Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:22:18 (3603882): wrapper (7.7.26015): starting
13:22:18 (3603882): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 13:22:18] Arguments: --nthreads 8
[2025-07-27 13:22:18] Threads: 8
[2025-07-27 13:22:18] Checking for CVMFS
[2025-07-27 13:22:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:22:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:22:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:22:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:22:18] 2.12.6.0 3576101 18657 375604 148819 0 292 39715142 40960001 14682 16776704 0 61311994 99.868 66535376 24781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:22:18] CVMFS is ok
[2025-07-27 13:22:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:22:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:22:18] Further information can be found at the LHC@home message board.
[2025-07-27 13:22:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:22:18] Checking for apptainer binary...
[2025-07-27 13:22:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:22:18] Running /usr/bin/apptainer --version
[2025-07-27 13:22:18] apptainer version 1.4.1-1.el9
[2025-07-27 13:22:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:22:19] c7-11-12.aglt2.org
[2025-07-27 13:22:19] apptainer works
[2025-07-27 13:22:19] Set ATHENA_PROC_NUMBER=8
[2025-07-27 13:22:19] Set ATHENA_CORE_NUMBER=8
[2025-07-27 13:22:19] Starting ATLAS job with PandaID=6747410877
[2025-07-27 13:22:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:52:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:52:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 14:52:31]  replicas=None
[2025-07-27 14:52:31]  scope=mc23_13p6TeV
[2025-07-27 14:52:31]  status=None
[2025-07-27 14:52:31]  status_code=0
[2025-07-27 14:52:31]  storage_token=
[2025-07-27 14:52:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747410877/log.45743349._048156.job.log.tgz.1
[2025-07-27 14:52:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/07/log.45743349._048156.job.log.tgz.1
[2025-07-27 14:52:31]  workdir=None
[2025-07-27 14:52:31] ]
[2025-07-27 14:52:31] 2025-07-27 18:51:48,776 | INFO     | transferring file log.45743349._048156.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747410877/log.45743349._048156.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:52:31] 2025-07-27 18:51:48,776 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747410877/log.45743349._048156.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._048156.job
[2025-07-27 14:52:31] 2025-07-27 18:51:48,797 | INFO     | adding to output.list: log.45743349._048156.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/07/log.45743349._048156.job.log.tg
[2025-07-27 14:52:31] 2025-07-27 18:51:48,798 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:52:31] 2025-07-27 18:51:48,798 | INFO     | summary of transferred files:
[2025-07-27 14:52:31] 2025-07-27 18:51:48,798 | INFO     |  -- lfn=log.45743349._048156.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:52:31] 2025-07-27 18:51:48,798 | INFO     | stage-out finished correctly
[2025-07-27 14:52:31] 2025-07-27 18:51:50,533 | INFO     | monitor loop #396: job 0:6747410877 is in state 'finished'
[2025-07-27 14:52:31] 2025-07-27 18:51:50,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:52:31] 2025-07-27 18:51:51,532 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:52:31] 2025-07-27 18:51:53,043 | INFO     | monitor loop #397: job 0:6747410877 is in state 'finished'
[2025-07-27 14:52:31] 2025-07-27 18:51:53,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:52:31] 2025-07-27 18:51:53,122 | INFO     | job 6747410877 has state=finished
[2025-07-27 14:52:31] 2025-07-27 18:51:53,123 | INFO     | preparing for final server update for job 6747410877 in state='finished'
[2025-07-27 14:52:31] 2025-07-27 18:51:53,180 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 14:52:31] 2025-07-27 18:51:53,181 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:52:31] 2025-07-27 18:51:53,181 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:52:31] 2025-07-27 18:51:53,181 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:52:31] 2025-07-27 18:51:53,181 | INFO     | job 6747410877 has finished - writing final server update
[2025-07-27 14:52:31] 2025-07-27 18:51:53,181 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:52:31] 2025-07-27 18:51:53,182 | INFO     | executing command: lscpu
[2025-07-27 14:52:31] 2025-07-27 18:51:53,248 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:52:31] 2025-07-27 18:51:55,548 | INFO     | monitor loop #398: job 0:6747410877 is in state 'finished'
[2025-07-27 14:52:31] 2025-07-27 18:51:55,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,051 | INFO     | monitor loop #399: job 0:6747410877 is in state 'finished'
[2025-07-27 14:52:31] 2025-07-27 18:51:58,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,649 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 14:52:31] 2025-07-27 18:51:58,653 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3257.8990781250004
[2025-07-27 14:52:31] 2025-07-27 18:51:58,663 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747410877/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,664 | INFO     | extracted standard info from prmon json
[2025-07-27 14:52:31] 2025-07-27 18:51:58,664 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:52:31] 2025-07-27 18:51:58,664 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:52:31] 2025-07-27 18:51:58,664 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:52:31] 2025-07-27 18:51:58,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:52:31] 2025-07-27 18:51:58,666 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:52:31] 2025-07-27 18:51:58,666 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | sum of deviations: -17132017200.999998
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | mean x: 1753639730.0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | mean y: 2340552.3827160494
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | -- intersect: 182342191610.84818
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | intersect: 182342191610.84818
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | chi2: 0.13827576742875117
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | -- intersect: 182342191610.84818
[2025-07-27 14:52:31] 2025-07-27 18:51:58,667 | INFO     | current memory leak: -103.98 B/s (using 81 data points, chi2=0.14)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,668 | INFO     | could have reported an average CPU frequency of 3261 MHz (6 samples)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,668 | INFO     | ..............................
[2025-07-27 14:52:31] 2025-07-27 18:51:58,668 | INFO     | . Timing measurements:
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . get job = 0 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . initial setup = 2 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . payload setup = 9 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . stage-in = 0 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . payload execution = 5325 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . stage-out = 0 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | . log creation = 0 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,669 | INFO     | ..............................
[2025-07-27 14:52:31] 2025-07-27 18:51:58,736 | INFO     | 
[2025-07-27 14:52:31] 2025-07-27 18:51:58,736 | INFO     | job summary report
[2025-07-27 14:52:31] 2025-07-27 18:51:58,736 | INFO     | --------------------------------------------------
[2025-07-27 14:52:31] 2025-07-27 18:51:58,736 | INFO     | PanDA job id: 6747410877
[2025-07-27 14:52:31] 2025-07-27 18:51:58,736 | INFO     | task id: 45743349
[2025-07-27 14:52:31] 2025-07-27 18:51:58,736 | INFO     | errors: (none)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | pilot state: finished 
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | transexitcode: 0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | exeerrorcode: 0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | exeerrordiag: 
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | exitcode: 0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | exitmsg: OK
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | cpuconsumptiontime: 38323 s
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | nevents: 400
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | neventsw: 0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | pid: 3615933
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | pgrp: 3615933
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | corecount: 8
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | event service: False
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | sizes: {0: 2397474, 6: 2397736, 11: 2397764, 5338: 2424198, 5339: 2433196, 5342: 2433252, 5349: 2433574}
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | --------------------------------------------------
[2025-07-27 14:52:31] 2025-07-27 18:51:58,737 | INFO     | 
[2025-07-27 14:52:31] 2025-07-27 18:51:58,738 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 14:52:31] 2025-07-27 18:51:58,755 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,756 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:52:31] 2025-07-27 18:51:58,757 | INFO     | job 6747410877 has completed (purged errors)
[2025-07-27 14:52:31] 2025-07-27 18:51:58,757 | INFO     | overall cleanup function is called
[2025-07-27 14:52:31] 2025-07-27 18:51:59,765 | INFO     | --- collectZombieJob: --- 10, [3615933]
[2025-07-27 14:52:31] 2025-07-27 18:51:59,765 | INFO     | zombie collector waiting for pid 3615933
[2025-07-27 14:52:31] 2025-07-27 18:51:59,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:52:31] 2025-07-27 18:51:59,766 | INFO     | collected zombie processes
[2025-07-27 14:52:31] 2025-07-27 18:51:59,766 | INFO     | will attempt to kill all subprocesses of pid=3615933
[2025-07-27 14:52:31] 2025-07-27 18:52:00,056 | INFO     | process IDs to be killed: [3615933] (in reverse order)
[2025-07-27 14:52:31] 2025-07-27 18:52:00,174 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:52:31] 2025-07-27 18:52:00,174 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:52:31] 2025-07-27 18:52:00,189 | INFO     | did not find any defunct processes belonging to 3615933
[2025-07-27 14:52:31] 2025-07-27 18:52:00,199 | INFO     | did not find any defunct processes belonging to 3615933
[2025-07-27 14:52:31] 2025-07-27 18:52:00,199 | INFO     | ready for new job
[2025-07-27 14:52:31] 2025-07-27 18:52:00,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:52:31] 2025-07-27 18:52:00,200 | INFO     | ***************************************
[2025-07-27 14:52:31] 2025-07-27 18:52:00,200 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:52:31] 2025-07-27 18:52:00,200 | INFO     | ***************************************
[2025-07-27 14:52:31] 2025-07-27 18:52:00,200 | INFO     | 
[2025-07-27 14:52:31] 2025-07-27 18:52:00,216 | INFO     | architecture information:
[2025-07-27 14:52:31] 2025-07-27 18:52:00,216 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:52:31] 2025-07-27 18:52:00,233 | INFO     | cat /etc/os-release:
[2025-07-27 14:52:31] NAME="CentOS Linux"
[2025-07-27 14:52:31] VERSION="7 (Core)"
[2025-07-27 14:52:31] ID="centos"
[2025-07-27 14:52:31] ID_LIKE="rhel fedora"
[2025-07-27 14:52:31] VERSION_ID="7"
[2025-07-27 14:52:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:52:31] ANSI_COLOR="0;31"
[2025-07-27 14:52:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:52:31] HOME_URL="https://www.centos.org/"
[2025-07-27 14:52:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:52:31] 
[2025-07-27 14:52:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:52:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:52:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:52:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:52:31] 
[2025-07-27 14:52:31] 2025-07-27 18:52:00,233 | INFO     | ***************************************
[2025-07-27 14:52:31] 2025-07-27 18:52:00,737 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 14:52:31] 2025-07-27 18:52:00,759 | INFO     | sufficient remaining disk space (85843771392 B)
[2025-07-27 14:52:31] 2025-07-27 18:52:00,760 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:52:31] 2025-07-27 18:52:00,763 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:52:31] 2025-07-27 18:52:00,763 | INFO     | update_server=False
[2025-07-27 14:52:31] 2025-07-27 18:52:00,763 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:52:31] 2025-07-27 18:52:01,383 | INFO     | all data control threads have been joined
[2025-07-27 14:52:31] 2025-07-27 18:52:01,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:52:31] 2025-07-27 18:52:01,561 | INFO     | aborting loop
[2025-07-27 14:52:31] 2025-07-27 18:52:01,608 | INFO     | all job control threads have been joined
[2025-07-27 14:52:31] 2025-07-27 18:52:01,769 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:01,835 | INFO     | all payload control threads have been joined
[2025-07-27 14:52:31] 2025-07-27 18:52:01,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:52:31] 2025-07-27 18:52:01,987 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:52:31] 2025-07-27 18:52:02,207 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,269 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,352 | INFO     | [job] validate thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,388 | INFO     | [data] control thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,411 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,566 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,613 | INFO     | [job] control thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,654 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:02,840 | INFO     | [payload] control thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:03,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:03,182 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:03,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:52:31] 2025-07-27 18:52:03,896 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:04,753 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:06,126 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:52:31] 2025-07-27 18:52:07,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509919557440)>', '<ExcThread(monitor, started 140509435647744)>']
[2025-07-27 14:52:31] 2025-07-27 18:52:12,149 | INFO     | all workflow threads have been joined
[2025-07-27 14:52:31] 2025-07-27 18:52:12,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:52:31] 2025-07-27 18:52:12,149 | INFO     | traces error code: 0
[2025-07-27 14:52:31] 2025-07-27 18:52:12,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:52:31] 2025-07-27 18:52:29,398 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-27 14:52:31] 2025-07-27 18:52:31,656 | INFO     | PID=3607483 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:52:31] 2025-07-27 18:52:31,657 | INFO     | .. there are 19 such processes running
[2025-07-27 14:52:31] 2025-07-27 18:52:31,657 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:52:31] 2025-07-27 18:52:31,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:52:31] 2025-07-27 18:52:31,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:52:31] 2025-07-27 18:52:31,658 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:52:31] 2025-07-27 18:52:31,658 | INFO     | [monitor] control thread has ended
[2025-07-27 14:52:31] 2025-07-27 18:52:31,769 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:52:31] 2025-07-27 18:52:31,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:52:31] 2025-07-27 18:52:31,778 [wrapper] pilotpid: 3607483
[2025-07-27 14:52:31] 2025-07-27 18:52:31,782 [wrapper] Pilot exit status: 0
[2025-07-27 14:52:31] 2025-07-27 18:52:31,801 [wrapper] pandaids: 6747410877
[2025-07-27 14:52:31] 2025-07-27 18:52:31,880 [wrapper] cleanup supervisor_pilot 3927000 3607484
[2025-07-27 14:52:31] 2025-07-27 18:52:31,885 [wrapper] Test setup, not cleaning
[2025-07-27 14:52:31] 2025-07-27 18:52:31,889 [wrapper] apfmon messages muted
[2025-07-27 14:52:31] 2025-07-27 18:52:31,893 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:52:31] 2025-07-27 18:52:31,897 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:52:31]  *** Error codes and diagnostics ***
[2025-07-27 14:52:31]     "exeErrorCode": 0,
[2025-07-27 14:52:31]     "exeErrorDiag": "",
[2025-07-27 14:52:31]     "pilotErrorCode": 0,
[2025-07-27 14:52:31]     "pilotErrorDiag": "",
[2025-07-27 14:52:31]  *** Listing of results directory ***
[2025-07-27 14:52:31] total 437704
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:59 pilot3.tar.gz
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 08:13 queuedata.json
[2025-07-27 14:52:31] -rwx------. 1 boincer umatlas     36292 Jul 27 08:14 runpilot2-wrapper.sh
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:52:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:22 run_atlas
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:22 job.xml
[2025-07-27 14:52:31] -rw-r--r--. 2 boincer umatlas 228586849 Jul 27 13:22 EVNT.45743347._002667.pool.root.1
[2025-07-27 14:52:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:22 shared
[2025-07-27 14:52:31] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 13:22 input.tar.gz
[2025-07-27 14:52:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:22 start_atlas.sh
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:22 boinc_lockfile
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 13:22 pandaJob.out
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas    980117 Jul 27 13:22 agis_schedconf.cvmfs.json
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:22 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:52:31] drwx------. 4 boincer umatlas      4096 Jul 27 13:22 pilot3
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas      6897 Jul 27 14:46 init_data.xml
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas       529 Jul 27 14:51 boinc_task_state.xml
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas 214075963 Jul 27 14:51 HITS.45743349._048156.pool.root.1
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas      1028 Jul 27 14:51 memory_monitor_summary.json
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas    308971 Jul 27 14:51 log.45743349._048156.job.log.tgz.1
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas      7775 Jul 27 14:51 heartbeat.json
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:52 boinc_mmap_file
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:52 wrapper_checkpoint.txt
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas        95 Jul 27 14:52 pilot_heartbeat.json
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas       823 Jul 27 14:52 pilotlog.txt
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas    524380 Jul 27 14:52 log.45743349._048156.job.log.1
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas       357 Jul 27 14:52 output.list
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:52 runtime_log
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas    849920 Jul 27 14:52 result.tar.gz
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 14:52 runtime_log.err
[2025-07-27 14:52:31] -rw-------. 1 boincer umatlas       652 Jul 27 14:52 p9rMDmHSF07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0DVLDmnjxMyn.diag
[2025-07-27 14:52:31] -rw-r--r--. 1 boincer umatlas     21916 Jul 27 14:52 stderr.txt
[2025-07-27 14:52:32] HITS file was successfully produced:
[2025-07-27 14:52:32] -rw-------. 1 boincer umatlas 214075963 Jul 27 14:51 shared/HITS.pool.root.1
[2025-07-27 14:52:32]  *** Contents of shared directory: ***
[2025-07-27 14:52:32] total 433680
[2025-07-27 14:52:32] -rw-r--r--. 2 boincer umatlas 228586849 Jul 27 13:22 ATLAS.root_0
[2025-07-27 14:52:32] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 13:22 input.tar.gz
[2025-07-27 14:52:32] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:22 start_atlas.sh
[2025-07-27 14:52:32] -rw-------. 1 boincer umatlas 214075963 Jul 27 14:51 HITS.pool.root.1
[2025-07-27 14:52:32] -rw-------. 1 boincer umatlas    849920 Jul 27 14:52 result.tar.gz
14:52:33 (3603882): run_atlas exited; CPU time 38385.518233
14:52:33 (3603882): called boinc_finish(0)

</stderr_txt>
]]>

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