Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:51:43 (3387698): wrapper (7.7.26015): starting
14:51:43 (3387698): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 14:51:43] Arguments: --nthreads 12
[2025-07-27 14:51:43] Threads: 12
[2025-07-27 14:51:43] Checking for CVMFS
[2025-07-27 14:51:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 14:51:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 14:51:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 14:51:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 14:51:44] 2.12.6.0 2624825 18747 326388 148821 1 147 29938430 40960000 8519 16776704 0 57733414 99.787 51448640 31383 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 14:51:44] CVMFS is ok
[2025-07-27 14:51:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 14:51:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 14:51:44] Further information can be found at the LHC@home message board.
[2025-07-27 14:51:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 14:51:44] Checking for apptainer binary...
[2025-07-27 14:51:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 14:51:44] Running /usr/bin/apptainer --version
[2025-07-27 14:51:44] apptainer version 1.4.1-1.el9
[2025-07-27 14:51:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 14:51:44] c6-8-12-1.aglt2.org
[2025-07-27 14:51:44] apptainer works
[2025-07-27 14:51:44] Set ATHENA_PROC_NUMBER=12
[2025-07-27 14:51:44] Set ATHENA_CORE_NUMBER=12
[2025-07-27 14:51:44] Starting ATLAS job with PandaID=6746818020
[2025-07-27 14:51:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:14:02]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:14:02]  mtime=0
[2025-07-27 16:14:02]  protocol_id=None
[2025-07-27 16:14:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:14:02]  replicas=None
[2025-07-27 16:14:02]  scope=mc23_13p6TeV
[2025-07-27 16:14:02]  status=None
[2025-07-27 16:14:02]  status_code=0
[2025-07-27 16:14:02]  storage_token=
[2025-07-27 16:14:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746818020/log.45758813._000005.job.log.tgz.1
[2025-07-27 16:14:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/4a/log.45758813._000005.job.log.tgz.1
[2025-07-27 16:14:02]  workdir=None
[2025-07-27 16:14:02] ]
[2025-07-27 16:14:02] 2025-07-27 20:13:21,558 | INFO     | transferring file log.45758813._000005.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746818020/log.45758813._000005.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 16:14:02] 2025-07-27 20:13:21,558 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746818020/log.45758813._000005.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758813._000005.job
[2025-07-27 16:14:02] 2025-07-27 20:13:21,581 | INFO     | adding to output.list: log.45758813._000005.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/66/4a/log.45758813._000005.job.log.tg
[2025-07-27 16:14:02] 2025-07-27 20:13:21,582 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:14:02] 2025-07-27 20:13:21,582 | INFO     | summary of transferred files:
[2025-07-27 16:14:02] 2025-07-27 20:13:21,582 | INFO     |  -- lfn=log.45758813._000005.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:14:02] 2025-07-27 20:13:21,583 | INFO     | stage-out finished correctly
[2025-07-27 16:14:02] 2025-07-27 20:13:22,721 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:14:02] 2025-07-27 20:13:24,152 | INFO     | job 6746818020 has state=finished
[2025-07-27 16:14:02] 2025-07-27 20:13:24,153 | INFO     | preparing for final server update for job 6746818020 in state='finished'
[2025-07-27 16:14:02] 2025-07-27 20:13:24,155 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:14:02] 2025-07-27 20:13:24,155 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:14:02] 2025-07-27 20:13:24,155 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:14:02] 2025-07-27 20:13:24,156 | INFO     | job 6746818020 has finished - writing final server update
[2025-07-27 16:14:02] 2025-07-27 20:13:24,156 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:14:02] 2025-07-27 20:13:24,158 | INFO     | executing command: lscpu
[2025-07-27 16:14:02] 2025-07-27 20:13:24,232 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:14:02] 2025-07-27 20:13:26,474 | WARNING  | process 3400402 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:14:02] 2025-07-27 20:13:26,475 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746818020/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:14:02] 2025-07-27 20:13:26,769 | INFO     | number of running child processes to parent process 3400402: 1
[2025-07-27 16:14:02] 2025-07-27 20:13:26,769 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:14:02] 2025-07-27 20:13:29,130 | INFO     | PID=3392487 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 16:14:02] 2025-07-27 20:13:29,130 | INFO     | .. there are 12 such processes running
[2025-07-27 16:14:02] 2025-07-27 20:13:29,272 | INFO     | monitor loop #355: job 0:6746818020 is in state 'finished'
[2025-07-27 16:14:02] 2025-07-27 20:13:29,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,810 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:14:02] 2025-07-27 20:13:29,819 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2733.1143928571432
[2025-07-27 16:14:02] 2025-07-27 20:13:29,828 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746818020/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,829 | INFO     | extracted standard info from prmon json
[2025-07-27 16:14:02] 2025-07-27 20:13:29,829 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:14:02] 2025-07-27 20:13:29,829 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:14:02] 2025-07-27 20:13:29,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:14:02] 2025-07-27 20:13:29,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:14:02] 2025-07-27 20:13:29,832 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:14:02] 2025-07-27 20:13:29,832 | INFO     | sum of square deviations: 120605052.0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,832 | INFO     | sum of deviations: -7687992931.0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | mean x: 1753644849.0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | mean y: 2480287.1506849313
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | -- intersect: 111788918574.96437
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | intersect: 111788918574.96437
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | chi2: 0.12705300459015492
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | -- intersect: 111788918574.96437
[2025-07-27 16:14:02] 2025-07-27 20:13:29,833 | INFO     | current memory leak: -63.75 B/s (using 73 data points, chi2=0.13)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | could have reported an average CPU frequency of 2700 MHz (6 samples)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | ..............................
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . Timing measurements:
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . get job = 0 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . initial setup = 2 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . payload setup = 8 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . stage-in = 0 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . payload execution = 4854 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . stage-out = 1 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | . log creation = 0 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,834 | INFO     | ..............................
[2025-07-27 16:14:02] 2025-07-27 20:13:29,942 | INFO     | 
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | job summary report
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | --------------------------------------------------
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | PanDA job id: 6746818020
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | task id: 45758813
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | errors: (none)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | pilot state: finished 
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | transexitcode: 0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,943 | INFO     | exeerrorcode: 0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | exeerrordiag: 
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | exitcode: 0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | exitmsg: OK
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | cpuconsumptiontime: 49549 s
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | nevents: 400
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | neventsw: 0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | pid: 3400402
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | pgrp: 3400402
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | corecount: 12
[2025-07-27 16:14:02] 2025-07-27 20:13:29,944 | INFO     | event service: False
[2025-07-27 16:14:02] 2025-07-27 20:13:29,945 | INFO     | sizes: {0: 2397459, 6: 2397721, 11: 2397749, 4866: 2423874, 4868: 2432872, 4869: 2432928, 4876: 2433250}
[2025-07-27 16:14:02] 2025-07-27 20:13:29,945 | INFO     | --------------------------------------------------
[2025-07-27 16:14:02] 2025-07-27 20:13:29,945 | INFO     | 
[2025-07-27 16:14:02] 2025-07-27 20:13:29,945 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 16:14:02] 2025-07-27 20:13:29,968 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | job 6746818020 has completed (purged errors)
[2025-07-27 16:14:02] 2025-07-27 20:13:29,970 | INFO     | overall cleanup function is called
[2025-07-27 16:14:02] 2025-07-27 20:13:30,979 | INFO     | --- collectZombieJob: --- 10, [3400402]
[2025-07-27 16:14:02] 2025-07-27 20:13:30,980 | INFO     | zombie collector waiting for pid 3400402
[2025-07-27 16:14:02] 2025-07-27 20:13:30,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:14:02] 2025-07-27 20:13:30,980 | INFO     | collected zombie processes
[2025-07-27 16:14:02] 2025-07-27 20:13:30,980 | INFO     | will attempt to kill all subprocesses of pid=3400402
[2025-07-27 16:14:02] 2025-07-27 20:13:31,365 | INFO     | process IDs to be killed: [3400402] (in reverse order)
[2025-07-27 16:14:02] 2025-07-27 20:13:31,478 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:14:02] 2025-07-27 20:13:31,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:14:02] 2025-07-27 20:13:31,491 | INFO     | did not find any defunct processes belonging to 3400402
[2025-07-27 16:14:02] 2025-07-27 20:13:31,503 | INFO     | did not find any defunct processes belonging to 3400402
[2025-07-27 16:14:02] 2025-07-27 20:13:31,504 | INFO     | ready for new job
[2025-07-27 16:14:02] 2025-07-27 20:13:31,504 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:14:02] 2025-07-27 20:13:31,507 | INFO     | ***************************************
[2025-07-27 16:14:02] 2025-07-27 20:13:31,507 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:14:02] 2025-07-27 20:13:31,507 | INFO     | ***************************************
[2025-07-27 16:14:02] 2025-07-27 20:13:31,507 | INFO     | 
[2025-07-27 16:14:02] 2025-07-27 20:13:31,524 | INFO     | architecture information:
[2025-07-27 16:14:02] 2025-07-27 20:13:31,524 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:14:02] 2025-07-27 20:13:31,540 | INFO     | cat /etc/os-release:
[2025-07-27 16:14:02] NAME="CentOS Linux"
[2025-07-27 16:14:02] VERSION="7 (Core)"
[2025-07-27 16:14:02] ID="centos"
[2025-07-27 16:14:02] ID_LIKE="rhel fedora"
[2025-07-27 16:14:02] VERSION_ID="7"
[2025-07-27 16:14:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:14:02] ANSI_COLOR="0;31"
[2025-07-27 16:14:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:14:02] HOME_URL="https://www.centos.org/"
[2025-07-27 16:14:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:14:02] 
[2025-07-27 16:14:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:14:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:14:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:14:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:14:02] 
[2025-07-27 16:14:02] 2025-07-27 20:13:31,541 | INFO     | ***************************************
[2025-07-27 16:14:02] 2025-07-27 20:13:32,043 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 16:14:02] 2025-07-27 20:13:32,067 | INFO     | sufficient remaining disk space (58588135424 B)
[2025-07-27 16:14:02] 2025-07-27 20:13:32,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:14:02] 2025-07-27 20:13:32,068 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:14:02] 2025-07-27 20:13:32,068 | INFO     | update_server=False
[2025-07-27 16:14:02] 2025-07-27 20:13:32,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:14:02] 2025-07-27 20:13:32,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:14:02] 2025-07-27 20:13:32,319 | INFO     | all payload control threads have been joined
[2025-07-27 16:14:02] 2025-07-27 20:13:32,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:14:02] 2025-07-27 20:13:32,782 | INFO     | aborting loop
[2025-07-27 16:14:02] 2025-07-27 20:13:32,929 | INFO     | all data control threads have been joined
[2025-07-27 16:14:02] 2025-07-27 20:13:33,074 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:33,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:14:02] 2025-07-27 20:13:33,324 | INFO     | [payload] control thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:33,373 | INFO     | all job control threads have been joined
[2025-07-27 16:14:02] 2025-07-27 20:13:33,475 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:33,788 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:33,824 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:33,930 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:33,934 | INFO     | [data] control thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,203 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,207 | INFO     | [job] validate thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,378 | INFO     | [job] control thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,389 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,391 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,515 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,516 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:34,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:14:02] 2025-07-27 20:13:35,960 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:37,326 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:14:02] 2025-07-27 20:13:39,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140458172663616)>', '<ExcThread(monitor, started 140457677928192)>']
[2025-07-27 16:14:02] 2025-07-27 20:13:44,122 | INFO     | all workflow threads have been joined
[2025-07-27 16:14:02] 2025-07-27 20:13:44,123 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:14:02] 2025-07-27 20:13:44,123 | INFO     | traces error code: 0
[2025-07-27 16:14:02] 2025-07-27 20:13:44,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:14:02] 2025-07-27 20:14:01,631 | INFO     | PID=3392487 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:14:02] 2025-07-27 20:14:01,634 | INFO     | .. there are 12 such processes running
[2025-07-27 16:14:02] 2025-07-27 20:14:01,636 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:14:02] 2025-07-27 20:14:01,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:14:02] 2025-07-27 20:14:01,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:14:02] 2025-07-27 20:14:01,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:14:02] 2025-07-27 20:14:01,637 | INFO     | [monitor] control thread has ended
[2025-07-27 16:14:02] 2025-07-27 20:14:01,893 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:14:02] 2025-07-27 20:14:01,897 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:14:02] 2025-07-27 20:14:01,901 [wrapper] pilotpid: 3392487
[2025-07-27 16:14:02] 2025-07-27 20:14:01,907 [wrapper] Pilot exit status: 0
[2025-07-27 16:14:02] 2025-07-27 20:14:01,921 [wrapper] pandaids: 6746818020
[2025-07-27 16:14:02] 2025-07-27 20:14:02,013 [wrapper] cleanup supervisor_pilot 3701793 3392488
[2025-07-27 16:14:02] 2025-07-27 20:14:02,017 [wrapper] Test setup, not cleaning
[2025-07-27 16:14:02] 2025-07-27 20:14:02,022 [wrapper] apfmon messages muted
[2025-07-27 16:14:02] 2025-07-27 20:14:02,027 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:14:02] 2025-07-27 20:14:02,032 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:14:02]  *** Error codes and diagnostics ***
[2025-07-27 16:14:02]     "exeErrorCode": 0,
[2025-07-27 16:14:02]     "exeErrorDiag": "",
[2025-07-27 16:14:02]     "pilotErrorCode": 0,
[2025-07-27 16:14:02]     "pilotErrorDiag": "",
[2025-07-27 16:14:02]  *** Listing of results directory ***
[2025-07-27 16:14:02] total 407896
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 05:06 pilot3.tar.gz
[2025-07-27 16:14:02] -rwx------. 1 boincer umatlas     36292 Jul 27 05:14 runpilot2-wrapper.sh
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:14 queuedata.json
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas       100 Jul 27 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:14:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 14:51 run_atlas
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas       105 Jul 27 14:51 job.xml
[2025-07-27 16:14:02] -rw-r--r--. 2 boincer umatlas 240761941 Jul 27 14:51 EVNT.45758811._000001.pool.root.1
[2025-07-27 16:14:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:51 start_atlas.sh
[2025-07-27 16:14:02] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 14:51 shared
[2025-07-27 16:14:02] -rw-r--r--. 2 boincer umatlas    542866 Jul 27 14:51 input.tar.gz
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas         0 Jul 27 14:51 boinc_lockfile
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas      2555 Jul 27 14:51 pandaJob.out
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas    980125 Jul 27 14:51 agis_schedconf.cvmfs.json
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas   1593052 Jul 27 14:51 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:14:02] drwx------. 4 boincer umatlas      4096 Jul 27 14:51 pilot3
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 16:10 init_data.xml
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas 171373191 Jul 27 16:12 HITS.45758813._000005.pool.root.1
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas       529 Jul 27 16:12 boinc_task_state.xml
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas      1038 Jul 27 16:13 memory_monitor_summary.json
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas    359495 Jul 27 16:13 log.45758813._000005.job.log.tgz.1
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas      7811 Jul 27 16:13 heartbeat.json
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas        27 Jul 27 16:13 wrapper_checkpoint.txt
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 16:13 boinc_mmap_file
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas        95 Jul 27 16:14 pilot_heartbeat.json
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas       823 Jul 27 16:14 pilotlog.txt
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas    476969 Jul 27 16:14 log.45758813._000005.job.log.1
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas       357 Jul 27 16:14 output.list
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas       620 Jul 27 16:14 runtime_log
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas    860160 Jul 27 16:14 result.tar.gz
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas       654 Jul 27 16:14 XczKDm8dC07n9Rq4apOajLDm4fhM0noT9bVof3QYDmUJ2KDmGUL0Qn.diag
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 16:14 runtime_log.err
[2025-07-27 16:14:02] -rw-r--r--. 1 boincer umatlas     21835 Jul 27 16:14 stderr.txt
[2025-07-27 16:14:02] HITS file was successfully produced:
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas 171373191 Jul 27 16:12 shared/HITS.pool.root.1
[2025-07-27 16:14:02]  *** Contents of shared directory: ***
[2025-07-27 16:14:02] total 403872
[2025-07-27 16:14:02] -rw-r--r--. 2 boincer umatlas 240761941 Jul 27 14:51 ATLAS.root_0
[2025-07-27 16:14:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 14:51 start_atlas.sh
[2025-07-27 16:14:02] -rw-r--r--. 2 boincer umatlas    542866 Jul 27 14:51 input.tar.gz
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas 171373191 Jul 27 16:12 HITS.pool.root.1
[2025-07-27 16:14:02] -rw-------. 1 boincer umatlas    860160 Jul 27 16:14 result.tar.gz
16:14:04 (3387698): run_atlas exited; CPU time 49630.793484
16:14:04 (3387698): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN