Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:30:22 (43804): wrapper (7.7.26015): starting
13:30:22 (43804): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 13:30:22] Arguments: --nthreads 8
[2025-07-27 13:30:22] Threads: 8
[2025-07-27 13:30:22] Checking for CVMFS
[2025-07-27 13:30:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:30:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:30:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:30:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:30:22] 2.11.2.0 39542 213820 376436 148819 2 57 14228075 18432000 3665 130560 0 178805995 99.355 268842844 40342 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 13:30:22] CVMFS is ok
[2025-07-27 13:30:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:30:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:30:22] Further information can be found at the LHC@home message board.
[2025-07-27 13:30:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:30:22] Checking for apptainer binary...
[2025-07-27 13:30:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:30:22] Running /usr/bin/apptainer --version
[2025-07-27 13:30:23] apptainer version 1.3.2-1.el7
[2025-07-27 13:30:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:30:23] c-211-25.aglt2.org
[2025-07-27 13:30:23] apptainer works
[2025-07-27 13:30:23] Set ATHENA_PROC_NUMBER=8
[2025-07-27 13:30:23] Set ATHENA_CORE_NUMBER=8
[2025-07-27 13:30:23] Starting ATLAS job with PandaID=6746501888
[2025-07-27 13:30:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:24:13]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:24:13] 2025-07-27 22:23:36,225 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:24:13] 2025-07-27 22:23:37,516 | INFO     | monitor loop #1248: job 0:6746501888 is in state 'finished'
[2025-07-27 18:24:13] 2025-07-27 22:23:37,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,796 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 18:24:13] 2025-07-27 22:23:39,801 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9472750000004
[2025-07-27 18:24:13] 2025-07-27 22:23:39,806 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6746501888/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,806 | INFO     | extracted standard info from prmon json
[2025-07-27 18:24:13] 2025-07-27 22:23:39,806 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:24:13] 2025-07-27 22:23:39,807 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:24:13] 2025-07-27 22:23:39,807 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:24:13] 2025-07-27 22:23:39,807 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:24:13] 2025-07-27 22:23:39,811 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:24:13] 2025-07-27 22:23:39,811 | INFO     | sum of square deviations: 7407141672.0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,813 | INFO     | sum of deviations: 6233337002.500003
[2025-07-27 18:24:13] 2025-07-27 22:23:39,813 | INFO     | mean x: 1753646214.5
[2025-07-27 18:24:13] 2025-07-27 22:23:39,813 | INFO     | mean y: 2492700.829861111
[2025-07-27 18:24:13] 2025-07-27 22:23:39,813 | INFO     | -- intersect: -1473254398.6832783
[2025-07-27 18:24:13] 2025-07-27 22:23:39,813 | INFO     | intersect: -1473254398.6832783
[2025-07-27 18:24:13] 2025-07-27 22:23:39,814 | INFO     | chi2: 1.502513072358356
[2025-07-27 18:24:13] 2025-07-27 22:23:39,814 | INFO     | sum of square deviations: 7028008982.0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,816 | INFO     | sum of deviations: 6152909692.000006
[2025-07-27 18:24:13] 2025-07-27 22:23:39,816 | INFO     | mean x: 1753646062.0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,816 | INFO     | mean y: 2492668.51590106
[2025-07-27 18:24:13] 2025-07-27 22:23:39,816 | INFO     | -- intersect: -1532796469.396792
[2025-07-27 18:24:13] 2025-07-27 22:23:39,816 | INFO     | intersect: -1532796469.396792
[2025-07-27 18:24:13] 2025-07-27 22:23:39,817 | INFO     | chi2: 1.5027153120604857
[2025-07-27 18:24:13] 2025-07-27 22:23:39,817 | INFO     | current chi2=1.5027153120604857 (change=-0.013460096011830312 %)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,817 | INFO     | right removable region: 282
[2025-07-27 18:24:13] 2025-07-27 22:23:39,817 | INFO     | sum of square deviations: 7028008982.0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | sum of deviations: -34139458615.999996
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | mean x: 1753646367.0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | mean y: 2508802.261484099
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | -- intersect: 8521071844.316407
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | intersect: 8521071844.316407
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | chi2: 0.17343220319688832
[2025-07-27 18:24:13] 2025-07-27 22:23:39,819 | INFO     | current chi2=0.17343220319688832 (change=88.45719172847743 %)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,820 | INFO     | sum of square deviations: 6662039329.5
[2025-07-27 18:24:13] 2025-07-27 22:23:39,821 | INFO     | sum of deviations: -36301894219.99999
[2025-07-27 18:24:13] 2025-07-27 22:23:39,821 | INFO     | mean x: 1753646519.5
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | mean y: 2509689.6258992804
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | -- intersect: 9558245899.1475
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | intersect: 9558245899.1475
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | chi2: 0.1571659442475254
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | current chi2=0.1571659442475254 (change=9.379030335500445 %)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | left removable region: 20
[2025-07-27 18:24:13] 2025-07-27 22:23:39,822 | INFO     | sum of square deviations: 5576683165.5
[2025-07-27 18:24:13] 2025-07-27 22:23:39,824 | INFO     | sum of deviations: -18748537910.49999
[2025-07-27 18:24:13] 2025-07-27 22:23:39,824 | INFO     | mean x: 1753646641.5
[2025-07-27 18:24:13] 2025-07-27 22:23:39,824 | INFO     | mean y: 2502286.36259542
[2025-07-27 18:24:13] 2025-07-27 22:23:39,824 | INFO     | -- intersect: 5898177110.276659
[2025-07-27 18:24:13] 2025-07-27 22:23:39,824 | INFO     | intersect: 5898177110.276659
[2025-07-27 18:24:13] 2025-07-27 22:23:39,825 | INFO     | chi2: 0.11282922070496015
[2025-07-27 18:24:13] 2025-07-27 22:23:39,825 | INFO     | -- intersect: 5898177110.276659
[2025-07-27 18:24:13] 2025-07-27 22:23:39,825 | INFO     | current memory leak: -3.36 B/s (using 262 data points, chi2=0.11)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,825 | INFO     | could have reported an average CPU frequency of 2899 MHz (13 samples)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,825 | INFO     | ..............................
[2025-07-27 18:24:13] 2025-07-27 22:23:39,825 | INFO     | . Timing measurements:
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . get job = 0 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . initial setup = 2 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . payload setup = 6 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . stage-in = 0 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . payload execution = 17551 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . stage-out = 2 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | . log creation = 0 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,826 | INFO     | ..............................
[2025-07-27 18:24:13] 2025-07-27 22:23:39,898 | INFO     | 
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | job summary report
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | --------------------------------------------------
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | PanDA job id: 6746501888
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | task id: 45759964
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | errors: (none)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | pilot state: finished 
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | transexitcode: 0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | exeerrorcode: 0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,899 | INFO     | exeerrordiag: 
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | exitcode: 0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | exitmsg: OK
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | cpuconsumptiontime: 134192 s
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | nevents: 400
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | neventsw: 0
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | pid: 5209
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | pgrp: 5209
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | corecount: 8
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | event service: False
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | sizes: {0: 2397249, 1: 2397504, 5: 2397766, 12: 2397822, 17561: 2429777, 17564: 2438775, 17565: 2438959, 17570: 2439153}
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | --------------------------------------------------
[2025-07-27 18:24:13] 2025-07-27 22:23:39,900 | INFO     | 
[2025-07-27 18:24:13] 2025-07-27 22:23:39,901 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-27 18:24:13] 2025-07-27 22:23:39,915 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,916 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,917 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:24:13] 2025-07-27 22:23:39,918 | INFO     | job 6746501888 has completed (purged errors)
[2025-07-27 18:24:13] 2025-07-27 22:23:39,918 | INFO     | overall cleanup function is called
[2025-07-27 18:24:13] 2025-07-27 22:23:40,924 | INFO     | --- collectZombieJob: --- 10, [5209]
[2025-07-27 18:24:13] 2025-07-27 22:23:40,925 | INFO     | zombie collector waiting for pid 5209
[2025-07-27 18:24:13] 2025-07-27 22:23:40,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:24:13] 2025-07-27 22:23:40,925 | INFO     | collected zombie processes
[2025-07-27 18:24:13] 2025-07-27 22:23:40,925 | INFO     | will attempt to kill all subprocesses of pid=5209
[2025-07-27 18:24:13] 2025-07-27 22:23:41,170 | INFO     | process IDs to be killed: [5209] (in reverse order)
[2025-07-27 18:24:13] 2025-07-27 22:23:41,232 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:24:13] 2025-07-27 22:23:41,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:24:13] 2025-07-27 22:23:41,241 | INFO     | did not find any defunct processes belonging to 5209
[2025-07-27 18:24:13] 2025-07-27 22:23:41,248 | INFO     | did not find any defunct processes belonging to 5209
[2025-07-27 18:24:13] 2025-07-27 22:23:41,248 | INFO     | ready for new job
[2025-07-27 18:24:13] 2025-07-27 22:23:41,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:24:13] 2025-07-27 22:23:41,250 | INFO     | ***************************************
[2025-07-27 18:24:13] 2025-07-27 22:23:41,251 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:24:13] 2025-07-27 22:23:41,251 | INFO     | ***************************************
[2025-07-27 18:24:13] 2025-07-27 22:23:41,251 | INFO     | 
[2025-07-27 18:24:13] 2025-07-27 22:23:41,253 | INFO     | architecture information:
[2025-07-27 18:24:13] 2025-07-27 22:23:41,254 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:24:13] 2025-07-27 22:23:41,273 | INFO     | cat /etc/os-release:
[2025-07-27 18:24:13] NAME="CentOS Linux"
[2025-07-27 18:24:13] VERSION="7 (Core)"
[2025-07-27 18:24:13] ID="centos"
[2025-07-27 18:24:13] ID_LIKE="rhel fedora"
[2025-07-27 18:24:13] VERSION_ID="7"
[2025-07-27 18:24:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:24:13] ANSI_COLOR="0;31"
[2025-07-27 18:24:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:24:13] HOME_URL="https://www.centos.org/"
[2025-07-27 18:24:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:24:13] 
[2025-07-27 18:24:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:24:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:24:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:24:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:24:13] 
[2025-07-27 18:24:13] 2025-07-27 22:23:41,273 | INFO     | ***************************************
[2025-07-27 18:24:13] 2025-07-27 22:23:41,776 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-27 18:24:13] 2025-07-27 22:23:41,803 | INFO     | sufficient remaining disk space (55295606784 B)
[2025-07-27 18:24:13] 2025-07-27 22:23:41,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:24:13] 2025-07-27 22:23:41,803 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:24:13] 2025-07-27 22:23:41,803 | INFO     | update_server=False
[2025-07-27 18:24:13] 2025-07-27 22:23:41,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:24:13] 2025-07-27 22:23:41,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:24:13] 2025-07-27 22:23:41,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:24:13] 2025-07-27 22:23:41,804 | INFO     | aborting loop
[2025-07-27 18:24:13] 2025-07-27 22:23:42,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:24:13] 2025-07-27 22:23:42,202 | INFO     | all payload control threads have been joined
[2025-07-27 18:24:13] 2025-07-27 22:23:42,377 | INFO     | all data control threads have been joined
[2025-07-27 18:24:13] 2025-07-27 22:23:42,810 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:42,810 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:42,811 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:42,921 | INFO     | all job control threads have been joined
[2025-07-27 18:24:13] 2025-07-27 22:23:42,957 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:43,065 | INFO     | [job] validate thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:43,208 | INFO     | [payload] control thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:43,383 | INFO     | [data] control thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:43,579 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:43,806 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:43,928 | INFO     | [job] control thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:44,049 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:44,077 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:44,142 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:44,143 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:45,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:24:13] 2025-07-27 22:23:49,047 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:52,320 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:24:13] 2025-07-27 22:23:53,326 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:24:13] 2025-07-27 22:23:54,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196955858752)>', '<ExcThread(monitor, started 140196372797184)>']
[2025-07-27 18:24:13] 2025-07-27 22:23:59,091 | INFO     | all workflow threads have been joined
[2025-07-27 18:24:13] 2025-07-27 22:23:59,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:24:13] 2025-07-27 22:23:59,092 | INFO     | traces error code: 0
[2025-07-27 18:24:13] 2025-07-27 22:23:59,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:24:13] 2025-07-27 22:24:12,777 | INFO     | PID=47437 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 18:24:13] 2025-07-27 22:24:12,777 | INFO     | .. there are 5 such processes running
[2025-07-27 18:24:13] 2025-07-27 22:24:12,778 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:24:13] 2025-07-27 22:24:12,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:24:13] 2025-07-27 22:24:12,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:24:13] 2025-07-27 22:24:12,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:24:13] 2025-07-27 22:24:12,778 | INFO     | [monitor] control thread has ended
[2025-07-27 18:24:13] 2025-07-27 22:24:12,900 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:24:13] 2025-07-27 22:24:12,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:24:13] 2025-07-27 22:24:12,905 [wrapper] pilotpid: 47437
[2025-07-27 18:24:13] 2025-07-27 22:24:12,907 [wrapper] Pilot exit status: 0
[2025-07-27 18:24:13] 2025-07-27 22:24:12,916 [wrapper] pandaids: 6746501888
[2025-07-27 18:24:13] 2025-07-27 22:24:12,950 [wrapper] cleanup supervisor_pilot 19993 47438
[2025-07-27 18:24:13] 2025-07-27 22:24:12,953 [wrapper] Test setup, not cleaning
[2025-07-27 18:24:13] 2025-07-27 22:24:12,955 [wrapper] apfmon messages muted
[2025-07-27 18:24:13] 2025-07-27 22:24:12,958 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:24:13] 2025-07-27 22:24:12,960 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:24:13]  *** Error codes and diagnostics ***
[2025-07-27 18:24:13]     "exeErrorCode": 0,
[2025-07-27 18:24:13]     "exeErrorDiag": "",
[2025-07-27 18:24:13]     "pilotErrorCode": 0,
[2025-07-27 18:24:13]     "pilotErrorDiag": "",
[2025-07-27 18:24:13]  *** Listing of results directory ***
[2025-07-27 18:24:13] total 376644
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 03:44 pilot3.tar.gz
[2025-07-27 18:24:13] -rwx------ 1 boincer umatlas     36292 Jul 27 03:59 runpilot2-wrapper.sh
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 03:59 queuedata.json
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas       100 Jul 27 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:24:13] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 13:30 run_atlas
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas       105 Jul 27 13:30 job.xml
[2025-07-27 18:24:13] -rw-r--r-- 2 boincer umatlas 217125531 Jul 27 13:30 EVNT.45759962._000001.pool.root.1
[2025-07-27 18:24:13] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 13:30 start_atlas.sh
[2025-07-27 18:24:13] drwxrwx--x 2 boincer umatlas      4096 Jul 27 13:30 shared
[2025-07-27 18:24:13] -rw-r--r-- 2 boincer umatlas    542883 Jul 27 13:30 input.tar.gz
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas         0 Jul 27 13:30 boinc_lockfile
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas      2568 Jul 27 13:30 pandaJob.out
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas    980117 Jul 27 13:30 agis_schedconf.cvmfs.json
[2025-07-27 18:24:13] drwx------ 4 boincer umatlas      4096 Jul 27 13:30 pilot3
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas      6036 Jul 27 18:19 init_data.xml
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas 160681456 Jul 27 18:22 HITS.45759964._000020.pool.root.1
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas        95 Jul 27 18:23 pilot_heartbeat.json
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas       531 Jul 27 18:23 boinc_task_state.xml
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas      1051 Jul 27 18:23 memory_monitor_summary.json
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas   1593052 Jul 27 18:23 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas    437357 Jul 27 18:23 log.45759964._000020.job.log.tgz.1
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas        29 Jul 27 18:23 wrapper_checkpoint.txt
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 18:23 boinc_mmap_file
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas      7835 Jul 27 18:23 heartbeat.json
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas       820 Jul 27 18:24 pilotlog.txt
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas   1563635 Jul 27 18:24 log.45759964._000020.job.log.1
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas       357 Jul 27 18:24 output.list
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas       620 Jul 27 18:24 runtime_log
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas   2017280 Jul 27 18:24 result.tar.gz
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas      8661 Jul 27 18:24 runtime_log.err
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas       662 Jul 27 18:24 qHGMDm1SB07n9Rq4apOajLDm4fhM0noT9bVof3QYDmnD2KDmEOzoen.diag
[2025-07-27 18:24:13] -rw-r--r-- 1 boincer umatlas     21214 Jul 27 18:24 stderr.txt
[2025-07-27 18:24:13] HITS file was successfully produced:
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas 160681456 Jul 27 18:22 shared/HITS.pool.root.1
[2025-07-27 18:24:13]  *** Contents of shared directory: ***
[2025-07-27 18:24:13] total 371484
[2025-07-27 18:24:13] -rw-r--r-- 2 boincer umatlas 217125531 Jul 27 13:30 ATLAS.root_0
[2025-07-27 18:24:13] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 13:30 start_atlas.sh
[2025-07-27 18:24:13] -rw-r--r-- 2 boincer umatlas    542883 Jul 27 13:30 input.tar.gz
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas 160681456 Jul 27 18:22 HITS.pool.root.1
[2025-07-27 18:24:13] -rw------- 1 boincer umatlas   2017280 Jul 27 18:24 result.tar.gz
18:24:14 (43804): run_atlas exited; CPU time 134602.363511
18:24:14 (43804): called boinc_finish(0)

</stderr_txt>
]]>

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