17:55:51] 2025-07-27 21:55:51,394 [wrapper] apfmon messages muted
[2025-07-27 17:55:51] 2025-07-27 21:55:51,398 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:55:51] 2025-07-27 21:55:51,403 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:55:51]  *** Error codes and diagnostics ***
[2025-07-27 17:55:51]     "exeErrorCode": 0,
[2025-07-27 17:55:51]     "exeErrorDiag": "",
[2025-07-27 17:55:51]     "pilotErrorCode": 0,
[2025-07-27 17:55:51]     "pilotErrorDiag": "",
[2025-07-27 17:55:51]  *** Listing of results directory ***
[2025-07-27 17:55:51] total 392992
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 11:40 queuedata.json
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 11:40 pilot3.tar.gz
[2025-07-27 17:55:51] -rwx------. 1 boincer umatlas     36292 Jul 27 11:41 runpilot2-wrapper.sh
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas       100 Jul 27 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:55:51] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 16:14 run_atlas
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas       105 Jul 27 16:14 job.xml
[2025-07-27 17:55:51] -rw-r--r--. 2 boincer umatlas 189921136 Jul 27 16:14 EVNT.45743347._002831.pool.root.1
[2025-07-27 17:55:51] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 16:14 shared
[2025-07-27 17:55:51] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 16:14 input.tar.gz
[2025-07-27 17:55:51] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:14 start_atlas.sh
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas         0 Jul 27 16:14 boinc_lockfile
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 16:14 pandaJob.out
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas    980109 Jul 27 16:14 agis_schedconf.cvmfs.json
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas   1593052 Jul 27 16:15 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:55:51] drwx------. 4 boincer umatlas      4096 Jul 27 16:15 pilot3
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas 206744451 Jul 27 17:54 HITS.45743349._051845.pool.root.1
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas       529 Jul 27 17:54 boinc_task_state.xml
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 17:54 init_data.xml
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas        95 Jul 27 17:54 pilot_heartbeat.json
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas      1037 Jul 27 17:55 memory_monitor_summary.json
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas    380740 Jul 27 17:55 log.45743349._051845.job.log.tgz.1
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas      7819 Jul 27 17:55 heartbeat.json
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas        27 Jul 27 17:55 wrapper_checkpoint.txt
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas       892 Jul 27 17:55 pilotlog.txt
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 17:55 boinc_mmap_file
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas    564652 Jul 27 17:55 log.45743349._051845.job.log.1
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas       357 Jul 27 17:55 output.list
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas       620 Jul 27 17:55 runtime_log
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas    962560 Jul 27 17:55 result.tar.gz
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 17:55 runtime_log.err
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas       654 Jul 27 17:55 NX8MDmegI07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpkVLDmlluGRo.diag
[2025-07-27 17:55:51] -rw-r--r--. 1 boincer umatlas     21975 Jul 27 17:55 stderr.txt
[2025-07-27 17:55:51] HITS file was successfully produced:
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas 206744451 Jul 27 17:54 shared/HITS.pool.root.1
[2025-07-27 17:55:51]  *** Contents of shared directory: ***
[2025-07-27 17:55:51] total 388864
[2025-07-27 17:55:51] -rw-r--r--. 2 boincer umatlas 189921136 Jul 27 16:14 ATLAS.root_0
[2025-07-27 17:55:51] -rw-r--r--. 2 boincer umatlas    542891 Jul 27 16:14 input.tar.gz
[2025-07-27 17:55:51] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 16:14 start_atlas.sh
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas 206744451 Jul 27 17:54 HITS.pool.root.1
[2025-07-27 17:55:51] -rw-------. 1 boincer umatlas    962560 Jul 27 17:55 result.tar.gz
17:55:53 (425682): run_atlas exited; CPU time 48632.724572
17:55:53 (425682): called boinc_finish(0)

</stderr_txt>
]]>

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