Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:06:34 (1646): wrapper (7.7.26015): starting
09:06:34 (1646): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 09:06:35] Arguments: --nthreads 8
[2025-07-28 09:06:35] Threads: 8
[2025-07-28 09:06:35] Checking for CVMFS
[2025-07-28 09:06:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 09:06:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 09:06:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 09:06:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 09:06:35] 2.11.2.0 20015 110656 137920 148839 0 157 23916805 25165824 4055 130560 0 81549580 99.868 47587644 2942 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-07-28 09:06:35] CVMFS is ok
[2025-07-28 09:06:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 09:06:35] Checking for apptainer binary...
[2025-07-28 09:06:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 09:06:35] Running /usr/bin/apptainer --version
[2025-07-28 09:06:35] apptainer version 1.3.2-1.el7
[2025-07-28 09:06:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 09:06:37] cg-vwn356.simple-grid.lan
[2025-07-28 09:06:37] apptainer works
[2025-07-28 09:06:37] Set ATHENA_PROC_NUMBER=8
[2025-07-28 09:06:37] Set ATHENA_CORE_NUMBER=8
[2025-07-28 09:06:37] Starting ATLAS job with PandaID=6747411275
[2025-07-28 09:06:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 13:40:44]  *** The last 200 lines of the pilot log: ***
[2025-07-28 13:40:44] 2025-07-28 11:40:10,554 | INFO     | sum of square deviations: 5513070810.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,556 | INFO     | sum of deviations: 62260366871.99999
[2025-07-28 13:40:44] 2025-07-28 11:40:10,556 | INFO     | mean x: 1753694428.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,556 | INFO     | mean y: 2476128.375478927
[2025-07-28 13:40:44] 2025-07-28 11:40:10,556 | INFO     | -- intersect: -19802395282.057606
[2025-07-28 13:40:44] 2025-07-28 11:40:10,556 | INFO     | intersect: -19802395282.057606
[2025-07-28 13:40:44] 2025-07-28 11:40:10,557 | INFO     | chi2: 1.6769196883530861
[2025-07-28 13:40:44] 2025-07-28 11:40:10,557 | INFO     | current chi2=1.6769196883530861 (change=32.67108362698751 %)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,557 | INFO     | sum of square deviations: 5202255680.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,560 | INFO     | sum of deviations: 60884854265.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,560 | INFO     | mean x: 1753694275.5
[2025-07-28 13:40:44] 2025-07-28 11:40:10,560 | INFO     | mean y: 2475453.0859375
[2025-07-28 13:40:44] 2025-07-28 11:40:10,560 | INFO     | -- intersect: -20521971432.458576
[2025-07-28 13:40:44] 2025-07-28 11:40:10,560 | INFO     | intersect: -20521971432.458576
[2025-07-28 13:40:44] 2025-07-28 11:40:10,561 | INFO     | chi2: 1.6770549620528787
[2025-07-28 13:40:44] 2025-07-28 11:40:10,561 | INFO     | current chi2=1.6770549620528787 (change=-0.008066796563492988 %)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,561 | INFO     | right removable region: 255
[2025-07-28 13:40:44] 2025-07-28 11:40:10,561 | INFO     | sum of square deviations: 5513070810.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,563 | INFO     | sum of deviations: -2619906507.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,564 | INFO     | mean x: 1753694733.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,564 | INFO     | mean y: 2490721.007662835
[2025-07-28 13:40:44] 2025-07-28 11:40:10,564 | INFO     | -- intersect: 835876759.5008502
[2025-07-28 13:40:44] 2025-07-28 11:40:10,564 | INFO     | intersect: 835876759.5008502
[2025-07-28 13:40:44] 2025-07-28 11:40:10,564 | INFO     | chi2: 0.8387213361343918
[2025-07-28 13:40:44] 2025-07-28 11:40:10,565 | INFO     | current chi2=0.8387213361343918 (change=66.32504281924585 %)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,565 | INFO     | sum of square deviations: 5202255680.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,567 | INFO     | sum of deviations: -5948371415.5
[2025-07-28 13:40:44] 2025-07-28 11:40:10,567 | INFO     | mean x: 1753694885.5
[2025-07-28 13:40:44] 2025-07-28 11:40:10,568 | INFO     | mean y: 2492354.03515625
[2025-07-28 13:40:44] 2025-07-28 11:40:10,568 | INFO     | -- intersect: 2007704932.9787476
[2025-07-28 13:40:44] 2025-07-28 11:40:10,568 | INFO     | intersect: 2007704932.9787476
[2025-07-28 13:40:44] 2025-07-28 11:40:10,568 | INFO     | chi2: 0.8342529273618624
[2025-07-28 13:40:44] 2025-07-28 11:40:10,568 | INFO     | current chi2=0.8342529273618624 (change=0.5327644093476855 %)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,569 | INFO     | left removable region: 20
[2025-07-28 13:40:44] 2025-07-28 11:40:10,569 | INFO     | sum of square deviations: 4024149870.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,571 | INFO     | sum of deviations: 7251093607.000001
[2025-07-28 13:40:44] 2025-07-28 11:40:10,571 | INFO     | mean x: 1753694855.0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,571 | INFO     | mean y: 2502832.685106383
[2025-07-28 13:40:44] 2025-07-28 11:40:10,571 | INFO     | -- intersect: -3157470320.0343013
[2025-07-28 13:40:44] 2025-07-28 11:40:10,571 | INFO     | intersect: -3157470320.0343013
[2025-07-28 13:40:44] 2025-07-28 11:40:10,572 | INFO     | chi2: 0.0006230457255247102
[2025-07-28 13:40:44] 2025-07-28 11:40:10,572 | INFO     | -- intersect: -3157470320.0343013
[2025-07-28 13:40:44] 2025-07-28 11:40:10,572 | INFO     | current memory leak: 1.80 B/s (using 235 data points, chi2=0.00)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,573 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,573 | INFO     | ..............................
[2025-07-28 13:40:44] 2025-07-28 11:40:10,573 | INFO     | . Timing measurements:
[2025-07-28 13:40:44] 2025-07-28 11:40:10,573 | INFO     | . get job = 0 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | . initial setup = 3 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | . payload setup = 16 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | . stage-in = 0 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | . payload execution = 16244 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | . stage-out = 3 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | . log creation = 1 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,574 | INFO     | ..............................
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | 
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | job summary report
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | --------------------------------------------------
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | PanDA job id: 6747411275
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | task id: 45743349
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | errors: (none)
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 13:40:44] 2025-07-28 11:40:10,722 | INFO     | pilot state: finished 
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | transexitcode: 0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | exeerrorcode: 0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | exeerrordiag: 
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | exitcode: 0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | exitmsg: OK
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | cpuconsumptiontime: 62689 s
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | nevents: 400
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | neventsw: 0
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | pid: 20540
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | pgrp: 20540
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | corecount: 8
[2025-07-28 13:40:44] 2025-07-28 11:40:10,723 | INFO     | event service: False
[2025-07-28 13:40:44] 2025-07-28 11:40:10,724 | INFO     | sizes: {0: 2397304, 1: 2397503, 12: 2397503, 22: 2397793, 23: 2397821, 16265: 2428827, 16266: 2428954, 16269: 2438008, 16270: 2438064, 16356: 2438258}
[2025-07-28 13:40:44] 2025-07-28 11:40:10,724 | INFO     | --------------------------------------------------
[2025-07-28 13:40:44] 2025-07-28 11:40:10,724 | INFO     | 
[2025-07-28 13:40:44] 2025-07-28 11:40:10,724 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-07-28 13:40:44] 2025-07-28 11:40:11,011 | INFO     | sufficient remaining disk space (496811114496 B)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,011 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,012 | INFO     | size of work directory /var/lib/boinc/slots/7/PanDA_Pilot-6747411275: 3431985 B (within 2537553920 B limit)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,013 | INFO     | pfn file=/var/lib/boinc/slots/7/PanDA_Pilot-6747411275/HITS.45743349._048512.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,013 | INFO     | total size of present files: 0 B (workdir size: 3431985 B)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,013 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/7/PanDA_Pilot-6747411275/HITS.45743349._048512.pool.root.1 since it does not exist
[2025-07-28 13:40:44] 2025-07-28 11:40:11,201 | INFO     | number of running child processes to parent process 20540: 1
[2025-07-28 13:40:44] 2025-07-28 11:40:11,201 | INFO     | maximum number of monitored processes: 7
[2025-07-28 13:40:44] 2025-07-28 11:40:11,202 | INFO     | aborting job monitoring since job object (job id=6747411275) has expired
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,268 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 13:40:44] 2025-07-28 11:40:11,268 | INFO     | job 6747411275 has completed (purged errors)
[2025-07-28 13:40:44] 2025-07-28 11:40:11,268 | INFO     | overall cleanup function is called
[2025-07-28 13:40:44] 2025-07-28 11:40:12,276 | INFO     | --- collectZombieJob: --- 10, [20540]
[2025-07-28 13:40:44] 2025-07-28 11:40:12,277 | INFO     | zombie collector waiting for pid 20540
[2025-07-28 13:40:44] 2025-07-28 11:40:12,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 13:40:44] 2025-07-28 11:40:12,277 | INFO     | collected zombie processes
[2025-07-28 13:40:44] 2025-07-28 11:40:12,277 | INFO     | will attempt to kill all subprocesses of pid=20540
[2025-07-28 13:40:44] 2025-07-28 11:40:12,382 | INFO     | process IDs to be killed: [20540] (in reverse order)
[2025-07-28 13:40:44] 2025-07-28 11:40:12,570 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 13:40:44] 2025-07-28 11:40:12,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 13:40:44] 2025-07-28 11:40:12,573 | INFO     | did not find any defunct processes belonging to 20540
[2025-07-28 13:40:44] 2025-07-28 11:40:12,576 | INFO     | did not find any defunct processes belonging to 20540
[2025-07-28 13:40:44] 2025-07-28 11:40:12,576 | INFO     | ready for new job
[2025-07-28 13:40:44] 2025-07-28 11:40:12,577 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 13:40:44] 2025-07-28 11:40:12,579 | INFO     | ***************************************
[2025-07-28 13:40:44] 2025-07-28 11:40:12,579 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 13:40:44] 2025-07-28 11:40:12,579 | INFO     | ***************************************
[2025-07-28 13:40:44] 2025-07-28 11:40:12,579 | INFO     | 
[2025-07-28 13:40:44] 2025-07-28 11:40:12,579 | INFO     | pilot is running in a VM
[2025-07-28 13:40:44] 2025-07-28 11:40:12,580 | INFO     | architecture information:
[2025-07-28 13:40:44] 2025-07-28 11:40:12,583 | INFO     | executing command: cat /etc/os-release
[2025-07-28 13:40:44] 2025-07-28 11:40:12,634 | INFO     | cat /etc/os-release:
[2025-07-28 13:40:44] NAME="CentOS Linux"
[2025-07-28 13:40:44] VERSION="7 (Core)"
[2025-07-28 13:40:44] ID="centos"
[2025-07-28 13:40:44] ID_LIKE="rhel fedora"
[2025-07-28 13:40:44] VERSION_ID="7"
[2025-07-28 13:40:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 13:40:44] ANSI_COLOR="0;31"
[2025-07-28 13:40:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 13:40:44] HOME_URL="https://www.centos.org/"
[2025-07-28 13:40:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 13:40:44] 
[2025-07-28 13:40:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 13:40:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 13:40:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 13:40:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 13:40:44] 
[2025-07-28 13:40:44] 2025-07-28 11:40:12,635 | INFO     | ***************************************
[2025-07-28 13:40:44] 2025-07-28 11:40:13,140 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-07-28 13:40:44] 2025-07-28 11:40:13,294 | INFO     | sufficient remaining disk space (496885563392 B)
[2025-07-28 13:40:44] 2025-07-28 11:40:13,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 13:40:44] 2025-07-28 11:40:13,295 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 13:40:44] 2025-07-28 11:40:13,295 | INFO     | update_server=False
[2025-07-28 13:40:44] 2025-07-28 11:40:13,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 13:40:44] 2025-07-28 11:40:13,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 13:40:44] 2025-07-28 11:40:13,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 13:40:44] 2025-07-28 11:40:13,360 | INFO     | all data control threads have been joined
[2025-07-28 13:40:44] 2025-07-28 11:40:13,601 | INFO     | all payload control threads have been joined
[2025-07-28 13:40:44] 2025-07-28 11:40:13,707 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 13:40:44] 2025-07-28 11:40:13,708 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 13:40:44] 2025-07-28 11:40:13,708 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:40:44] 2025-07-28 11:40:13,708 | INFO     | will abort loop
[2025-07-28 13:40:44] 2025-07-28 11:40:14,049 | INFO     | all job control threads have been joined
[2025-07-28 13:40:44] 2025-07-28 11:40:14,301 | INFO     | [job] retrieve thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,367 | INFO     | [data] control thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,514 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,570 | INFO     | [payload] failed_post thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,608 | INFO     | [payload] control thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,614 | INFO     | [job] validate thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,626 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,684 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,714 | INFO     | [job] job monitor thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,749 | INFO     | [payload] validate_post thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,780 | INFO     | [data] copytool_in thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:14,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:15,054 | INFO     | [job] control thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:15,308 | INFO     | [data] copytool_out thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:15,736 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 13:40:44] 2025-07-28 11:40:16,742 | INFO     | [job] queue monitor thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:17,307 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 13:40:44] 2025-07-28 11:40:17,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796335785792)>', '<ExcThread(monitor, started 139796034852608)>']
[2025-07-28 13:40:44] 2025-07-28 11:40:22,601 | INFO     | all workflow threads have been joined
[2025-07-28 13:40:44] 2025-07-28 11:40:22,602 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 13:40:44] 2025-07-28 11:40:22,602 | INFO     | traces error code: 0
[2025-07-28 13:40:44] 2025-07-28 11:40:22,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 13:40:44] 2025-07-28 11:40:44,309 | INFO     | PID=9158 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 13:40:44] 2025-07-28 11:40:44,310 | INFO     | .. there are 9 such processes running
[2025-07-28 13:40:44] 2025-07-28 11:40:44,312 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 13:40:44] 2025-07-28 11:40:44,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 13:40:44] 2025-07-28 11:40:44,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 13:40:44] 2025-07-28 11:40:44,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 13:40:44] 2025-07-28 11:40:44,313 | INFO     | [monitor] control thread has ended
[2025-07-28 13:40:44] 2025-07-28 11:40:44,584 [wrapper] ==== pilot stdout END ====
[2025-07-28 13:40:44] 2025-07-28 11:40:44,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 13:40:44] 2025-07-28 11:40:44,596 [wrapper] pilotpid: 9158
[2025-07-28 13:40:44] 2025-07-28 11:40:44,599 [wrapper] Pilot exit status: 0
[2025-07-28 13:40:44] 2025-07-28 11:40:44,656 [wrapper] pandaids: 6747411275
[2025-07-28 13:40:44] 2025-07-28 11:40:44,694 [wrapper] cleanup supervisor_pilot  6935 9159
[2025-07-28 13:40:44] 2025-07-28 11:40:44,766 [wrapper] Test setup, not cleaning
[2025-07-28 13:40:44] 2025-07-28 11:40:44,771 [wrapper] apfmon messages muted
[2025-07-28 13:40:44] 2025-07-28 11:40:44,778 [wrapper] ==== wrapper stdout END ====
[2025-07-28 13:40:44] 2025-07-28 11:40:44,781 [wrapper] ==== wrapper stderr END ====
[2025-07-28 13:40:44]  *** Error codes and diagnostics ***
[2025-07-28 13:40:45]     "exeErrorCode": 0,
[2025-07-28 13:40:45]     "exeErrorDiag": "",
[2025-07-28 13:40:45]     "pilotErrorCode": 0,
[2025-07-28 13:40:45]     "pilotErrorDiag": "",
[2025-07-28 13:40:45]  *** Listing of results directory ***
[2025-07-28 13:40:45] total 359744
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc    530466 Jul 27 13:59 pilot3.tar.gz
[2025-07-28 13:40:45] -rwx------. 1 boinc boinc     36292 Jul 27 14:35 runpilot2-wrapper.sh
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc      5112 Jul 27 14:35 queuedata.json
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc       100 Jul 28 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 13:40:45] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 09:06 run_atlas
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc       105 Jul 28 09:06 job.xml
[2025-07-28 13:40:45] -rw-r--r--. 2 boinc boinc 149710719 Jul 28 09:06 EVNT.45743347._002690.pool.root.1
[2025-07-28 13:40:45] drwxrwx--x. 2 boinc boinc        68 Jul 28 09:06 shared
[2025-07-28 13:40:45] -rw-r--r--. 2 boinc boinc    542900 Jul 28 09:06 input.tar.gz
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc      6392 Jul 28 09:06 init_data.xml
[2025-07-28 13:40:45] -rw-r--r--. 2 boinc boinc     15095 Jul 28 09:06 start_atlas.sh
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc         0 Jul 28 09:06 boinc_lockfile
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc      2563 Jul 28 09:06 pandaJob.out
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc    978460 Jul 28 09:07 agis_schedconf.cvmfs.json
[2025-07-28 13:40:45] drwx------. 4 boinc boinc      4096 Jul 28 09:07 pilot3
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc 211201739 Jul 28 13:37 HITS.45743349._048512.pool.root.1
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc       531 Jul 28 13:37 boinc_task_state.xml
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc      1028 Jul 28 13:38 memory_monitor_summary.json
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc   1593052 Jul 28 13:38 agis_ddmendpoints.agis.ALL.json
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc    400661 Jul 28 13:38 log.45743349._048512.job.log.tgz.1
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc      7776 Jul 28 13:40 heartbeat.json
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc        28 Jul 28 13:40 wrapper_checkpoint.txt
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc      8192 Jul 28 13:40 boinc_mmap_file
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc        95 Jul 28 13:40 pilot_heartbeat.json
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc       819 Jul 28 13:40 pilotlog.txt
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc   1406195 Jul 28 13:40 log.45743349._048512.job.log.1
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc       357 Jul 28 13:40 output.list
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc       620 Jul 28 13:40 runtime_log
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc   1822720 Jul 28 13:40 result.tar.gz
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc       656 Jul 28 13:40 vUBNDmKmF07n9Rq4apOajLDm4fhM0noT9bVof3QYDmgY2KDmEKRftm.diag
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc      8660 Jul 28 13:40 runtime_log.err
[2025-07-28 13:40:45] -rw-r--r--. 1 boinc boinc     21119 Jul 28 13:40 stderr.txt
[2025-07-28 13:40:45] HITS file was successfully produced:
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc 211201739 Jul 28 13:37 shared/HITS.pool.root.1
[2025-07-28 13:40:45]  *** Contents of shared directory: ***
[2025-07-28 13:40:45] total 354784
[2025-07-28 13:40:45] -rw-r--r--. 2 boinc boinc 149710719 Jul 28 09:06 ATLAS.root_0
[2025-07-28 13:40:45] -rw-r--r--. 2 boinc boinc    542900 Jul 28 09:06 input.tar.gz
[2025-07-28 13:40:45] -rw-r--r--. 2 boinc boinc     15095 Jul 28 09:06 start_atlas.sh
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc 211201739 Jul 28 13:37 HITS.pool.root.1
[2025-07-28 13:40:45] -rw-------. 1 boinc boinc   1822720 Jul 28 13:40 result.tar.gz
13:40:46 (1646): run_atlas exited; CPU time 62895.190957
13:40:46 (1646): called boinc_finish(0)

</stderr_txt>
]]>

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