Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:18:39 (388451): wrapper (7.7.26015): starting
15:18:39 (388451): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:18:39] Arguments: --nthreads 12
[2025-07-27 15:18:39] Threads: 12
[2025-07-27 15:18:39] Checking for CVMFS
[2025-07-27 15:18:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:18:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:18:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:18:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:18:40] 2.12.6.0 18753 18793 317896 148822 1 92 32729195 32935937 10103 16776704 0 33585978 99.625 72609917 26049 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.230.184:3128 1
[2025-07-27 15:18:40] CVMFS is ok
[2025-07-27 15:18:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:18:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:18:40] Further information can be found at the LHC@home message board.
[2025-07-27 15:18:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:18:40] Checking for apptainer binary...
[2025-07-27 15:18:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:18:40] Running /usr/bin/apptainer --version
[2025-07-27 15:18:40] apptainer version 1.4.1-1.el9
[2025-07-27 15:18:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:18:40] c6-1-24-4.aglt2.org
[2025-07-27 15:18:40] apptainer works
[2025-07-27 15:18:40] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:18:40] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:18:40] Starting ATLAS job with PandaID=6747411323
[2025-07-27 15:18:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:41:16]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:41:16]  lfn=log.45743349._048560.job.log.tgz.1
[2025-07-27 16:41:16]  mtime=0
[2025-07-27 16:41:16]  protocol_id=None
[2025-07-27 16:41:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:41:16]  replicas=None
[2025-07-27 16:41:16]  scope=mc23_13p6TeV
[2025-07-27 16:41:16]  status=None
[2025-07-27 16:41:16]  status_code=0
[2025-07-27 16:41:16]  storage_token=
[2025-07-27 16:41:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747411323/log.45743349._048560.job.log.tgz.1
[2025-07-27 16:41:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/3a/log.45743349._048560.job.log.tgz.1
[2025-07-27 16:41:16]  workdir=None
[2025-07-27 16:41:16] ]
[2025-07-27 16:41:16] 2025-07-27 20:40:35,710 | INFO     | transferring file log.45743349._048560.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747411323/log.45743349._048560.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:41:16] 2025-07-27 20:40:35,710 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747411323/log.45743349._048560.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._048560.job
[2025-07-27 16:41:16] 2025-07-27 20:40:35,730 | INFO     | adding to output.list: log.45743349._048560.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/3a/log.45743349._048560.job.log.tg
[2025-07-27 16:41:16] 2025-07-27 20:40:35,732 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:41:16] 2025-07-27 20:40:35,732 | INFO     | summary of transferred files:
[2025-07-27 16:41:16] 2025-07-27 20:40:35,732 | INFO     |  -- lfn=log.45743349._048560.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:41:16] 2025-07-27 20:40:35,733 | INFO     | stage-out finished correctly
[2025-07-27 16:41:16] 2025-07-27 20:40:36,918 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:41:16] 2025-07-27 20:40:37,487 | INFO     | job 6747411323 has state=finished
[2025-07-27 16:41:16] 2025-07-27 20:40:37,487 | INFO     | preparing for final server update for job 6747411323 in state='finished'
[2025-07-27 16:41:16] 2025-07-27 20:40:37,487 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:41:16] 2025-07-27 20:40:37,488 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:41:16] 2025-07-27 20:40:37,488 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:41:16] 2025-07-27 20:40:37,488 | INFO     | job 6747411323 has finished - writing final server update
[2025-07-27 16:41:16] 2025-07-27 20:40:37,488 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:41:16] 2025-07-27 20:40:37,516 | INFO     | executing command: lscpu
[2025-07-27 16:41:16] 2025-07-27 20:40:37,584 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:41:16] 2025-07-27 20:40:37,755 | INFO     | PID=392039 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 16:41:16] 2025-07-27 20:40:37,755 | INFO     | .. there are 12 such processes running
[2025-07-27 16:41:16] 2025-07-27 20:40:41,057 | WARNING  | process 399757 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:41:16] 2025-07-27 20:40:41,057 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411323/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:41:16] 2025-07-27 20:40:41,328 | INFO     | number of running child processes to parent process 399757: 1
[2025-07-27 16:41:16] 2025-07-27 20:40:41,328 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:41:16] 2025-07-27 20:40:42,771 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:41:16] 2025-07-27 20:40:42,774 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2836.0897499999996
[2025-07-27 16:41:16] 2025-07-27 20:40:42,780 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411323/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:41:16] 2025-07-27 20:40:42,781 | INFO     | extracted standard info from prmon json
[2025-07-27 16:41:16] 2025-07-27 20:40:42,781 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:41:16] 2025-07-27 20:40:42,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:41:16] 2025-07-27 20:40:42,781 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:41:16] 2025-07-27 20:40:42,781 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:41:16] 2025-07-27 20:40:42,783 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:41:16] 2025-07-27 20:40:42,783 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,783 | INFO     | sum of deviations: -12507595550.0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,783 | INFO     | mean x: 1753646468.0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,783 | INFO     | mean y: 2653377.835616438
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | -- intersect: 181868175557.03934
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | intersect: 181868175557.03934
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | chi2: 0.17481028581988384
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | -- intersect: 181868175557.03934
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | current memory leak: -103.71 B/s (using 73 data points, chi2=0.17)
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | could have reported an average CPU frequency of 2625 MHz (6 samples)
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | ..............................
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | . Timing measurements:
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | . get job = 0 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | . initial setup = 2 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,784 | INFO     | . payload setup = 9 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,785 | INFO     | . stage-in = 0 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,785 | INFO     | . payload execution = 4870 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,785 | INFO     | . stage-out = 0 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,785 | INFO     | . log creation = 0 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,785 | INFO     | ..............................
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | 
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | job summary report
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | --------------------------------------------------
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | PanDA job id: 6747411323
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | task id: 45743349
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | errors: (none)
[2025-07-27 16:41:16] 2025-07-27 20:40:42,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | pilot state: finished 
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | transexitcode: 0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | exeerrorcode: 0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | exeerrordiag: 
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | exitcode: 0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | exitmsg: OK
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | cpuconsumptiontime: 50243 s
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | nevents: 400
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | neventsw: 0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | pid: 399757
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | pgrp: 399757
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | corecount: 12
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | event service: False
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 12: 2397793, 4883: 2423951, 4884: 2432949, 4885: 2433133, 4891: 2433327}
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | --------------------------------------------------
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | 
[2025-07-27 16:41:16] 2025-07-27 20:40:42,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:41:16] 2025-07-27 20:40:42,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | job 6747411323 has completed (purged errors)
[2025-07-27 16:41:16] 2025-07-27 20:40:42,893 | INFO     | overall cleanup function is called
[2025-07-27 16:41:16] 2025-07-27 20:40:43,900 | INFO     | --- collectZombieJob: --- 10, [399757]
[2025-07-27 16:41:16] 2025-07-27 20:40:43,901 | INFO     | zombie collector waiting for pid 399757
[2025-07-27 16:41:16] 2025-07-27 20:40:43,901 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:41:16] 2025-07-27 20:40:43,901 | INFO     | collected zombie processes
[2025-07-27 16:41:16] 2025-07-27 20:40:43,901 | INFO     | will attempt to kill all subprocesses of pid=399757
[2025-07-27 16:41:16] 2025-07-27 20:40:44,120 | INFO     | process IDs to be killed: [399757] (in reverse order)
[2025-07-27 16:41:16] 2025-07-27 20:40:44,215 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:41:16] 2025-07-27 20:40:44,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:41:16] 2025-07-27 20:40:44,226 | INFO     | did not find any defunct processes belonging to 399757
[2025-07-27 16:41:16] 2025-07-27 20:40:44,236 | INFO     | did not find any defunct processes belonging to 399757
[2025-07-27 16:41:16] 2025-07-27 20:40:44,236 | INFO     | ready for new job
[2025-07-27 16:41:16] 2025-07-27 20:40:44,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:41:16] 2025-07-27 20:40:44,238 | INFO     | ***************************************
[2025-07-27 16:41:16] 2025-07-27 20:40:44,238 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:41:16] 2025-07-27 20:40:44,239 | INFO     | ***************************************
[2025-07-27 16:41:16] 2025-07-27 20:40:44,239 | INFO     | 
[2025-07-27 16:41:16] 2025-07-27 20:40:44,253 | INFO     | architecture information:
[2025-07-27 16:41:16] 2025-07-27 20:40:44,253 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:41:16] 2025-07-27 20:40:44,270 | INFO     | cat /etc/os-release:
[2025-07-27 16:41:16] NAME="CentOS Linux"
[2025-07-27 16:41:16] VERSION="7 (Core)"
[2025-07-27 16:41:16] ID="centos"
[2025-07-27 16:41:16] ID_LIKE="rhel fedora"
[2025-07-27 16:41:16] VERSION_ID="7"
[2025-07-27 16:41:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:41:16] ANSI_COLOR="0;31"
[2025-07-27 16:41:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:41:16] HOME_URL="https://www.centos.org/"
[2025-07-27 16:41:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:41:16] 
[2025-07-27 16:41:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:41:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:41:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:41:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:41:16] 
[2025-07-27 16:41:16] 2025-07-27 20:40:44,271 | INFO     | ***************************************
[2025-07-27 16:41:16] 2025-07-27 20:40:44,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:41:16] 2025-07-27 20:40:44,796 | INFO     | sufficient remaining disk space (76439093248 B)
[2025-07-27 16:41:16] 2025-07-27 20:40:44,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:41:16] 2025-07-27 20:40:44,796 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:41:16] 2025-07-27 20:40:44,796 | INFO     | update_server=False
[2025-07-27 16:41:16] 2025-07-27 20:40:44,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:41:16] 2025-07-27 20:40:44,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:41:16] 2025-07-27 20:40:44,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:41:16] 2025-07-27 20:40:44,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:41:16] 2025-07-27 20:40:44,838 | INFO     | aborting loop
[2025-07-27 16:41:16] 2025-07-27 20:40:45,506 | INFO     | all data control threads have been joined
[2025-07-27 16:41:16] 2025-07-27 20:40:45,510 | INFO     | all payload control threads have been joined
[2025-07-27 16:41:16] 2025-07-27 20:40:45,801 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:45,802 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:45,842 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,178 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,196 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,339 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,403 | INFO     | all job control threads have been joined
[2025-07-27 16:41:16] 2025-07-27 20:40:46,511 | INFO     | [data] control thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,516 | INFO     | [payload] control thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,661 | INFO     | [job] validate thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,802 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:46,823 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:47,141 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:47,267 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:47,408 | INFO     | [job] control thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:47,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:41:16] 2025-07-27 20:40:51,523 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:55,563 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:41:16] 2025-07-27 20:40:56,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:41:16] 2025-07-27 20:40:56,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763325011776)>', '<ExcThread(monitor, started 139762815964928)>']
[2025-07-27 16:41:16] 2025-07-27 20:41:01,998 | INFO     | all workflow threads have been joined
[2025-07-27 16:41:16] 2025-07-27 20:41:01,998 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:41:16] 2025-07-27 20:41:01,998 | INFO     | traces error code: 0
[2025-07-27 16:41:16] 2025-07-27 20:41:01,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:41:16] 2025-07-27 20:41:16,126 | INFO     | PID=392039 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 16:41:16] 2025-07-27 20:41:16,126 | INFO     | .. there are 12 such processes running
[2025-07-27 16:41:16] 2025-07-27 20:41:16,127 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:41:16] 2025-07-27 20:41:16,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:41:16] 2025-07-27 20:41:16,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:41:16] 2025-07-27 20:41:16,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:41:16] 2025-07-27 20:41:16,127 | INFO     | [monitor] control thread has ended
[2025-07-27 16:41:16] 2025-07-27 20:41:16,310 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:41:16] 2025-07-27 20:41:16,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:41:16] 2025-07-27 20:41:16,320 [wrapper] pilotpid: 392039
[2025-07-27 16:41:16] 2025-07-27 20:41:16,324 [wrapper] Pilot exit status: 0
[2025-07-27 16:41:16] 2025-07-27 20:41:16,344 [wrapper] pandaids: 6747411323
[2025-07-27 16:41:16] 2025-07-27 20:41:16,413 [wrapper] cleanup supervisor_pilot  658147 392040
[2025-07-27 16:41:16] 2025-07-27 20:41:16,416 [wrapper] Test setup, not cleaning
[2025-07-27 16:41:16] 2025-07-27 20:41:16,420 [wrapper] apfmon messages muted
[2025-07-27 16:41:16] 2025-07-27 20:41:16,422 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:41:16] 2025-07-27 20:41:16,427 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:41:16]  *** Error codes and diagnostics ***
[2025-07-27 16:41:16]     "exeErrorCode": 0,
[2025-07-27 16:41:16]     "exeErrorDiag": "",
[2025-07-27 16:41:16]     "pilotErrorCode": 0,
[2025-07-27 16:41:16]     "pilotErrorDiag": "",
[2025-07-27 16:41:16]  *** Listing of results directory ***
[2025-07-27 16:41:16] total 358676
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:59 pilot3.tar.gz
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 08:39 queuedata.json
[2025-07-27 16:41:16] -rwx------. 1 boincer umatlas     36292 Jul 27 08:39 runpilot2-wrapper.sh
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas       100 Jul 27 15:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:41:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 15:18 run_atlas
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas       105 Jul 27 15:18 job.xml
[2025-07-27 16:41:16] -rw-r--r--. 2 boincer umatlas 147808572 Jul 27 15:18 EVNT.45743347._002693.pool.root.1
[2025-07-27 16:41:16] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 15:18 input.tar.gz
[2025-07-27 16:41:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:18 start_atlas.sh
[2025-07-27 16:41:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 15:18 shared
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas         0 Jul 27 15:18 boinc_lockfile
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 15:18 pandaJob.out
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas    980125 Jul 27 15:18 agis_schedconf.cvmfs.json
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas   1593052 Jul 27 15:18 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:41:16] drwx------. 4 boincer umatlas      4096 Jul 27 15:18 pilot3
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas 213915298 Jul 27 16:39 HITS.45743349._048560.pool.root.1
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:40 boinc_task_state.xml
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas        95 Jul 27 16:40 pilot_heartbeat.json
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas      1039 Jul 27 16:40 memory_monitor_summary.json
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas    363585 Jul 27 16:40 log.45743349._048560.job.log.tgz.1
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas      7826 Jul 27 16:40 heartbeat.json
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas      6843 Jul 27 16:40 init_data.xml
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:41 boinc_mmap_file
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:41 wrapper_checkpoint.txt
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas       822 Jul 27 16:41 pilotlog.txt
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas    480668 Jul 27 16:41 log.45743349._048560.job.log.1
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas       357 Jul 27 16:41 output.list
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:41 runtime_log
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas    860160 Jul 27 16:41 result.tar.gz
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 16:41 runtime_log.err
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas       654 Jul 27 16:41 dz1LDmZqF07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0HVLDmKiCUHm.diag
[2025-07-27 16:41:16] -rw-r--r--. 1 boincer umatlas     21731 Jul 27 16:41 stderr.txt
[2025-07-27 16:41:16] HITS file was successfully produced:
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas 213915298 Jul 27 16:39 shared/HITS.pool.root.1
[2025-07-27 16:41:16]  *** Contents of shared directory: ***
[2025-07-27 16:41:16] total 354644
[2025-07-27 16:41:16] -rw-r--r--. 2 boincer umatlas 147808572 Jul 27 15:18 ATLAS.root_0
[2025-07-27 16:41:16] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 15:18 input.tar.gz
[2025-07-27 16:41:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 15:18 start_atlas.sh
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas 213915298 Jul 27 16:39 HITS.pool.root.1
[2025-07-27 16:41:16] -rw-------. 1 boincer umatlas    860160 Jul 27 16:41 result.tar.gz
16:41:17 (388451): run_atlas exited; CPU time 50282.194560
16:41:17 (388451): called boinc_finish(0)

</stderr_txt>
]]>

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