Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:10:16 (809938): wrapper (7.7.26015): starting
13:10:16 (809938): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 13:10:16] Arguments: --nthreads 8
[2025-07-27 13:10:16] Threads: 8
[2025-07-27 13:10:16] Checking for CVMFS
[2025-07-27 13:10:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:10:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:10:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:10:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:10:16] 2.12.6.0 126724 14444 374100 148818 1 595 28969343 32935936 21623 16776704 2 46414541 99.673 71815816 11594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:10:16] CVMFS is ok
[2025-07-27 13:10:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:10:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:10:16] Further information can be found at the LHC@home message board.
[2025-07-27 13:10:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:10:16] Checking for apptainer binary...
[2025-07-27 13:10:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:10:16] Running /usr/bin/apptainer --version
[2025-07-27 13:10:16] apptainer version 1.4.1-1.el9
[2025-07-27 13:10:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:10:16] c6-12-27-3.aglt2.org
[2025-07-27 13:10:16] apptainer works
[2025-07-27 13:10:16] Set ATHENA_PROC_NUMBER=8
[2025-07-27 13:10:16] Set ATHENA_CORE_NUMBER=8
[2025-07-27 13:10:16] Starting ATLAS job with PandaID=6747376573
[2025-07-27 13:10:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:19:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:19:46] 2025-07-27 19:19:11,283 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 15:19:46] 2025-07-27 19:19:11,284 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 15:19:46] 2025-07-27 19:19:11,287 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:19:46] 2025-07-27 19:19:11,288 | INFO     | sum of square deviations: 620244187.5
[2025-07-27 15:19:46] 2025-07-27 19:19:11,289 | INFO     | sum of deviations: 23688959508.500004
[2025-07-27 15:19:46] 2025-07-27 19:19:11,289 | INFO     | mean x: 1753640077.5
[2025-07-27 15:19:46] 2025-07-27 19:19:11,289 | INFO     | mean y: 2128640.8333333335
[2025-07-27 15:19:46] 2025-07-27 19:19:11,289 | INFO     | -- intersect: -66974571222.84787
[2025-07-27 15:19:46] 2025-07-27 19:19:11,289 | INFO     | intersect: -66974571222.84787
[2025-07-27 15:19:46] 2025-07-27 19:19:11,290 | INFO     | chi2: 1.7173863362444042
[2025-07-27 15:19:46] 2025-07-27 19:19:11,290 | INFO     | sum of square deviations: 549294020.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,291 | INFO     | sum of deviations: 24003843552.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,291 | INFO     | mean x: 1753639925.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,291 | INFO     | mean y: 2129296.6363636362
[2025-07-27 15:19:46] 2025-07-27 19:19:11,291 | INFO     | -- intersect: -76630961313.4544
[2025-07-27 15:19:46] 2025-07-27 19:19:11,292 | INFO     | intersect: -76630961313.4544
[2025-07-27 15:19:46] 2025-07-27 19:19:11,292 | INFO     | chi2: 1.700366318696475
[2025-07-27 15:19:46] 2025-07-27 19:19:11,292 | INFO     | current chi2=1.700366318696475 (change=0.9910418633671367 %)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,292 | INFO     | right removable region: 120
[2025-07-27 15:19:46] 2025-07-27 19:19:11,292 | INFO     | sum of square deviations: 549294020.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,293 | INFO     | sum of deviations: 6809048750.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,293 | INFO     | mean x: 1753640230.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,293 | INFO     | mean y: 2164337.4380165287
[2025-07-27 15:19:46] 2025-07-27 19:19:11,294 | INFO     | -- intersect: -21735960202.915096
[2025-07-27 15:19:46] 2025-07-27 19:19:11,294 | INFO     | intersect: -21735960202.915096
[2025-07-27 15:19:46] 2025-07-27 19:19:11,294 | INFO     | chi2: 0.3011705790865142
[2025-07-27 15:19:46] 2025-07-27 19:19:11,294 | INFO     | current chi2=0.3011705790865142 (change=82.4634345382579 %)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,294 | INFO     | sum of square deviations: 483971865.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,295 | INFO     | sum of deviations: -1701004489.4999993
[2025-07-27 15:19:46] 2025-07-27 19:19:11,295 | INFO     | mean x: 1753640382.5
[2025-07-27 15:19:46] 2025-07-27 19:19:11,295 | INFO     | mean y: 2184065.0086206896
[2025-07-27 15:19:46] 2025-07-27 19:19:11,295 | INFO     | -- intersect: 6165662521.759398
[2025-07-27 15:19:46] 2025-07-27 19:19:11,295 | INFO     | intersect: 6165662521.759398
[2025-07-27 15:19:46] 2025-07-27 19:19:11,296 | INFO     | chi2: 0.04365900090658462
[2025-07-27 15:19:46] 2025-07-27 19:19:11,296 | INFO     | current chi2=0.04365900090658462 (change=85.5035637813602 %)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,296 | INFO     | sum of square deviations: 424045160.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,297 | INFO     | sum of deviations: -1799832998.9999993
[2025-07-27 15:19:46] 2025-07-27 19:19:11,297 | INFO     | mean x: 1753640535.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,297 | INFO     | mean y: 2184288.225225225
[2025-07-27 15:19:46] 2025-07-27 19:19:11,297 | INFO     | -- intersect: 7445401192.945971
[2025-07-27 15:19:46] 2025-07-27 19:19:11,297 | INFO     | intersect: 7445401192.945971
[2025-07-27 15:19:46] 2025-07-27 19:19:11,297 | INFO     | chi2: 0.042137701086948226
[2025-07-27 15:19:46] 2025-07-27 19:19:11,298 | INFO     | current chi2=0.042137701086948226 (change=3.4845044276012183 %)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,298 | INFO     | left removable region: 30
[2025-07-27 15:19:46] 2025-07-27 19:19:11,298 | INFO     | sum of square deviations: 226022842.5
[2025-07-27 15:19:46] 2025-07-27 19:19:11,298 | INFO     | sum of deviations: 346644212.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | mean x: 1753640809.5
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | mean y: 2184334.0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | -- intersect: -2687320097.571644
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | intersect: -2687320097.571644
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | chi2: 0.029689592340188278
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | -- intersect: -2687320097.571644
[2025-07-27 15:19:46] 2025-07-27 19:19:11,299 | INFO     | current memory leak: 1.53 B/s (using 90 data points, chi2=0.03)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,300 | INFO     | could have reported an average CPU frequency of 2663 MHz (8 samples)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,300 | INFO     | ..............................
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . Timing measurements:
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . get job = 0 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . initial setup = 4 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . payload setup = 9 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . stage-in = 0 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . payload execution = 7678 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . stage-out = 1 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | . log creation = 0 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,301 | INFO     | ..............................
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | 
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | job summary report
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | --------------------------------------------------
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | PanDA job id: 6747376573
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | task id: 45743349
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | errors: (none)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,658 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | pilot state: finished 
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | transexitcode: 0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | exeerrorcode: 0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | exeerrordiag: 
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | exitcode: 0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | exitmsg: OK
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | cpuconsumptiontime: 55805 s
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | nevents: 400
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | neventsw: 0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | pid: 820059
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | pgrp: 820059
[2025-07-27 15:19:46] 2025-07-27 19:19:11,659 | INFO     | corecount: 8
[2025-07-27 15:19:46] 2025-07-27 19:19:11,660 | INFO     | event service: False
[2025-07-27 15:19:46] 2025-07-27 19:19:11,660 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 7691: 2425123, 7692: 2434121, 7693: 2434177, 7701: 2434499}
[2025-07-27 15:19:46] 2025-07-27 19:19:11,660 | INFO     | --------------------------------------------------
[2025-07-27 15:19:46] 2025-07-27 19:19:11,660 | INFO     | 
[2025-07-27 15:19:46] 2025-07-27 19:19:11,660 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 15:19:46] 2025-07-27 19:19:11,687 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,688 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,689 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,689 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,689 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,689 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:19:46] 2025-07-27 19:19:11,689 | INFO     | job 6747376573 has completed (purged errors)
[2025-07-27 15:19:46] 2025-07-27 19:19:11,689 | INFO     | overall cleanup function is called
[2025-07-27 15:19:46] 2025-07-27 19:19:12,697 | INFO     | --- collectZombieJob: --- 10, [820059]
[2025-07-27 15:19:46] 2025-07-27 19:19:12,698 | INFO     | zombie collector waiting for pid 820059
[2025-07-27 15:19:46] 2025-07-27 19:19:12,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:19:46] 2025-07-27 19:19:12,699 | INFO     | collected zombie processes
[2025-07-27 15:19:46] 2025-07-27 19:19:12,700 | INFO     | will attempt to kill all subprocesses of pid=820059
[2025-07-27 15:19:46] 2025-07-27 19:19:12,878 | INFO     | PID=813571 has CPU usage=14.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 15:19:46] 2025-07-27 19:19:12,881 | INFO     | .. there are 25 such processes running
[2025-07-27 15:19:46] 2025-07-27 19:19:13,323 | INFO     | process IDs to be killed: [820059] (in reverse order)
[2025-07-27 15:19:46] 2025-07-27 19:19:13,473 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:19:46] 2025-07-27 19:19:13,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:19:46] 2025-07-27 19:19:13,491 | INFO     | did not find any defunct processes belonging to 820059
[2025-07-27 15:19:46] 2025-07-27 19:19:13,507 | INFO     | did not find any defunct processes belonging to 820059
[2025-07-27 15:19:46] 2025-07-27 19:19:13,507 | INFO     | ready for new job
[2025-07-27 15:19:46] 2025-07-27 19:19:13,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:19:46] 2025-07-27 19:19:13,510 | INFO     | ***************************************
[2025-07-27 15:19:46] 2025-07-27 19:19:13,510 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:19:46] 2025-07-27 19:19:13,510 | INFO     | ***************************************
[2025-07-27 15:19:46] 2025-07-27 19:19:13,510 | INFO     | 
[2025-07-27 15:19:46] 2025-07-27 19:19:13,515 | INFO     | architecture information:
[2025-07-27 15:19:46] 2025-07-27 19:19:13,516 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:19:46] 2025-07-27 19:19:13,536 | INFO     | cat /etc/os-release:
[2025-07-27 15:19:46] NAME="CentOS Linux"
[2025-07-27 15:19:46] VERSION="7 (Core)"
[2025-07-27 15:19:46] ID="centos"
[2025-07-27 15:19:46] ID_LIKE="rhel fedora"
[2025-07-27 15:19:46] VERSION_ID="7"
[2025-07-27 15:19:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:19:46] ANSI_COLOR="0;31"
[2025-07-27 15:19:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:19:46] HOME_URL="https://www.centos.org/"
[2025-07-27 15:19:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:19:46] 
[2025-07-27 15:19:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:19:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:19:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:19:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:19:46] 
[2025-07-27 15:19:46] 2025-07-27 19:19:13,536 | INFO     | ***************************************
[2025-07-27 15:19:46] 2025-07-27 19:19:14,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 15:19:46] 2025-07-27 19:19:14,065 | INFO     | sufficient remaining disk space (95740231680 B)
[2025-07-27 15:19:46] 2025-07-27 19:19:14,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:19:46] 2025-07-27 19:19:14,065 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:19:46] 2025-07-27 19:19:14,065 | INFO     | update_server=False
[2025-07-27 15:19:46] 2025-07-27 19:19:14,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:19:46] 2025-07-27 19:19:14,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:19:46] 2025-07-27 19:19:14,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:19:46] 2025-07-27 19:19:14,066 | INFO     | aborting loop
[2025-07-27 15:19:46] 2025-07-27 19:19:14,273 | INFO     | all payload control threads have been joined
[2025-07-27 15:19:46] 2025-07-27 19:19:14,538 | INFO     | all job control threads have been joined
[2025-07-27 15:19:46] 2025-07-27 19:19:14,832 | INFO     | all data control threads have been joined
[2025-07-27 15:19:46] 2025-07-27 19:19:15,070 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,071 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,180 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,278 | INFO     | [payload] control thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,378 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:19:46] 2025-07-27 19:19:15,524 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,544 | INFO     | [job] control thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,837 | INFO     | [data] control thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:15,904 | INFO     | [job] validate thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:16,249 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:16,269 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:16,338 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:16,344 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:16,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:19:46] 2025-07-27 19:19:17,384 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:17,438 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:18,072 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:19:46] 2025-07-27 19:19:18,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139775765268288)>', '<ExcThread(monitor, started 139775122065152)>']
[2025-07-27 15:19:46] 2025-07-27 19:19:23,313 | INFO     | all workflow threads have been joined
[2025-07-27 15:19:46] 2025-07-27 19:19:23,315 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:19:46] 2025-07-27 19:19:23,316 | INFO     | traces error code: 0
[2025-07-27 15:19:46] 2025-07-27 19:19:23,316 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:19:46] 2025-07-27 19:19:45,624 | INFO     | PID=813571 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 15:19:46] 2025-07-27 19:19:45,624 | INFO     | .. there are 25 such processes running
[2025-07-27 15:19:46] 2025-07-27 19:19:45,625 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:19:46] 2025-07-27 19:19:45,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:19:46] 2025-07-27 19:19:45,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:19:46] 2025-07-27 19:19:45,625 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:19:46] 2025-07-27 19:19:45,625 | INFO     | [monitor] control thread has ended
[2025-07-27 15:19:46] 2025-07-27 19:19:45,880 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:19:46] 2025-07-27 19:19:45,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:19:46] 2025-07-27 19:19:45,892 [wrapper] pilotpid: 813571
[2025-07-27 15:19:46] 2025-07-27 19:19:45,897 [wrapper] Pilot exit status: 0
[2025-07-27 15:19:46] 2025-07-27 19:19:45,913 [wrapper] pandaids: 6747376573
[2025-07-27 15:19:46] 2025-07-27 19:19:46,008 [wrapper] cleanup supervisor_pilot 1306920 813572
[2025-07-27 15:19:46] 2025-07-27 19:19:46,015 [wrapper] Test setup, not cleaning
[2025-07-27 15:19:46] 2025-07-27 19:19:46,020 [wrapper] apfmon messages muted
[2025-07-27 15:19:46] 2025-07-27 19:19:46,024 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:19:46] 2025-07-27 19:19:46,027 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:19:46]  *** Error codes and diagnostics ***
[2025-07-27 15:19:46]     "exeErrorCode": 0,
[2025-07-27 15:19:46]     "exeErrorDiag": "",
[2025-07-27 15:19:46]     "pilotErrorCode": 0,
[2025-07-27 15:19:46]     "pilotErrorDiag": "",
[2025-07-27 15:19:46]  *** Listing of results directory ***
[2025-07-27 15:19:46] total 360384
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:42 pilot3.tar.gz
[2025-07-27 15:19:46] -rwx------. 1 boincer umatlas     36292 Jul 27 07:47 runpilot2-wrapper.sh
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 07:47 queuedata.json
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:19:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:10 run_atlas
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:10 job.xml
[2025-07-27 15:19:46] -rw-r--r--. 2 boincer umatlas 148501924 Jul 27 13:10 EVNT.45743347._002652.pool.root.1
[2025-07-27 15:19:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:10 start_atlas.sh
[2025-07-27 15:19:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:10 shared
[2025-07-27 15:19:46] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 13:10 input.tar.gz
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:10 boinc_lockfile
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 13:10 pandaJob.out
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas    980125 Jul 27 13:10 agis_schedconf.cvmfs.json
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:19:46] drwx------. 4 boincer umatlas      4096 Jul 27 13:10 pilot3
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas      6856 Jul 27 15:12 init_data.xml
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas 214544240 Jul 27 15:18 HITS.45743349._047782.pool.root.1
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas       529 Jul 27 15:18 boinc_task_state.xml
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas        95 Jul 27 15:18 pilot_heartbeat.json
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas      1042 Jul 27 15:18 memory_monitor_summary.json
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas    329680 Jul 27 15:19 log.45743349._047782.job.log.tgz.1
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas      7829 Jul 27 15:19 heartbeat.json
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas       822 Jul 27 15:19 pilotlog.txt
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 15:19 boinc_mmap_file
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas        27 Jul 27 15:19 wrapper_checkpoint.txt
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas    724917 Jul 27 15:19 log.45743349._047782.job.log.1
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas       357 Jul 27 15:19 output.list
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas       620 Jul 27 15:19 runtime_log
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas   1075200 Jul 27 15:19 result.tar.gz
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas       656 Jul 27 15:19 XZQMDmM2E07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmd9ULDmXRaLvn.diag
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas      8670 Jul 27 15:19 runtime_log.err
[2025-07-27 15:19:46] -rw-r--r--. 1 boincer umatlas     20990 Jul 27 15:19 stderr.txt
[2025-07-27 15:19:46] HITS file was successfully produced:
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas 214544240 Jul 27 15:18 shared/HITS.pool.root.1
[2025-07-27 15:19:46]  *** Contents of shared directory: ***
[2025-07-27 15:19:46] total 356148
[2025-07-27 15:19:46] -rw-r--r--. 2 boincer umatlas 148501924 Jul 27 13:10 ATLAS.root_0
[2025-07-27 15:19:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:10 start_atlas.sh
[2025-07-27 15:19:46] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 13:10 input.tar.gz
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas 214544240 Jul 27 15:18 HITS.pool.root.1
[2025-07-27 15:19:46] -rw-------. 1 boincer umatlas   1075200 Jul 27 15:19 result.tar.gz
15:19:47 (809938): run_atlas exited; CPU time 56131.897611
15:19:47 (809938): called boinc_finish(0)

</stderr_txt>
]]>

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