Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:57:23 (630374): wrapper (7.7.26015): starting
07:57:23 (630374): wrapper: running run_atlas (--nthreads 6)
[2025-07-28 07:57:23] Arguments: --nthreads 6
[2025-07-28 07:57:23] Threads: 6
[2025-07-28 07:57:23] Checking for CVMFS
[2025-07-28 07:57:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 07:57:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 07:57:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 07:57:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 07:57:24] 2.11.5.0 2646 982 68956 148827 3 57 29518832 52428800 28 130560 0 1726915 99.996 33177 14 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-28 07:57:24] CVMFS is ok
[2025-07-28 07:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 07:57:24] Checking for apptainer binary...
[2025-07-28 07:57:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 07:57:24] Running /usr/bin/apptainer --version
[2025-07-28 07:57:24] apptainer version 1.3.6-1.el9
[2025-07-28 07:57:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 07:57:24] testio002
[2025-07-28 07:57:24] apptainer works
[2025-07-28 07:57:24] Set ATHENA_PROC_NUMBER=6
[2025-07-28 07:57:24] Set ATHENA_CORE_NUMBER=6
[2025-07-28 07:57:24] Starting ATLAS job with PandaID=6747411371
[2025-07-28 07:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 09:15:38]  *** The last 200 lines of the pilot log: ***
[2025-07-28 09:15:38] 2025-07-28 00:14:23,378 | INFO     | monitor loop #350: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:23,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:25,880 | INFO     | monitor loop #351: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:25,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:28,383 | INFO     | monitor loop #352: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:28,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:30,886 | INFO     | monitor loop #353: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:30,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:31,762 | INFO     | PID=636237 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 09:15:38] 2025-07-28 00:14:31,762 | INFO     | .. there are 2 such processes running
[2025-07-28 09:15:38] 2025-07-28 00:14:33,389 | INFO     | monitor loop #354: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:33,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:35,892 | INFO     | monitor loop #355: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:35,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:38,395 | INFO     | monitor loop #356: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:38,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:40,897 | INFO     | monitor loop #357: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:40,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:43,400 | INFO     | monitor loop #358: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:43,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:45,902 | INFO     | monitor loop #359: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:45,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:48,405 | INFO     | monitor loop #360: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:48,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:50,908 | INFO     | monitor loop #361: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:50,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:53,411 | INFO     | monitor loop #362: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:53,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:53,853 | INFO     | PID=636237 has CPU usage=0.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 09:15:38] 2025-07-28 00:14:53,853 | INFO     | .. there are 2 such processes running
[2025-07-28 09:15:38] 2025-07-28 00:14:55,914 | INFO     | monitor loop #363: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:55,914 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:14:58,416 | INFO     | monitor loop #364: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:14:58,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:15:00,919 | INFO     | monitor loop #365: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:15:00,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:15:03,422 | INFO     | monitor loop #366: job 0:6747411371 is in state 'finished'
[2025-07-28 09:15:38] 2025-07-28 00:15:03,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,711 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 09:15:38] 2025-07-28 00:15:05,712 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4173.71775
[2025-07-28 09:15:38] 2025-07-28 00:15:05,713 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6747411371/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,713 | INFO     | extracted standard info from prmon json
[2025-07-28 09:15:38] 2025-07-28 00:15:05,713 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 09:15:38] 2025-07-28 00:15:05,713 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 09:15:38] 2025-07-28 00:15:05,713 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 09:15:38] 2025-07-28 00:15:05,713 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | fitting pss+swap vs Time
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | sum of square deviations: 97479037.0
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | sum of deviations: 14524201595.500002
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | mean x: 1753659412.5
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | mean y: 2404458.338235294
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | -- intersect: -261289701217.63495
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | intersect: -261289701217.63495
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | chi2: 1.474515000153972
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | -- intersect: -261289701217.63495
[2025-07-28 09:15:38] 2025-07-28 00:15:05,714 | INFO     | current memory leak: 149.00 B/s (using 68 data points, chi2=1.47)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | could have reported an average CPU frequency of 4269 MHz (6 samples)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | ..............................
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . Timing measurements:
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . get job = 0 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . initial setup = 3 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . payload setup = 1 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . stage-in = 0 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . payload execution = 4571 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . stage-out = 0 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | . log creation = 0 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,715 | INFO     | ..............................
[2025-07-28 09:15:38] 2025-07-28 00:15:05,741 | INFO     | 
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | job summary report
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | --------------------------------------------------
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | PanDA job id: 6747411371
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | task id: 45743349
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | errors: (none)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | pilot state: finished 
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | transexitcode: 0
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | exeerrorcode: 0
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | exeerrordiag: 
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | exitcode: 0
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | exitmsg: OK
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | cpuconsumptiontime: 23209 s
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | nevents: 400
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | neventsw: 0
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | pid: 653442
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | pgrp: 653442
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | corecount: 6
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | event service: False
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | sizes: {0: 2397424, 1: 2397686, 10: 2397714, 4577: 2432924, 4578: 2432924, 4644: 2433118}
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | --------------------------------------------------
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | 
[2025-07-28 09:15:38] 2025-07-28 00:15:05,742 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-28 09:15:38] 2025-07-28 00:15:05,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | job 6747411371 has completed (purged errors)
[2025-07-28 09:15:38] 2025-07-28 00:15:05,749 | INFO     | overall cleanup function is called
[2025-07-28 09:15:38] 2025-07-28 00:15:06,755 | INFO     | --- collectZombieJob: --- 10, [653442]
[2025-07-28 09:15:38] 2025-07-28 00:15:06,755 | INFO     | zombie collector waiting for pid 653442
[2025-07-28 09:15:38] 2025-07-28 00:15:06,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 09:15:38] 2025-07-28 00:15:06,756 | INFO     | collected zombie processes
[2025-07-28 09:15:38] 2025-07-28 00:15:06,756 | INFO     | will attempt to kill all subprocesses of pid=653442
[2025-07-28 09:15:38] 2025-07-28 00:15:06,787 | INFO     | process IDs to be killed: [653442] (in reverse order)
[2025-07-28 09:15:38] 2025-07-28 00:15:06,799 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 09:15:38] 2025-07-28 00:15:06,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 09:15:38] 2025-07-28 00:15:06,800 | INFO     | did not find any defunct processes belonging to 653442
[2025-07-28 09:15:38] 2025-07-28 00:15:06,801 | INFO     | did not find any defunct processes belonging to 653442
[2025-07-28 09:15:38] 2025-07-28 00:15:06,801 | INFO     | ready for new job
[2025-07-28 09:15:38] 2025-07-28 00:15:06,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 09:15:38] 2025-07-28 00:15:06,801 | INFO     | ***************************************
[2025-07-28 09:15:38] 2025-07-28 00:15:06,801 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 09:15:38] 2025-07-28 00:15:06,802 | INFO     | ***************************************
[2025-07-28 09:15:38] 2025-07-28 00:15:06,802 | INFO     | 
[2025-07-28 09:15:38] 2025-07-28 00:15:06,802 | INFO     | architecture information:
[2025-07-28 09:15:38] 2025-07-28 00:15:06,802 | INFO     | executing command: cat /etc/os-release
[2025-07-28 09:15:38] 2025-07-28 00:15:06,806 | INFO     | cat /etc/os-release:
[2025-07-28 09:15:38] NAME="CentOS Linux"
[2025-07-28 09:15:38] VERSION="7 (Core)"
[2025-07-28 09:15:38] ID="centos"
[2025-07-28 09:15:38] ID_LIKE="rhel fedora"
[2025-07-28 09:15:38] VERSION_ID="7"
[2025-07-28 09:15:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 09:15:38] ANSI_COLOR="0;31"
[2025-07-28 09:15:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 09:15:38] HOME_URL="https://www.centos.org/"
[2025-07-28 09:15:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 09:15:38] 
[2025-07-28 09:15:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 09:15:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 09:15:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 09:15:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 09:15:38] 
[2025-07-28 09:15:38] 2025-07-28 00:15:06,806 | INFO     | ***************************************
[2025-07-28 09:15:38] 2025-07-28 00:15:07,308 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | INFO     | sufficient remaining disk space (315150565376 B)
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | INFO     | update_server=False
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 09:15:38] 2025-07-28 00:15:07,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 09:15:38] 2025-07-28 00:15:07,320 | INFO     | aborting loop
[2025-07-28 09:15:38] 2025-07-28 00:15:07,408 | INFO     | all data control threads have been joined
[2025-07-28 09:15:38] 2025-07-28 00:15:07,851 | INFO     | all payload control threads have been joined
[2025-07-28 09:15:38] 2025-07-28 00:15:08,320 | INFO     | [job] queue monitor thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:08,324 | INFO     | [job] job monitor thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:08,324 | INFO     | [job] retrieve thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:08,413 | INFO     | [data] control thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:08,617 | INFO     | [payload] failed_post thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:08,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 09:15:38] 2025-07-28 00:15:08,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 09:15:38] 2025-07-28 00:15:08,819 | INFO     | [data] copytool_in thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:08,856 | INFO     | [payload] control thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:09,003 | INFO     | all job control threads have been joined
[2025-07-28 09:15:38] 2025-07-28 00:15:09,159 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:09,179 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:09,183 | INFO     | [job] validate thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:09,406 | INFO     | [payload] validate_post thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:09,461 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:09,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:10,009 | INFO     | [job] control thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:10,705 | INFO     | [data] copytool_out thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:12,792 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 09:15:38] 2025-07-28 00:15:13,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140700063614784)>', '<ExcThread(monitor, started 140699278231296)>']
[2025-07-28 09:15:38] 2025-07-28 00:15:18,451 | INFO     | all workflow threads have been joined
[2025-07-28 09:15:38] 2025-07-28 00:15:18,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 09:15:38] 2025-07-28 00:15:18,452 | INFO     | traces error code: 0
[2025-07-28 09:15:38] 2025-07-28 00:15:18,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 09:15:38] 2025-07-28 00:15:38,000 | INFO     | PID=636237 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 09:15:38] 2025-07-28 00:15:38,001 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 09:15:38] 2025-07-28 00:15:38,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 09:15:38] 2025-07-28 00:15:38,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 09:15:38] 2025-07-28 00:15:38,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 09:15:38] 2025-07-28 00:15:38,001 | INFO     | [monitor] control thread has ended
[2025-07-28 09:15:38] 2025-07-28 00:15:38,031 [wrapper] ==== pilot stdout END ====
[2025-07-28 09:15:38] 2025-07-28 00:15:38,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 09:15:38] 2025-07-28 00:15:38,033 [wrapper] pilotpid: 636237
[2025-07-28 09:15:38] 2025-07-28 00:15:38,033 [wrapper] Pilot exit status: 0
[2025-07-28 09:15:38] 2025-07-28 00:15:38,035 [wrapper] pandaids: 6747411371
[2025-07-28 09:15:38] 2025-07-28 00:15:38,042 [wrapper] cleanup supervisor_pilot  671887 636238
[2025-07-28 09:15:38] 2025-07-28 00:15:38,043 [wrapper] Test setup, not cleaning
[2025-07-28 09:15:38] 2025-07-28 00:15:38,043 [wrapper] apfmon messages muted
[2025-07-28 09:15:38] 2025-07-28 00:15:38,044 [wrapper] ==== wrapper stdout END ====
[2025-07-28 09:15:38] 2025-07-28 00:15:38,045 [wrapper] ==== wrapper stderr END ====
[2025-07-28 09:15:38]  *** Error codes and diagnostics ***
[2025-07-28 09:15:38]     "exeErrorCode": 0,
[2025-07-28 09:15:38]     "exeErrorDiag": "",
[2025-07-28 09:15:38]     "pilotErrorCode": 0,
[2025-07-28 09:15:38]     "pilotErrorDiag": "",
[2025-07-28 09:15:38]  *** Listing of results directory ***
[2025-07-28 09:15:38] total 437516
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc    530466 Jul 27 21:48 pilot3.tar.gz
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc      5112 Jul 27 21:50 queuedata.json
[2025-07-28 09:15:38] -rwx------. 1 boinc boinc     36292 Jul 27 21:51 runpilot2-wrapper.sh
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc       100 Jul 28 07:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 09:15:38] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 07:57 run_atlas
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc       105 Jul 28 07:57 job.xml
[2025-07-28 09:15:38] -rw-r--r--. 2 boinc boinc 232715210 Jul 28 07:57 EVNT.45743347._002695.pool.root.1
[2025-07-28 09:15:38] -rw-r--r--. 2 boinc boinc     15095 Jul 28 07:57 start_atlas.sh
[2025-07-28 09:15:38] drwxrwx--x. 2 boinc boinc        68 Jul 28 07:57 shared
[2025-07-28 09:15:38] -rw-r--r--. 2 boinc boinc    542894 Jul 28 07:57 input.tar.gz
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc      9627 Jul 28 07:57 init_data.xml
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc         0 Jul 28 07:57 boinc_lockfile
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc      2562 Jul 28 07:57 pandaJob.out
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc    980109 Jul 28 07:57 agis_schedconf.cvmfs.json
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc   1593052 Jul 28 07:57 agis_ddmendpoints.agis.ALL.json
[2025-07-28 09:15:38] drwx------. 4 boinc boinc      4096 Jul 28 07:57 pilot3
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc 209913011 Jul 28 09:13 HITS.45743349._048608.pool.root.1
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc      1026 Jul 28 09:13 memory_monitor_summary.json
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc       529 Jul 28 09:13 boinc_task_state.xml
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc    276231 Jul 28 09:13 log.45743349._048608.job.log.tgz.1
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc        95 Jul 28 09:14 pilot_heartbeat.json
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc      7791 Jul 28 09:15 heartbeat.json
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc      8192 Jul 28 09:15 boinc_mmap_file
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc        27 Jul 28 09:15 wrapper_checkpoint.txt
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc       746 Jul 28 09:15 pilotlog.txt
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc    483553 Jul 28 09:15 log.45743349._048608.job.log.1
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc       357 Jul 28 09:15 output.list
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc       620 Jul 28 09:15 runtime_log
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc    778240 Jul 28 09:15 result.tar.gz
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc      8618 Jul 28 09:15 runtime_log.err
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc       641 Jul 28 09:15 HWNKDmJ2F07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqIVLDmdDhdIm.diag
[2025-07-28 09:15:38] -rw-r--r--. 1 boinc boinc     22176 Jul 28 09:15 stderr.txt
[2025-07-28 09:15:38] HITS file was successfully produced:
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc 209913011 Jul 28 09:13 shared/HITS.pool.root.1
[2025-07-28 09:15:38]  *** Contents of shared directory: ***
[2025-07-28 09:15:38] total 433568
[2025-07-28 09:15:38] -rw-r--r--. 2 boinc boinc 232715210 Jul 28 07:57 ATLAS.root_0
[2025-07-28 09:15:38] -rw-r--r--. 2 boinc boinc     15095 Jul 28 07:57 start_atlas.sh
[2025-07-28 09:15:38] -rw-r--r--. 2 boinc boinc    542894 Jul 28 07:57 input.tar.gz
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc 209913011 Jul 28 09:13 HITS.pool.root.1
[2025-07-28 09:15:38] -rw-------. 1 boinc boinc    778240 Jul 28 09:15 result.tar.gz
09:15:39 (630374): run_atlas exited; CPU time 23229.976126
09:15:39 (630374): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN