Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:06:00 (1788800): wrapper (7.7.26015): starting
13:06:00 (1788800): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 13:06:00] Arguments: --nthreads 8
[2025-07-27 13:06:00] Threads: 8
[2025-07-27 13:06:00] Checking for CVMFS
[2025-07-27 13:06:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:06:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:06:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:06:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:06:01] 2.13.1.0 641173 14448 216564 148818 0 701 36147565 40960000 18715 16776704 0 50353543 99.809 50837290 40451 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 13:06:01] CVMFS is ok
[2025-07-27 13:06:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:06:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:06:01] Further information can be found at the LHC@home message board.
[2025-07-27 13:06:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:06:01] Checking for apptainer binary...
[2025-07-27 13:06:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:06:01] Running /usr/bin/apptainer --version
[2025-07-27 13:06:01] apptainer version 1.4.1-1.el9
[2025-07-27 13:06:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:06:01] c-212-8.aglt2.org
[2025-07-27 13:06:01] apptainer works
[2025-07-27 13:06:01] Set ATHENA_PROC_NUMBER=8
[2025-07-27 13:06:01] Set ATHENA_CORE_NUMBER=8
[2025-07-27 13:06:01] Starting ATLAS job with PandaID=6747385535
[2025-07-27 13:06:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:45:57]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:45:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 14:45:57]  replicas=None
[2025-07-27 14:45:57]  scope=mc23_13p6TeV
[2025-07-27 14:45:57]  status=None
[2025-07-27 14:45:57]  status_code=0
[2025-07-27 14:45:57]  storage_token=
[2025-07-27 14:45:57]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747385535/log.45743349._047856.job.log.tgz.1
[2025-07-27 14:45:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/2c/log.45743349._047856.job.log.tgz.1
[2025-07-27 14:45:57]  workdir=None
[2025-07-27 14:45:57] ]
[2025-07-27 14:45:57] 2025-07-27 18:45:15,727 | INFO     | transferring file log.45743349._047856.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747385535/log.45743349._047856.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:45:57] 2025-07-27 18:45:15,727 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747385535/log.45743349._047856.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._047856.job
[2025-07-27 14:45:57] 2025-07-27 18:45:15,758 | INFO     | adding to output.list: log.45743349._047856.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/2c/log.45743349._047856.job.log.tg
[2025-07-27 14:45:57] 2025-07-27 18:45:15,759 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:45:57] 2025-07-27 18:45:15,759 | INFO     | summary of transferred files:
[2025-07-27 14:45:57] 2025-07-27 18:45:15,759 | INFO     |  -- lfn=log.45743349._047856.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:45:57] 2025-07-27 18:45:15,759 | INFO     | stage-out finished correctly
[2025-07-27 14:45:57] 2025-07-27 18:45:16,049 | WARNING  | process 1800096 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 14:45:57] 2025-07-27 18:45:16,050 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747385535/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:45:57] 2025-07-27 18:45:16,544 | INFO     | number of running child processes to parent process 1800096: 1
[2025-07-27 14:45:57] 2025-07-27 18:45:16,544 | INFO     | maximum number of monitored processes: 6
[2025-07-27 14:45:57] 2025-07-27 18:45:16,829 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:45:57] 2025-07-27 18:45:16,914 | INFO     | job 6747385535 has state=finished
[2025-07-27 14:45:57] 2025-07-27 18:45:16,915 | INFO     | preparing for final server update for job 6747385535 in state='finished'
[2025-07-27 14:45:57] 2025-07-27 18:45:16,915 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:45:57] 2025-07-27 18:45:16,915 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:45:57] 2025-07-27 18:45:16,915 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:45:57] 2025-07-27 18:45:16,916 | INFO     | job 6747385535 has finished - writing final server update
[2025-07-27 14:45:57] 2025-07-27 18:45:16,916 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:45:57] 2025-07-27 18:45:16,916 | INFO     | executing command: lscpu
[2025-07-27 14:45:57] 2025-07-27 18:45:16,994 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:45:57] 2025-07-27 18:45:19,047 | INFO     | monitor loop #426: job 0:6747385535 is in state 'finished'
[2025-07-27 14:45:57] 2025-07-27 18:45:19,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:45:57] 2025-07-27 18:45:21,550 | INFO     | monitor loop #427: job 0:6747385535 is in state 'finished'
[2025-07-27 14:45:57] 2025-07-27 18:45:21,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,298 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 14:45:57] 2025-07-27 18:45:23,305 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2937.2053125
[2025-07-27 14:45:57] 2025-07-27 18:45:23,323 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747385535/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,324 | INFO     | extracted standard info from prmon json
[2025-07-27 14:45:57] 2025-07-27 18:45:23,324 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:45:57] 2025-07-27 18:45:23,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:45:57] 2025-07-27 18:45:23,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:45:57] 2025-07-27 18:45:23,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:45:57] 2025-07-27 18:45:23,328 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:45:57] 2025-07-27 18:45:23,328 | INFO     | sum of square deviations: 226022842.5
[2025-07-27 14:45:57] 2025-07-27 18:45:23,328 | INFO     | sum of deviations: 956094967.9999999
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | mean x: 1753639035.5
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | mean y: 2512722.3777777776
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | -- intersect: -7415522724.769221
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | intersect: -7415522724.769221
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | chi2: 0.01213067719866414
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | -- intersect: -7415522724.769221
[2025-07-27 14:45:57] 2025-07-27 18:45:23,329 | INFO     | current memory leak: 4.23 B/s (using 90 data points, chi2=0.01)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | could have reported an average CPU frequency of 3018 MHz (7 samples)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | ..............................
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . Timing measurements:
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . get job = 0 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . initial setup = 3 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . payload setup = 11 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . stage-in = 0 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . payload execution = 5903 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . stage-out = 0 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | . log creation = 0 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,330 | INFO     | ..............................
[2025-07-27 14:45:57] 2025-07-27 18:45:23,447 | INFO     | 
[2025-07-27 14:45:57] 2025-07-27 18:45:23,447 | INFO     | job summary report
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | --------------------------------------------------
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | PanDA job id: 6747385535
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | task id: 45743349
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | errors: (none)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | pilot state: finished 
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | transexitcode: 0
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | exeerrorcode: 0
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | exeerrordiag: 
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | exitcode: 0
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | exitmsg: OK
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | cpuconsumptiontime: 38215 s
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | nevents: 400
[2025-07-27 14:45:57] 2025-07-27 18:45:23,448 | INFO     | neventsw: 0
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | pid: 1800096
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | pgrp: 1800096
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | corecount: 8
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | event service: False
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | sizes: {0: 2397198, 1: 2397453, 8: 2397715, 12: 2397743, 5918: 2424389, 5919: 2433387, 5920: 2433571, 5926: 2433765}
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | --------------------------------------------------
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | 
[2025-07-27 14:45:57] 2025-07-27 18:45:23,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 14:45:57] 2025-07-27 18:45:23,478 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,479 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,479 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,479 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | job 6747385535 has completed (purged errors)
[2025-07-27 14:45:57] 2025-07-27 18:45:23,482 | INFO     | overall cleanup function is called
[2025-07-27 14:45:57] 2025-07-27 18:45:24,491 | INFO     | --- collectZombieJob: --- 10, [1800096]
[2025-07-27 14:45:57] 2025-07-27 18:45:24,492 | INFO     | zombie collector waiting for pid 1800096
[2025-07-27 14:45:57] 2025-07-27 18:45:24,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:45:57] 2025-07-27 18:45:24,492 | INFO     | collected zombie processes
[2025-07-27 14:45:57] 2025-07-27 18:45:24,492 | INFO     | will attempt to kill all subprocesses of pid=1800096
[2025-07-27 14:45:57] 2025-07-27 18:45:24,886 | INFO     | process IDs to be killed: [1800096] (in reverse order)
[2025-07-27 14:45:57] 2025-07-27 18:45:25,031 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:45:57] 2025-07-27 18:45:25,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:45:57] 2025-07-27 18:45:25,049 | INFO     | did not find any defunct processes belonging to 1800096
[2025-07-27 14:45:57] 2025-07-27 18:45:25,068 | INFO     | did not find any defunct processes belonging to 1800096
[2025-07-27 14:45:57] 2025-07-27 18:45:25,068 | INFO     | ready for new job
[2025-07-27 14:45:57] 2025-07-27 18:45:25,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:45:57] 2025-07-27 18:45:25,070 | INFO     | ***************************************
[2025-07-27 14:45:57] 2025-07-27 18:45:25,071 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:45:57] 2025-07-27 18:45:25,071 | INFO     | ***************************************
[2025-07-27 14:45:57] 2025-07-27 18:45:25,071 | INFO     | 
[2025-07-27 14:45:57] 2025-07-27 18:45:25,077 | INFO     | architecture information:
[2025-07-27 14:45:57] 2025-07-27 18:45:25,078 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:45:57] 2025-07-27 18:45:25,104 | INFO     | cat /etc/os-release:
[2025-07-27 14:45:57] NAME="CentOS Linux"
[2025-07-27 14:45:57] VERSION="7 (Core)"
[2025-07-27 14:45:57] ID="centos"
[2025-07-27 14:45:57] ID_LIKE="rhel fedora"
[2025-07-27 14:45:57] VERSION_ID="7"
[2025-07-27 14:45:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:45:57] ANSI_COLOR="0;31"
[2025-07-27 14:45:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:45:57] HOME_URL="https://www.centos.org/"
[2025-07-27 14:45:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:45:57] 
[2025-07-27 14:45:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:45:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:45:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:45:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:45:57] 
[2025-07-27 14:45:57] 2025-07-27 18:45:25,104 | INFO     | ***************************************
[2025-07-27 14:45:57] 2025-07-27 18:45:25,607 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 14:45:57] 2025-07-27 18:45:25,632 | INFO     | sufficient remaining disk space (128970653696 B)
[2025-07-27 14:45:57] 2025-07-27 18:45:25,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:45:57] 2025-07-27 18:45:25,632 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:45:57] 2025-07-27 18:45:25,632 | INFO     | update_server=False
[2025-07-27 14:45:57] 2025-07-27 18:45:25,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:45:57] 2025-07-27 18:45:25,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:45:57] 2025-07-27 18:45:25,634 | INFO     | aborting loop
[2025-07-27 14:45:57] 2025-07-27 18:45:26,071 | INFO     | all data control threads have been joined
[2025-07-27 14:45:57] 2025-07-27 18:45:26,092 | INFO     | all job control threads have been joined
[2025-07-27 14:45:57] 2025-07-27 18:45:26,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:45:57] 2025-07-27 18:45:26,639 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:26,640 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:26,731 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:26,912 | INFO     | all payload control threads have been joined
[2025-07-27 14:45:57] 2025-07-27 18:45:26,976 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,075 | INFO     | [data] control thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,097 | INFO     | [job] control thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,103 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,393 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:45:57] 2025-07-27 18:45:27,824 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,829 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,918 | INFO     | [payload] control thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:27,935 | INFO     | [job] validate thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:28,386 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:28,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:45:57] 2025-07-27 18:45:29,468 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:31,435 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:36,459 | INFO     | job.realtimelogging is not enabled
[2025-07-27 14:45:57] 2025-07-27 18:45:37,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:45:57] 2025-07-27 18:45:37,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140681162774336)>', '<ExcThread(monitor, started 140680429033216)>']
[2025-07-27 14:45:57] 2025-07-27 18:45:42,889 | INFO     | all workflow threads have been joined
[2025-07-27 14:45:57] 2025-07-27 18:45:42,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:45:57] 2025-07-27 18:45:42,890 | INFO     | traces error code: 0
[2025-07-27 14:45:57] 2025-07-27 18:45:42,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:45:57] 2025-07-27 18:45:55,528 | INFO     | 5950s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 14:45:57] 2025-07-27 18:45:57,073 | INFO     | PID=1793073 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:45:57] 2025-07-27 18:45:57,073 | INFO     | .. there are 22 such processes running
[2025-07-27 14:45:57] 2025-07-27 18:45:57,073 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:45:57] 2025-07-27 18:45:57,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:45:57] 2025-07-27 18:45:57,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:45:57] 2025-07-27 18:45:57,074 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:45:57] 2025-07-27 18:45:57,074 | INFO     | [monitor] control thread has ended
[2025-07-27 14:45:57] 2025-07-27 18:45:57,221 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:45:57] 2025-07-27 18:45:57,229 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:45:57] 2025-07-27 18:45:57,232 [wrapper] pilotpid: 1793073
[2025-07-27 14:45:57] 2025-07-27 18:45:57,234 [wrapper] Pilot exit status: 0
[2025-07-27 14:45:57] 2025-07-27 18:45:57,249 [wrapper] pandaids: 6747385535
[2025-07-27 14:45:57] 2025-07-27 18:45:57,335 [wrapper] cleanup supervisor_pilot 2046774 1793074
[2025-07-27 14:45:57] 2025-07-27 18:45:57,338 [wrapper] Test setup, not cleaning
[2025-07-27 14:45:57] 2025-07-27 18:45:57,340 [wrapper] apfmon messages muted
[2025-07-27 14:45:57] 2025-07-27 18:45:57,344 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:45:57] 2025-07-27 18:45:57,349 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:45:57]  *** Error codes and diagnostics ***
[2025-07-27 14:45:57]     "exeErrorCode": 0,
[2025-07-27 14:45:57]     "exeErrorDiag": "",
[2025-07-27 14:45:57]     "pilotErrorCode": 0,
[2025-07-27 14:45:57]     "pilotErrorDiag": "",
[2025-07-27 14:45:57]  *** Listing of results directory ***
[2025-07-27 14:45:57] total 353272
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:42 pilot3.tar.gz
[2025-07-27 14:45:57] -rwx------. 1 boincer umatlas     36292 Jul 27 07:47 runpilot2-wrapper.sh
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 07:47 queuedata.json
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:45:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:06 run_atlas
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:06 job.xml
[2025-07-27 14:45:57] -rw-r--r--. 2 boincer umatlas 147618342 Jul 27 13:06 EVNT.45743347._001848.pool.root.1
[2025-07-27 14:45:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:06 start_atlas.sh
[2025-07-27 14:45:57] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:06 shared
[2025-07-27 14:45:57] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 13:06 input.tar.gz
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:06 boinc_lockfile
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 13:06 pandaJob.out
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas    980125 Jul 27 13:06 agis_schedconf.cvmfs.json
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:06 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:45:57] drwx------. 4 boincer umatlas      4096 Jul 27 13:06 pilot3
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas      6943 Jul 27 14:38 init_data.xml
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas 208494210 Jul 27 14:44 HITS.45743349._047856.pool.root.1
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas       529 Jul 27 14:44 boinc_task_state.xml
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas        95 Jul 27 14:44 pilot_heartbeat.json
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas      1031 Jul 27 14:45 memory_monitor_summary.json
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas    319959 Jul 27 14:45 log.45743349._047856.job.log.tgz.1
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas      7763 Jul 27 14:45 heartbeat.json
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:45 wrapper_checkpoint.txt
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas       938 Jul 27 14:45 pilotlog.txt
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas    564862 Jul 27 14:45 log.45743349._047856.job.log.1
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas       357 Jul 27 14:45 output.list
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:45 runtime_log
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas    901120 Jul 27 14:45 result.tar.gz
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:45 boinc_mmap_file
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 14:45 runtime_log.err
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas       651 Jul 27 14:45 75vMDmM2E07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm59ULDmWQzwgn.diag
[2025-07-27 14:45:57] -rw-r--r--. 1 boincer umatlas     21933 Jul 27 14:45 stderr.txt
[2025-07-27 14:45:57] HITS file was successfully produced:
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas 208494210 Jul 27 14:44 shared/HITS.pool.root.1
[2025-07-27 14:45:57]  *** Contents of shared directory: ***
[2025-07-27 14:45:57] total 349200
[2025-07-27 14:45:57] -rw-r--r--. 2 boincer umatlas 147618342 Jul 27 13:06 ATLAS.root_0
[2025-07-27 14:45:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:06 start_atlas.sh
[2025-07-27 14:45:57] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 13:06 input.tar.gz
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas 208494210 Jul 27 14:44 HITS.pool.root.1
[2025-07-27 14:45:57] -rw-------. 1 boincer umatlas    901120 Jul 27 14:45 result.tar.gz
14:45:59 (1788800): run_atlas exited; CPU time 38387.257076
14:45:59 (1788800): called boinc_finish(0)

</stderr_txt>
]]>

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