Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:46:10 (93471): wrapper (7.7.26015): starting
14:46:10 (93471): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 14:46:10] Arguments: --nthreads 12
[2025-07-27 14:46:10] Threads: 12
[2025-07-27 14:46:10] Checking for CVMFS
[2025-07-27 14:46:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:46:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:46:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:46:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:46:11] 2.13.0.0 1190652 18742 330940 148821 2 179 20570760 32935936 6559 16776704 0 33767783 99.724 58061666 29270 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 14:46:11] CVMFS is ok
[2025-07-27 14:46:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:46:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:46:11] Further information can be found at the LHC@home message board.
[2025-07-27 14:46:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:46:11] Checking for apptainer binary...
[2025-07-27 14:46:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:46:11] Running /usr/bin/apptainer --version
[2025-07-27 14:46:11] apptainer version 1.4.1-1.el9
[2025-07-27 14:46:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:46:11] c6-1-26-3.aglt2.org
[2025-07-27 14:46:11] apptainer works
[2025-07-27 14:46:11] Set ATHENA_PROC_NUMBER=12
[2025-07-27 14:46:11] Set ATHENA_CORE_NUMBER=12
[2025-07-27 14:46:11] Starting ATLAS job with PandaID=6747411037
[2025-07-27 14:46:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:07:24]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:07:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/d6/log.45743349._048316.job.log.tgz.1
[2025-07-27 16:07:24]  workdir=None
[2025-07-27 16:07:24] ]
[2025-07-27 16:07:24] 2025-07-27 20:06:45,110 | INFO     | transferring file log.45743349._048316.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747411037/log.45743349._048316.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:07:24] 2025-07-27 20:06:45,110 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747411037/log.45743349._048316.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._048316.job
[2025-07-27 16:07:24] 2025-07-27 20:06:45,133 | INFO     | adding to output.list: log.45743349._048316.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/d6/log.45743349._048316.job.log.tg
[2025-07-27 16:07:24] 2025-07-27 20:06:45,134 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:07:24] 2025-07-27 20:06:45,134 | INFO     | summary of transferred files:
[2025-07-27 16:07:24] 2025-07-27 20:06:45,134 | INFO     |  -- lfn=log.45743349._048316.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:07:24] 2025-07-27 20:06:45,134 | INFO     | stage-out finished correctly
[2025-07-27 16:07:24] 2025-07-27 20:06:45,351 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:07:24] 2025-07-27 20:06:46,173 | INFO     | job 6747411037 has state=finished
[2025-07-27 16:07:24] 2025-07-27 20:06:46,173 | INFO     | preparing for final server update for job 6747411037 in state='finished'
[2025-07-27 16:07:24] 2025-07-27 20:06:46,244 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 16:07:24] 2025-07-27 20:06:46,245 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:07:24] 2025-07-27 20:06:46,245 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:07:24] 2025-07-27 20:06:46,245 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:07:24] 2025-07-27 20:06:46,245 | INFO     | job 6747411037 has finished - writing final server update
[2025-07-27 16:07:24] 2025-07-27 20:06:46,246 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:07:24] 2025-07-27 20:06:46,246 | INFO     | executing command: lscpu
[2025-07-27 16:07:24] 2025-07-27 20:06:46,305 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:07:24] 2025-07-27 20:06:49,673 | WARNING  | process 103893 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:07:24] 2025-07-27 20:06:49,673 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411037/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:07:24] 2025-07-27 20:06:49,675 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411037/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:07:24] 2025-07-27 20:06:49,676 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3956114 B
[2025-07-27 16:07:24] 2025-07-27 20:06:49,676 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15305 B
[2025-07-27 16:07:24] 2025-07-27 20:06:49,676 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,300 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:07:24] 2025-07-27 20:06:51,310 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2658.214464285715
[2025-07-27 16:07:24] 2025-07-27 20:06:51,320 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747411037/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,321 | INFO     | extracted standard info from prmon json
[2025-07-27 16:07:24] 2025-07-27 20:06:51,321 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:07:24] 2025-07-27 20:06:51,321 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:07:24] 2025-07-27 20:06:51,322 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:07:24] 2025-07-27 20:06:51,322 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:07:24] 2025-07-27 20:06:51,324 | INFO     | sufficient remaining disk space (76429656064 B)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,325 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,326 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6747411037: 4279095 B (within 2537553920 B limit)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,325 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:07:24] 2025-07-27 20:06:51,326 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6747411037/HITS.45743349._048316.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,327 | INFO     | sum of square deviations: 115715658.0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,327 | INFO     | total size of present files: 0 B (workdir size: 4279095 B)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,328 | INFO     | sum of deviations: -10505432993.0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,328 | INFO     | mean x: 1753644480.5
[2025-07-27 16:07:24] 2025-07-27 20:06:51,328 | INFO     | mean y: 2516400.222222222
[2025-07-27 16:07:24] 2025-07-27 20:06:51,329 | INFO     | -- intersect: 159209964224.06854
[2025-07-27 16:07:24] 2025-07-27 20:06:51,329 | INFO     | intersect: 159209964224.06854
[2025-07-27 16:07:24] 2025-07-27 20:06:51,329 | INFO     | chi2: 0.22411013305017252
[2025-07-27 16:07:24] 2025-07-27 20:06:51,328 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6747411037/HITS.45743349._048316.pool.root.1 since it does not exist
[2025-07-27 16:07:24] 2025-07-27 20:06:51,329 | INFO     | -- intersect: 159209964224.06854
[2025-07-27 16:07:24] 2025-07-27 20:06:51,330 | INFO     | current memory leak: -90.79 B/s (using 72 data points, chi2=0.22)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,330 | INFO     | could have reported an average CPU frequency of 2654 MHz (6 samples)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,330 | INFO     | ..............................
[2025-07-27 16:07:24] 2025-07-27 20:06:51,330 | INFO     | . Timing measurements:
[2025-07-27 16:07:24] 2025-07-27 20:06:51,330 | INFO     | . get job = 0 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | . initial setup = 2 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | . payload setup = 7 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | . stage-in = 0 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | . payload execution = 4795 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | . stage-out = 0 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | . log creation = 0 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,331 | INFO     | ..............................
[2025-07-27 16:07:24] 2025-07-27 20:06:51,522 | INFO     | 
[2025-07-27 16:07:24] 2025-07-27 20:06:51,522 | INFO     | job summary report
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | --------------------------------------------------
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | PanDA job id: 6747411037
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | task id: 45743349
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | errors: (none)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | pilot state: finished 
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | transexitcode: 0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | exeerrorcode: 0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | exeerrordiag: 
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | exitcode: 0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,523 | INFO     | exitmsg: OK
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | cpuconsumptiontime: 51220 s
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | nevents: 400
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | neventsw: 0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | pid: 103893
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | pgrp: 103893
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | corecount: 12
[2025-07-27 16:07:24] 2025-07-27 20:06:51,524 | INFO     | event service: False
[2025-07-27 16:07:24] 2025-07-27 20:06:51,525 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 4805: 2423951, 4806: 2432949, 4807: 2433133, 4813: 2433355}
[2025-07-27 16:07:24] 2025-07-27 20:06:51,525 | INFO     | --------------------------------------------------
[2025-07-27 16:07:24] 2025-07-27 20:06:51,525 | INFO     | 
[2025-07-27 16:07:24] 2025-07-27 20:06:51,525 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:07:24] 2025-07-27 20:06:51,549 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,550 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,551 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,551 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:07:24] 2025-07-27 20:06:51,551 | INFO     | job 6747411037 has completed (purged errors)
[2025-07-27 16:07:24] 2025-07-27 20:06:51,551 | INFO     | overall cleanup function is called
[2025-07-27 16:07:24] 2025-07-27 20:06:51,770 | INFO     | number of running child processes to parent process 103893: 1
[2025-07-27 16:07:24] 2025-07-27 20:06:51,771 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:07:24] 2025-07-27 20:06:51,771 | INFO     | aborting job monitoring since job object (job id=6747411037) has expired
[2025-07-27 16:07:24] 2025-07-27 20:06:52,563 | INFO     | --- collectZombieJob: --- 10, [103893]
[2025-07-27 16:07:24] 2025-07-27 20:06:52,563 | INFO     | zombie collector waiting for pid 103893
[2025-07-27 16:07:24] 2025-07-27 20:06:52,563 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:07:24] 2025-07-27 20:06:52,564 | INFO     | collected zombie processes
[2025-07-27 16:07:24] 2025-07-27 20:06:52,564 | INFO     | will attempt to kill all subprocesses of pid=103893
[2025-07-27 16:07:24] 2025-07-27 20:06:52,970 | INFO     | process IDs to be killed: [103893] (in reverse order)
[2025-07-27 16:07:24] 2025-07-27 20:06:53,075 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:07:24] 2025-07-27 20:06:53,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:07:24] 2025-07-27 20:06:53,087 | INFO     | did not find any defunct processes belonging to 103893
[2025-07-27 16:07:24] 2025-07-27 20:06:53,098 | INFO     | did not find any defunct processes belonging to 103893
[2025-07-27 16:07:24] 2025-07-27 20:06:53,099 | INFO     | ready for new job
[2025-07-27 16:07:24] 2025-07-27 20:06:53,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:07:24] 2025-07-27 20:06:53,101 | INFO     | ***************************************
[2025-07-27 16:07:24] 2025-07-27 20:06:53,101 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:07:24] 2025-07-27 20:06:53,101 | INFO     | ***************************************
[2025-07-27 16:07:24] 2025-07-27 20:06:53,101 | INFO     | 
[2025-07-27 16:07:24] 2025-07-27 20:06:53,117 | INFO     | architecture information:
[2025-07-27 16:07:24] 2025-07-27 20:06:53,118 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:07:24] 2025-07-27 20:06:53,135 | INFO     | cat /etc/os-release:
[2025-07-27 16:07:24] NAME="CentOS Linux"
[2025-07-27 16:07:24] VERSION="7 (Core)"
[2025-07-27 16:07:24] ID="centos"
[2025-07-27 16:07:24] ID_LIKE="rhel fedora"
[2025-07-27 16:07:24] VERSION_ID="7"
[2025-07-27 16:07:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:07:24] ANSI_COLOR="0;31"
[2025-07-27 16:07:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:07:24] HOME_URL="https://www.centos.org/"
[2025-07-27 16:07:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:07:24] 
[2025-07-27 16:07:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:07:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:07:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:07:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:07:24] 
[2025-07-27 16:07:24] 2025-07-27 20:06:53,135 | INFO     | ***************************************
[2025-07-27 16:07:24] 2025-07-27 20:06:53,638 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:07:24] 2025-07-27 20:06:53,657 | INFO     | sufficient remaining disk space (76433850368 B)
[2025-07-27 16:07:24] 2025-07-27 20:06:53,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:07:24] 2025-07-27 20:06:53,658 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:07:24] 2025-07-27 20:06:53,658 | INFO     | update_server=False
[2025-07-27 16:07:24] 2025-07-27 20:06:53,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:07:24] 2025-07-27 20:06:53,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:07:24] 2025-07-27 20:06:53,659 | INFO     | aborting loop
[2025-07-27 16:07:24] 2025-07-27 20:06:53,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:07:24] 2025-07-27 20:06:53,973 | INFO     | all data control threads have been joined
[2025-07-27 16:07:24] 2025-07-27 20:06:54,551 | INFO     | all payload control threads have been joined
[2025-07-27 16:07:24] 2025-07-27 20:06:54,663 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:54,664 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:54,798 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:54,978 | INFO     | [data] control thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,077 | INFO     | all job control threads have been joined
[2025-07-27 16:07:24] 2025-07-27 20:06:55,248 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,445 | INFO     | [job] validate thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,556 | INFO     | [payload] control thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,610 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,612 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,665 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,880 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:55,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:07:24] 2025-07-27 20:06:56,032 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:56,082 | INFO     | [job] control thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:56,444 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:07:24] 2025-07-27 20:06:57,449 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:06:59,976 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:07:04,674 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:07:24] 2025-07-27 20:07:05,680 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:07:24] 2025-07-27 20:07:05,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139745011918656)>', '<ExcThread(monitor, started 139744520423168)>']
[2025-07-27 16:07:24] 2025-07-27 20:07:10,857 | INFO     | all workflow threads have been joined
[2025-07-27 16:07:24] 2025-07-27 20:07:10,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:07:24] 2025-07-27 20:07:10,858 | INFO     | traces error code: 0
[2025-07-27 16:07:24] 2025-07-27 20:07:10,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:07:24] 2025-07-27 20:07:23,645 | INFO     | PID=97067 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 16:07:24] 2025-07-27 20:07:23,645 | INFO     | .. there are 10 such processes running
[2025-07-27 16:07:24] 2025-07-27 20:07:23,646 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:07:24] 2025-07-27 20:07:23,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:07:24] 2025-07-27 20:07:23,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:07:24] 2025-07-27 20:07:23,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:07:24] 2025-07-27 20:07:23,647 | INFO     | [monitor] control thread has ended
[2025-07-27 16:07:24] 2025-07-27 20:07:23,920 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:07:24] 2025-07-27 20:07:23,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:07:24] 2025-07-27 20:07:23,929 [wrapper] pilotpid: 97067
[2025-07-27 16:07:24] 2025-07-27 20:07:23,932 [wrapper] Pilot exit status: 0
[2025-07-27 16:07:24] 2025-07-27 20:07:23,946 [wrapper] pandaids: 6747411037
[2025-07-27 16:07:24] 2025-07-27 20:07:24,017 [wrapper] cleanup supervisor_pilot  395513 97068
[2025-07-27 16:07:24] 2025-07-27 20:07:24,021 [wrapper] Test setup, not cleaning
[2025-07-27 16:07:24] 2025-07-27 20:07:24,025 [wrapper] apfmon messages muted
[2025-07-27 16:07:24] 2025-07-27 20:07:24,030 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:07:24] 2025-07-27 20:07:24,033 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:07:24]  *** Error codes and diagnostics ***
[2025-07-27 16:07:24]     "exeErrorCode": 0,
[2025-07-27 16:07:24]     "exeErrorDiag": "",
[2025-07-27 16:07:24]     "pilotErrorCode": 0,
[2025-07-27 16:07:24]     "pilotErrorDiag": "",
[2025-07-27 16:07:24]  *** Listing of results directory ***
[2025-07-27 16:07:24] total 358588
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:59 pilot3.tar.gz
[2025-07-27 16:07:24] -rwx------. 1 boincer umatlas     36292 Jul 27 08:24 runpilot2-wrapper.sh
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 08:24 queuedata.json
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas       100 Jul 27 14:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:07:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 14:46 run_atlas
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas       105 Jul 27 14:46 job.xml
[2025-07-27 16:07:24] -rw-r--r--. 2 boincer umatlas 146932689 Jul 27 14:46 EVNT.45743347._002677.pool.root.1
[2025-07-27 16:07:24] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 14:46 shared
[2025-07-27 16:07:24] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 14:46 input.tar.gz
[2025-07-27 16:07:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:46 start_atlas.sh
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas         0 Jul 27 14:46 boinc_lockfile
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 14:46 pandaJob.out
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas    980125 Jul 27 14:46 agis_schedconf.cvmfs.json
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas   1593052 Jul 27 14:46 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:07:24] drwx------. 4 boincer umatlas      4096 Jul 27 14:46 pilot3
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 16:03 init_data.xml
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:06 boinc_task_state.xml
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas 214709968 Jul 27 16:06 HITS.45743349._048316.pool.root.1
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas      1039 Jul 27 16:06 memory_monitor_summary.json
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas    358967 Jul 27 16:06 log.45743349._048316.job.log.tgz.1
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas      7827 Jul 27 16:06 heartbeat.json
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:07 boinc_mmap_file
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:07 wrapper_checkpoint.txt
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas        95 Jul 27 16:07 pilot_heartbeat.json
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas       821 Jul 27 16:07 pilotlog.txt
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas    477892 Jul 27 16:07 log.45743349._048316.job.log.1
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas       357 Jul 27 16:07 output.list
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:07 runtime_log
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas    860160 Jul 27 16:07 result.tar.gz
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas       654 Jul 27 16:07 wu5LDmQbF07n9Rq4apOajLDm4fhM0noT9bVof3QYDmAY2KDmZOth5m.diag
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 16:07 runtime_log.err
[2025-07-27 16:07:24] -rw-r--r--. 1 boincer umatlas     22571 Jul 27 16:07 stderr.txt
[2025-07-27 16:07:24] HITS file was successfully produced:
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas 214709968 Jul 27 16:06 shared/HITS.pool.root.1
[2025-07-27 16:07:24]  *** Contents of shared directory: ***
[2025-07-27 16:07:24] total 354564
[2025-07-27 16:07:24] -rw-r--r--. 2 boincer umatlas 146932689 Jul 27 14:46 ATLAS.root_0
[2025-07-27 16:07:24] -rw-r--r--. 2 boincer umatlas    542895 Jul 27 14:46 input.tar.gz
[2025-07-27 16:07:24] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:46 start_atlas.sh
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas 214709968 Jul 27 16:06 HITS.pool.root.1
[2025-07-27 16:07:24] -rw-------. 1 boincer umatlas    860160 Jul 27 16:07 result.tar.gz
16:07:25 (93471): run_atlas exited; CPU time 51286.480937
16:07:25 (93471): called boinc_finish(0)

</stderr_txt>
]]>

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