Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:51:38 (1120590): wrapper (7.7.26015): starting
09:51:38 (1120590): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 09:51:38] Arguments: --nthreads 4
[2025-07-28 09:51:38] Threads: 4
[2025-07-28 09:51:38] Checking for CVMFS
[2025-07-28 09:51:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 09:51:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 09:51:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 09:51:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 09:51:38] 2.9.2.0 3706633 5248 97232 148840 0 57 35928533 36864000 0 130560 0 4186326 99.991 184529 2108 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 09:51:38] CVMFS is ok
[2025-07-28 09:51:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 09:51:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 09:51:38] Further information can be found at the LHC@home message board.
[2025-07-28 09:51:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 09:51:38] Checking for apptainer binary...
[2025-07-28 09:51:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 09:51:38] Running /usr/bin/apptainer --version
[2025-07-28 09:51:38] apptainer version 1.4.1-1.1
[2025-07-28 09:51:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 09:51:38] thA309
[2025-07-28 09:51:38] apptainer works
[2025-07-28 09:51:38] Set ATHENA_PROC_NUMBER=4
[2025-07-28 09:51:38] Set ATHENA_CORE_NUMBER=4
[2025-07-28 09:51:38] Starting ATLAS job with PandaID=6746473057
[2025-07-28 09:51:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 11:24:36]  *** The last 200 lines of the pilot log: ***
[2025-07-28 11:24:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 11:24:36]  replicas=None
[2025-07-28 11:24:36]  scope=mc23_13p6TeV
[2025-07-28 11:24:36]  status=None
[2025-07-28 11:24:36]  status_code=0
[2025-07-28 11:24:36]  storage_token=
[2025-07-28 11:24:36]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6746473057/log.45759781._000017.job.log.tgz.1
[2025-07-28 11:24:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/5b/log.45759781._000017.job.log.tgz.1
[2025-07-28 11:24:36]  workdir=None
[2025-07-28 11:24:36] ]
[2025-07-28 11:24:36] 2025-07-28 09:23:54,676 | INFO     | transferring file log.45759781._000017.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6746473057/log.45759781._000017.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 11:24:36] 2025-07-28 09:23:54,676 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6746473057/log.45759781._000017.job.log.tgz.1 /local/data/boinc/slots/0/log.45759781._0000
[2025-07-28 11:24:36] 2025-07-28 09:23:54,696 | INFO     | adding to output.list: log.45759781._000017.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/5b/log.45759781._000017.job.log.tg
[2025-07-28 11:24:36] 2025-07-28 09:23:54,696 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 11:24:36] 2025-07-28 09:23:54,697 | INFO     | summary of transferred files:
[2025-07-28 11:24:36] 2025-07-28 09:23:54,697 | INFO     |  -- lfn=log.45759781._000017.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 11:24:36] 2025-07-28 09:23:54,697 | INFO     | stage-out finished correctly
[2025-07-28 11:24:36] 2025-07-28 09:23:55,841 | WARNING  | process 1130940 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 11:24:36] 2025-07-28 09:23:55,841 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6746473057/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 11:24:36] 2025-07-28 09:23:55,887 | INFO     | number of running child processes to parent process 1130940: 1
[2025-07-28 11:24:36] 2025-07-28 09:23:55,887 | INFO     | maximum number of monitored processes: 6
[2025-07-28 11:24:36] 2025-07-28 09:23:57,858 | INFO     | PID=1124309 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 11:24:36] 2025-07-28 09:23:57,949 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 11:24:36] 2025-07-28 09:23:58,391 | INFO     | monitor loop #424: job 0:6746473057 is in state 'finished'
[2025-07-28 11:24:36] 2025-07-28 09:23:58,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 11:24:36] 2025-07-28 09:23:59,910 | INFO     | job 6746473057 has state=finished
[2025-07-28 11:24:36] 2025-07-28 09:23:59,910 | INFO     | preparing for final server update for job 6746473057 in state='finished'
[2025-07-28 11:24:36] 2025-07-28 09:23:59,911 | INFO     | this job has now completed (state=finished)
[2025-07-28 11:24:36] 2025-07-28 09:23:59,911 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 11:24:36] 2025-07-28 09:23:59,911 | INFO     | log transfer has been attempted: DONE
[2025-07-28 11:24:36] 2025-07-28 09:23:59,911 | INFO     | job 6746473057 has finished - writing final server update
[2025-07-28 11:24:36] 2025-07-28 09:23:59,911 | INFO     | total number of processed events: 400 (read)
[2025-07-28 11:24:36] 2025-07-28 09:23:59,912 | INFO     | executing command: lscpu
[2025-07-28 11:24:36] 2025-07-28 09:23:59,934 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 11:24:36] 2025-07-28 09:24:00,895 | INFO     | monitor loop #425: job 0:6746473057 is in state 'finished'
[2025-07-28 11:24:36] 2025-07-28 09:24:00,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,372 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 11:24:36] 2025-07-28 09:24:03,374 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3370.391375
[2025-07-28 11:24:36] 2025-07-28 09:24:03,376 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6746473057/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,376 | INFO     | extracted standard info from prmon json
[2025-07-28 11:24:36] 2025-07-28 09:24:03,376 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 11:24:36] 2025-07-28 09:24:03,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 11:24:36] 2025-07-28 09:24:03,376 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 11:24:36] 2025-07-28 09:24:03,376 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | fitting pss+swap vs Time
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | sum of square deviations: 183761585.0
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | sum of deviations: -10477045392.499996
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | mean x: 1753691966.5
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | mean y: 2467899.869047619
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | -- intersect: 99988057039.63992
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | intersect: 99988057039.63992
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | chi2: 0.08867351838868624
[2025-07-28 11:24:36] 2025-07-28 09:24:03,377 | INFO     | -- intersect: 99988057039.63992
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | current memory leak: -57.01 B/s (using 84 data points, chi2=0.09)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | could have reported an average CPU frequency of 3763 MHz (7 samples)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | ..............................
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . Timing measurements:
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . get job = 0 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . initial setup = 1 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . payload setup = 5 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . stage-in = 0 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . payload execution = 5505 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . stage-out = 0 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | . log creation = 0 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,378 | INFO     | ..............................
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | 
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | job summary report
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | --------------------------------------------------
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | PanDA job id: 6746473057
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | task id: 45759781
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | errors: (none)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | pilot state: finished 
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | transexitcode: 0
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | exeerrorcode: 0
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | exeerrordiag: 
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | exitcode: 0
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | exitmsg: OK
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | cpuconsumptiontime: 21067 s
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | nevents: 400
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | neventsw: 0
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | pid: 1130940
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | pgrp: 1130940
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | corecount: 4
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | event service: False
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | sizes: {0: 2397470, 4: 2397732, 11: 2397760, 5514: 2424509, 5515: 2433513, 5518: 2433569, 5523: 2433891}
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | --------------------------------------------------
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | 
[2025-07-28 11:24:36] 2025-07-28 09:24:03,686 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 11:24:36] 2025-07-28 09:24:03,707 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,707 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,707 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,707 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | job 6746473057 has completed (purged errors)
[2025-07-28 11:24:36] 2025-07-28 09:24:03,708 | INFO     | overall cleanup function is called
[2025-07-28 11:24:36] 2025-07-28 09:24:04,715 | INFO     | --- collectZombieJob: --- 10, [1130940]
[2025-07-28 11:24:36] 2025-07-28 09:24:04,715 | INFO     | zombie collector waiting for pid 1130940
[2025-07-28 11:24:36] 2025-07-28 09:24:04,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 11:24:36] 2025-07-28 09:24:04,716 | INFO     | collected zombie processes
[2025-07-28 11:24:36] 2025-07-28 09:24:04,716 | INFO     | will attempt to kill all subprocesses of pid=1130940
[2025-07-28 11:24:36] 2025-07-28 09:24:04,767 | INFO     | process IDs to be killed: [1130940] (in reverse order)
[2025-07-28 11:24:36] 2025-07-28 09:24:04,802 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 11:24:36] 2025-07-28 09:24:04,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 11:24:36] 2025-07-28 09:24:04,804 | INFO     | did not find any defunct processes belonging to 1130940
[2025-07-28 11:24:36] 2025-07-28 09:24:04,805 | INFO     | did not find any defunct processes belonging to 1130940
[2025-07-28 11:24:36] 2025-07-28 09:24:04,805 | INFO     | ready for new job
[2025-07-28 11:24:36] 2025-07-28 09:24:04,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 11:24:36] 2025-07-28 09:24:04,806 | INFO     | ***************************************
[2025-07-28 11:24:36] 2025-07-28 09:24:04,806 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 11:24:36] 2025-07-28 09:24:04,806 | INFO     | ***************************************
[2025-07-28 11:24:36] 2025-07-28 09:24:04,806 | INFO     | 
[2025-07-28 11:24:36] 2025-07-28 09:24:04,807 | INFO     | architecture information:
[2025-07-28 11:24:36] 2025-07-28 09:24:04,807 | INFO     | executing command: cat /etc/os-release
[2025-07-28 11:24:36] 2025-07-28 09:24:04,821 | INFO     | cat /etc/os-release:
[2025-07-28 11:24:36] NAME="CentOS Linux"
[2025-07-28 11:24:36] VERSION="7 (Core)"
[2025-07-28 11:24:36] ID="centos"
[2025-07-28 11:24:36] ID_LIKE="rhel fedora"
[2025-07-28 11:24:36] VERSION_ID="7"
[2025-07-28 11:24:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 11:24:36] ANSI_COLOR="0;31"
[2025-07-28 11:24:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 11:24:36] HOME_URL="https://www.centos.org/"
[2025-07-28 11:24:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 11:24:36] 
[2025-07-28 11:24:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 11:24:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 11:24:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 11:24:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 11:24:36] 
[2025-07-28 11:24:36] 2025-07-28 09:24:04,821 | INFO     | ***************************************
[2025-07-28 11:24:36] 2025-07-28 09:24:05,325 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | INFO     | sufficient remaining disk space (219643117568 B)
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | INFO     | update_server=False
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 11:24:36] 2025-07-28 09:24:05,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 11:24:36] 2025-07-28 09:24:05,344 | INFO     | aborting loop
[2025-07-28 11:24:36] 2025-07-28 09:24:05,446 | INFO     | all payload control threads have been joined
[2025-07-28 11:24:36] 2025-07-28 09:24:05,765 | INFO     | all data control threads have been joined
[2025-07-28 11:24:36] 2025-07-28 09:24:06,055 | INFO     | all job control threads have been joined
[2025-07-28 11:24:36] 2025-07-28 09:24:06,349 | INFO     | [job] retrieve thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:06,349 | INFO     | [job] queue monitor thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:06,349 | INFO     | [job] job monitor thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:06,432 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:06,451 | INFO     | [payload] control thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:06,546 | INFO     | [payload] validate_post thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:06,771 | INFO     | [data] control thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,019 | INFO     | [data] copytool_in thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,061 | INFO     | [job] control thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,307 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,350 | INFO     | [data] copytool_out thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,457 | INFO     | [payload] failed_post thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,758 | INFO     | [job] validate thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:07,802 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:08,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 11:24:36] 2025-07-28 09:24:12,510 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:15,777 | INFO     | job.realtimelogging is not enabled
[2025-07-28 11:24:36] 2025-07-28 09:24:16,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 11:24:36] 2025-07-28 09:24:17,417 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099245131584)>', '<ExcThread(monitor, started 140098435786496)>']
[2025-07-28 11:24:36] 2025-07-28 09:24:22,443 | INFO     | all workflow threads have been joined
[2025-07-28 11:24:36] 2025-07-28 09:24:22,443 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 11:24:36] 2025-07-28 09:24:22,444 | INFO     | traces error code: 0
[2025-07-28 11:24:36] 2025-07-28 09:24:22,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 11:24:36] 2025-07-28 09:24:36,014 | INFO     | PID=1124309 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 11:24:36] 2025-07-28 09:24:36,015 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 11:24:36] 2025-07-28 09:24:36,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 11:24:36] 2025-07-28 09:24:36,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 11:24:36] 2025-07-28 09:24:36,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 11:24:36] 2025-07-28 09:24:36,015 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 11:24:36] 2025-07-28 09:24:36,015 | INFO     | [monitor] control thread has ended
[2025-07-28 11:24:36] 2025-07-28 09:24:36,094 [wrapper] ==== pilot stdout END ====
[2025-07-28 11:24:36] 2025-07-28 09:24:36,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 11:24:36] 2025-07-28 09:24:36,102 [wrapper] pilotpid: 1124309
[2025-07-28 11:24:36] 2025-07-28 09:24:36,106 [wrapper] Pilot exit status: 0
[2025-07-28 11:24:36] 2025-07-28 09:24:36,117 [wrapper] pandaids: 6746473057
[2025-07-28 11:24:36] 2025-07-28 09:24:36,141 [wrapper] cleanup supervisor_pilot 1143694 1124310
[2025-07-28 11:24:36] 2025-07-28 09:24:36,145 [wrapper] Test setup, not cleaning
[2025-07-28 11:24:36] 2025-07-28 09:24:36,149 [wrapper] apfmon messages muted
[2025-07-28 11:24:36] 2025-07-28 09:24:36,153 [wrapper] ==== wrapper stdout END ====
[2025-07-28 11:24:36] 2025-07-28 09:24:36,157 [wrapper] ==== wrapper stderr END ====
[2025-07-28 11:24:36]  *** Error codes and diagnostics ***
[2025-07-28 11:24:36]     "exeErrorCode": 0,
[2025-07-28 11:24:36]     "exeErrorDiag": "",
[2025-07-28 11:24:36]     "pilotErrorCode": 0,
[2025-07-28 11:24:36]     "pilotErrorDiag": "",
[2025-07-28 11:24:36]  *** Listing of results directory ***
[2025-07-28 11:24:36] total 410708
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc    530466 Jul 27 09:44 pilot3.tar.gz
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc      5112 Jul 27 09:52 queuedata.json
[2025-07-28 11:24:36] -rwx------ 1 boinc boinc     36292 Jul 27 09:54 runpilot2-wrapper.sh
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc       100 Jul 28 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 11:24:36] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 09:51 run_atlas
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc       105 Jul 28 09:51 job.xml
[2025-07-28 11:24:36] -rw-r--r-- 2 boinc boinc 241530246 Jul 28 09:51 EVNT.45759779._000001.pool.root.1
[2025-07-28 11:24:36] -rw-r--r-- 2 boinc boinc    542881 Jul 28 09:51 input.tar.gz
[2025-07-28 11:24:36] -rw-r--r-- 2 boinc boinc     15095 Jul 28 09:51 start_atlas.sh
[2025-07-28 11:24:36] drwxrwx--x 2 boinc boinc      4096 Jul 28 09:51 shared
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc         0 Jul 28 09:51 boinc_setup_complete
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc      6455 Jul 28 09:51 init_data.xml
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc         0 Jul 28 09:51 boinc_lockfile
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc      2561 Jul 28 09:51 pandaJob.out
[2025-07-28 11:24:36] -rw------- 1 boinc boinc    978452 Jul 28 09:51 agis_schedconf.cvmfs.json
[2025-07-28 11:24:36] -rw------- 1 boinc boinc   1593052 Jul 28 09:51 agis_ddmendpoints.agis.ALL.json
[2025-07-28 11:24:36] drwx------ 4 boinc boinc      4096 Jul 28 09:51 pilot3
[2025-07-28 11:24:36] -rw------- 1 boinc boinc 173579665 Jul 28 11:23 HITS.45759781._000017.pool.root.1
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc       530 Jul 28 11:23 boinc_task_state.xml
[2025-07-28 11:24:36] -rw------- 1 boinc boinc      1019 Jul 28 11:23 memory_monitor_summary.json
[2025-07-28 11:24:36] -rw------- 1 boinc boinc    257341 Jul 28 11:23 log.45759781._000017.job.log.tgz.1
[2025-07-28 11:24:36] -rw------- 1 boinc boinc      7747 Jul 28 11:24 heartbeat.json
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc        27 Jul 28 11:24 wrapper_checkpoint.txt
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc      8192 Jul 28 11:24 boinc_mmap_file
[2025-07-28 11:24:36] -rw------- 1 boinc boinc       817 Jul 28 11:24 pilotlog.txt
[2025-07-28 11:24:36] -rw------- 1 boinc boinc        95 Jul 28 11:24 pilot_heartbeat.json
[2025-07-28 11:24:36] -rw------- 1 boinc boinc    535050 Jul 28 11:24 log.45759781._000017.job.log.1
[2025-07-28 11:24:36] -rw------- 1 boinc boinc       357 Jul 28 11:24 output.list
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc       620 Jul 28 11:24 runtime_log
[2025-07-28 11:24:36] -rw------- 1 boinc boinc    808960 Jul 28 11:24 result.tar.gz
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc      8734 Jul 28 11:24 runtime_log.err
[2025-07-28 11:24:36] -rw------- 1 boinc boinc       659 Jul 28 11:24 2SHMDmyNB07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmogULDmdxBSmn.diag
[2025-07-28 11:24:36] -rw-r--r-- 1 boinc boinc     21980 Jul 28 11:24 stderr.txt
[2025-07-28 11:24:36] HITS file was successfully produced:
[2025-07-28 11:24:36] -rw------- 1 boinc boinc 173579665 Jul 28 11:23 shared/HITS.pool.root.1
[2025-07-28 11:24:36]  *** Contents of shared directory: ***
[2025-07-28 11:24:36] total 406732
[2025-07-28 11:24:36] -rw-r--r-- 2 boinc boinc 241530246 Jul 28 09:51 ATLAS.root_0
[2025-07-28 11:24:36] -rw-r--r-- 2 boinc boinc    542881 Jul 28 09:51 input.tar.gz
[2025-07-28 11:24:36] -rw-r--r-- 2 boinc boinc     15095 Jul 28 09:51 start_atlas.sh
[2025-07-28 11:24:36] -rw------- 1 boinc boinc 173579665 Jul 28 11:23 HITS.pool.root.1
[2025-07-28 11:24:36] -rw------- 1 boinc boinc    808960 Jul 28 11:24 result.tar.gz
11:24:37 (1120590): run_atlas exited; CPU time 21086.467075
11:24:37 (1120590): called boinc_finish(0)

</stderr_txt>
]]>

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