Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:13:41 (439897): wrapper (7.7.26015): starting
14:13:41 (439897): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 14:13:41] Arguments: --nthreads 10
[2025-07-27 14:13:41] Threads: 10
[2025-07-27 14:13:41] Checking for CVMFS
[2025-07-27 14:13:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:13:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:13:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:13:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:13:41] 2.13.1.0 158023 7032 156356 148820 0 104 36528214 39288833 4764 16776704 0 6597498 99.627 8878209 39447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 14:13:41] CVMFS is ok
[2025-07-27 14:13:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:13:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:13:41] Further information can be found at the LHC@home message board.
[2025-07-27 14:13:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:13:41] Checking for apptainer binary...
[2025-07-27 14:13:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:13:41] Running /usr/bin/apptainer --version
[2025-07-27 14:13:41] apptainer version 1.4.1-1.el9
[2025-07-27 14:13:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:13:41] c-210-6.aglt2.org
[2025-07-27 14:13:41] apptainer works
[2025-07-27 14:13:41] Set ATHENA_PROC_NUMBER=10
[2025-07-27 14:13:41] Set ATHENA_CORE_NUMBER=10
[2025-07-27 14:13:41] Starting ATLAS job with PandaID=6747110141
[2025-07-27 14:13:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:51:08]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:51:08]  lfn=log.45743349._046595.job.log.tgz.1
[2025-07-27 15:51:08]  mtime=0
[2025-07-27 15:51:08]  protocol_id=None
[2025-07-27 15:51:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 15:51:08]  replicas=None
[2025-07-27 15:51:08]  scope=mc23_13p6TeV
[2025-07-27 15:51:08]  status=None
[2025-07-27 15:51:08]  status_code=0
[2025-07-27 15:51:08]  storage_token=
[2025-07-27 15:51:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747110141/log.45743349._046595.job.log.tgz.1
[2025-07-27 15:51:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/93/log.45743349._046595.job.log.tgz.1
[2025-07-27 15:51:08]  workdir=None
[2025-07-27 15:51:08] ]
[2025-07-27 15:51:08] 2025-07-27 19:50:31,353 | INFO     | transferring file log.45743349._046595.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747110141/log.45743349._046595.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 15:51:08] 2025-07-27 19:50:31,354 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747110141/log.45743349._046595.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._046595.job
[2025-07-27 15:51:08] 2025-07-27 19:50:31,372 | INFO     | adding to output.list: log.45743349._046595.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/93/log.45743349._046595.job.log.tg
[2025-07-27 15:51:08] 2025-07-27 19:50:31,373 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 15:51:08] 2025-07-27 19:50:31,373 | INFO     | summary of transferred files:
[2025-07-27 15:51:08] 2025-07-27 19:50:31,373 | INFO     |  -- lfn=log.45743349._046595.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 15:51:08] 2025-07-27 19:50:31,373 | INFO     | stage-out finished correctly
[2025-07-27 15:51:08] 2025-07-27 19:50:31,450 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 15:51:08] 2025-07-27 19:50:32,222 | INFO     | job 6747110141 has state=finished
[2025-07-27 15:51:08] 2025-07-27 19:50:32,222 | INFO     | preparing for final server update for job 6747110141 in state='finished'
[2025-07-27 15:51:08] 2025-07-27 19:50:32,223 | INFO     | this job has now completed (state=finished)
[2025-07-27 15:51:08] 2025-07-27 19:50:32,223 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 15:51:08] 2025-07-27 19:50:32,223 | INFO     | log transfer has been attempted: DONE
[2025-07-27 15:51:08] 2025-07-27 19:50:32,223 | INFO     | job 6747110141 has finished - writing final server update
[2025-07-27 15:51:08] 2025-07-27 19:50:32,223 | INFO     | total number of processed events: 400 (read)
[2025-07-27 15:51:08] 2025-07-27 19:50:32,224 | INFO     | executing command: lscpu
[2025-07-27 15:51:08] 2025-07-27 19:50:32,268 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 15:51:08] 2025-07-27 19:50:32,308 | INFO     | monitor loop #432: job 0:6747110141 is in state 'finished'
[2025-07-27 15:51:08] 2025-07-27 19:50:32,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:51:08] 2025-07-27 19:50:34,232 | INFO     | PID=443491 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 15:51:08] 2025-07-27 19:50:34,232 | INFO     | .. there are 6 such processes running
[2025-07-27 15:51:08] 2025-07-27 19:50:34,811 | INFO     | monitor loop #433: job 0:6747110141 is in state 'finished'
[2025-07-27 15:51:08] 2025-07-27 19:50:34,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,019 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 15:51:08] 2025-07-27 19:50:36,024 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.15875
[2025-07-27 15:51:08] 2025-07-27 19:50:36,028 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747110141/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,028 | INFO     | extracted standard info from prmon json
[2025-07-27 15:51:08] 2025-07-27 19:50:36,029 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 15:51:08] 2025-07-27 19:50:36,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 15:51:08] 2025-07-27 19:50:36,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 15:51:08] 2025-07-27 19:50:36,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | sum of square deviations: 211285822.0
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | sum of deviations: -21424592385.999996
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | mean x: 1753643020.5
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | mean y: 2912783.5454545454
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | -- intersect: 177824058325.27676
[2025-07-27 15:51:08] 2025-07-27 19:50:36,031 | INFO     | intersect: 177824058325.27676
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | chi2: 0.13835662143703994
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | -- intersect: 177824058325.27676
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | current memory leak: -101.40 B/s (using 88 data points, chi2=0.14)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | could have reported an average CPU frequency of 2600 MHz (7 samples)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | ..............................
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | . Timing measurements:
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | . get job = 0 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,032 | INFO     | . initial setup = 2 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,033 | INFO     | . payload setup = 7 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,033 | INFO     | . stage-in = 0 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,033 | INFO     | . payload execution = 5770 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,033 | INFO     | . stage-out = 0 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,033 | INFO     | . log creation = 0 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,033 | INFO     | ..............................
[2025-07-27 15:51:08] 2025-07-27 19:50:36,298 | INFO     | 
[2025-07-27 15:51:08] 2025-07-27 19:50:36,298 | INFO     | job summary report
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | --------------------------------------------------
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | PanDA job id: 6747110141
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | task id: 45743349
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | errors: (none)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | pilot state: finished 
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | transexitcode: 0
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | exeerrorcode: 0
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | exeerrordiag: 
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | exitcode: 0
[2025-07-27 15:51:08] 2025-07-27 19:50:36,299 | INFO     | exitmsg: OK
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | cpuconsumptiontime: 53766 s
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | nevents: 400
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | neventsw: 0
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | pid: 451414
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | pgrp: 451414
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | corecount: 10
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | event service: False
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | sizes: {0: 2397423, 4: 2397685, 11: 2397713, 5781: 2424329, 5782: 2433383, 5787: 2433521}
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | --------------------------------------------------
[2025-07-27 15:51:08] 2025-07-27 19:50:36,300 | INFO     | 
[2025-07-27 15:51:08] 2025-07-27 19:50:36,301 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 15:51:08] 2025-07-27 19:50:36,321 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,321 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,321 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,324 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:51:08] 2025-07-27 19:50:36,324 | INFO     | job 6747110141 has completed (purged errors)
[2025-07-27 15:51:08] 2025-07-27 19:50:36,324 | INFO     | overall cleanup function is called
[2025-07-27 15:51:08] 2025-07-27 19:50:37,332 | INFO     | --- collectZombieJob: --- 10, [451414]
[2025-07-27 15:51:08] 2025-07-27 19:50:37,332 | INFO     | zombie collector waiting for pid 451414
[2025-07-27 15:51:08] 2025-07-27 19:50:37,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:51:08] 2025-07-27 19:50:37,333 | INFO     | collected zombie processes
[2025-07-27 15:51:08] 2025-07-27 19:50:37,333 | INFO     | will attempt to kill all subprocesses of pid=451414
[2025-07-27 15:51:08] 2025-07-27 19:50:37,525 | INFO     | process IDs to be killed: [451414] (in reverse order)
[2025-07-27 15:51:08] 2025-07-27 19:50:37,592 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:51:08] 2025-07-27 19:50:37,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:51:08] 2025-07-27 19:50:37,602 | INFO     | did not find any defunct processes belonging to 451414
[2025-07-27 15:51:08] 2025-07-27 19:50:37,611 | INFO     | did not find any defunct processes belonging to 451414
[2025-07-27 15:51:08] 2025-07-27 19:50:37,612 | INFO     | ready for new job
[2025-07-27 15:51:08] 2025-07-27 19:50:37,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:51:08] 2025-07-27 19:50:37,613 | INFO     | ***************************************
[2025-07-27 15:51:08] 2025-07-27 19:50:37,614 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:51:08] 2025-07-27 19:50:37,614 | INFO     | ***************************************
[2025-07-27 15:51:08] 2025-07-27 19:50:37,614 | INFO     | 
[2025-07-27 15:51:08] 2025-07-27 19:50:37,615 | INFO     | architecture information:
[2025-07-27 15:51:08] 2025-07-27 19:50:37,615 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:51:08] 2025-07-27 19:50:37,631 | INFO     | cat /etc/os-release:
[2025-07-27 15:51:08] NAME="CentOS Linux"
[2025-07-27 15:51:08] VERSION="7 (Core)"
[2025-07-27 15:51:08] ID="centos"
[2025-07-27 15:51:08] ID_LIKE="rhel fedora"
[2025-07-27 15:51:08] VERSION_ID="7"
[2025-07-27 15:51:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:51:08] ANSI_COLOR="0;31"
[2025-07-27 15:51:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:51:08] HOME_URL="https://www.centos.org/"
[2025-07-27 15:51:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:51:08] 
[2025-07-27 15:51:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:51:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:51:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:51:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:51:08] 
[2025-07-27 15:51:08] 2025-07-27 19:50:37,631 | INFO     | ***************************************
[2025-07-27 15:51:08] 2025-07-27 19:50:38,133 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 15:51:08] 2025-07-27 19:50:38,151 | INFO     | sufficient remaining disk space (53999566848 B)
[2025-07-27 15:51:08] 2025-07-27 19:50:38,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:51:08] 2025-07-27 19:50:38,152 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:51:08] 2025-07-27 19:50:38,152 | INFO     | update_server=False
[2025-07-27 15:51:08] 2025-07-27 19:50:38,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:51:08] 2025-07-27 19:50:38,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:51:08] 2025-07-27 19:50:38,232 | INFO     | all data control threads have been joined
[2025-07-27 15:51:08] 2025-07-27 19:50:38,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:51:08] 2025-07-27 19:50:38,319 | INFO     | aborting loop
[2025-07-27 15:51:08] 2025-07-27 19:50:38,552 | INFO     | all job control threads have been joined
[2025-07-27 15:51:08] 2025-07-27 19:50:38,817 | INFO     | all payload control threads have been joined
[2025-07-27 15:51:08] 2025-07-27 19:50:39,157 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,237 | INFO     | [data] control thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,288 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,315 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,324 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,393 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:51:08] 2025-07-27 19:50:39,557 | INFO     | [job] control thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,575 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,822 | INFO     | [payload] control thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:39,946 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:40,443 | INFO     | [job] validate thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:40,488 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:41,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:51:08] 2025-07-27 19:50:41,463 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:42,129 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:42,157 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:48,585 | INFO     | job.realtimelogging is not enabled
[2025-07-27 15:51:08] 2025-07-27 19:50:49,590 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:51:08] 2025-07-27 19:50:50,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221928298304)>', '<ExcThread(monitor, started 140221203076864)>']
[2025-07-27 15:51:08] 2025-07-27 19:50:55,038 | INFO     | all workflow threads have been joined
[2025-07-27 15:51:08] 2025-07-27 19:50:55,038 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:51:08] 2025-07-27 19:50:55,039 | INFO     | traces error code: 0
[2025-07-27 15:51:08] 2025-07-27 19:50:55,039 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:51:08] 2025-07-27 19:51:08,534 | INFO     | PID=443491 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 15:51:08] 2025-07-27 19:51:08,534 | INFO     | .. there are 6 such processes running
[2025-07-27 15:51:08] 2025-07-27 19:51:08,534 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:51:08] 2025-07-27 19:51:08,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:51:08] 2025-07-27 19:51:08,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:51:08] 2025-07-27 19:51:08,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:51:08] 2025-07-27 19:51:08,535 | INFO     | [monitor] control thread has ended
[2025-07-27 15:51:08] 2025-07-27 19:51:08,682 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:51:08] 2025-07-27 19:51:08,685 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:51:08] 2025-07-27 19:51:08,688 [wrapper] pilotpid: 443491
[2025-07-27 15:51:08] 2025-07-27 19:51:08,691 [wrapper] Pilot exit status: 0
[2025-07-27 15:51:08] 2025-07-27 19:51:08,703 [wrapper] pandaids: 6747110141
[2025-07-27 15:51:08] 2025-07-27 19:51:08,751 [wrapper] cleanup supervisor_pilot  563909 443492
[2025-07-27 15:51:08] 2025-07-27 19:51:08,754 [wrapper] Test setup, not cleaning
[2025-07-27 15:51:08] 2025-07-27 19:51:08,757 [wrapper] apfmon messages muted
[2025-07-27 15:51:08] 2025-07-27 19:51:08,759 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:51:08] 2025-07-27 19:51:08,763 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:51:08]  *** Error codes and diagnostics ***
[2025-07-27 15:51:08]     "exeErrorCode": 0,
[2025-07-27 15:51:08]     "exeErrorDiag": "",
[2025-07-27 15:51:08]     "pilotErrorCode": 0,
[2025-07-27 15:51:08]     "pilotErrorDiag": "",
[2025-07-27 15:51:08]  *** Listing of results directory ***
[2025-07-27 15:51:08] total 351844
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 05:06 pilot3.tar.gz
[2025-07-27 15:51:08] -rwx------. 1 boincer umatlas     36292 Jul 27 05:40 runpilot2-wrapper.sh
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:40 queuedata.json
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas       100 Jul 27 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:51:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 14:13 run_atlas
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas       105 Jul 27 14:13 job.xml
[2025-07-27 15:51:08] -rw-r--r--. 2 boincer umatlas 143447392 Jul 27 14:13 EVNT.45743347._001003.pool.root.1
[2025-07-27 15:51:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:13 start_atlas.sh
[2025-07-27 15:51:08] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 14:13 shared
[2025-07-27 15:51:08] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 14:13 input.tar.gz
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas         0 Jul 27 14:13 boinc_lockfile
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 14:13 pandaJob.out
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas    980125 Jul 27 14:13 agis_schedconf.cvmfs.json
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas   1593052 Jul 27 14:13 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:51:08] drwx------. 4 boincer umatlas      4096 Jul 27 14:13 pilot3
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas      6657 Jul 27 15:45 init_data.xml
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas 211159490 Jul 27 15:49 HITS.45743349._046595.pool.root.1
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas       530 Jul 27 15:50 boinc_task_state.xml
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas      1039 Jul 27 15:50 memory_monitor_summary.json
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas    342370 Jul 27 15:50 log.45743349._046595.job.log.tgz.1
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas        95 Jul 27 15:50 pilot_heartbeat.json
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas      7822 Jul 27 15:50 heartbeat.json
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 15:51 boinc_mmap_file
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas        27 Jul 27 15:51 wrapper_checkpoint.txt
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas       821 Jul 27 15:51 pilotlog.txt
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas    564595 Jul 27 15:51 log.45743349._046595.job.log.1
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas       357 Jul 27 15:51 output.list
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas       620 Jul 27 15:51 runtime_log
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas    921600 Jul 27 15:51 result.tar.gz
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas      8657 Jul 27 15:51 runtime_log.err
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas       652 Jul 27 15:51 imsKDmH3C07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcwULDmTKfH4m.diag
[2025-07-27 15:51:08] -rw-r--r--. 1 boincer umatlas     21692 Jul 27 15:51 stderr.txt
[2025-07-27 15:51:08] HITS file was successfully produced:
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas 211159490 Jul 27 15:49 shared/HITS.pool.root.1
[2025-07-27 15:51:08]  *** Contents of shared directory: ***
[2025-07-27 15:51:08] total 347752
[2025-07-27 15:51:08] -rw-r--r--. 2 boincer umatlas 143447392 Jul 27 14:13 ATLAS.root_0
[2025-07-27 15:51:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:13 start_atlas.sh
[2025-07-27 15:51:08] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 14:13 input.tar.gz
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas 211159490 Jul 27 15:49 HITS.pool.root.1
[2025-07-27 15:51:08] -rw-------. 1 boincer umatlas    921600 Jul 27 15:51 result.tar.gz
15:51:10 (439897): run_atlas exited; CPU time 53873.770036
15:51:10 (439897): called boinc_finish(0)

</stderr_txt>
]]>

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