Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:00:48 (437844): wrapper (7.7.26015): starting
13:00:48 (437844): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 13:00:48] Arguments: --nthreads 8
[2025-07-27 13:00:48] Threads: 8
[2025-07-27 13:00:48] Checking for CVMFS
[2025-07-27 13:00:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:00:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:00:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:00:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:00:48] 2.12.6.0 2720467 18635 236568 148818 0 743 33963542 40960001 15770 16776704 0 181634912 99.740 152413189 27586 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:00:48] CVMFS is ok
[2025-07-27 13:00:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:00:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:00:48] Further information can be found at the LHC@home message board.
[2025-07-27 13:00:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:00:48] Checking for apptainer binary...
[2025-07-27 13:00:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:00:48] Running /usr/bin/apptainer --version
[2025-07-27 13:00:48] apptainer version 1.4.1-1.el9
[2025-07-27 13:00:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:00:49] c8-16-1.aglt2.org
[2025-07-27 13:00:49] apptainer works
[2025-07-27 13:00:49] Set ATHENA_PROC_NUMBER=8
[2025-07-27 13:00:49] Set ATHENA_CORE_NUMBER=8
[2025-07-27 13:00:49] Starting ATLAS job with PandaID=6745100158
[2025-07-27 13:00:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:56:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:56:31]  scope=mc23_13p6TeV
[2025-07-27 13:56:31]  status=None
[2025-07-27 13:56:31]  status_code=0
[2025-07-27 13:56:31]  storage_token=
[2025-07-27 13:56:31]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6745100158/log.45743349._034778.job.log.tgz.1
[2025-07-27 13:56:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9b/28/log.45743349._034778.job.log.tgz.1
[2025-07-27 13:56:31]  workdir=None
[2025-07-27 13:56:31] ]
[2025-07-27 13:56:31] 2025-07-27 17:55:46,500 | INFO     | transferring file log.45743349._034778.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745100158/log.45743349._034778.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:56:31] 2025-07-27 17:55:46,500 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745100158/log.45743349._034778.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._034778.job
[2025-07-27 13:56:31] 2025-07-27 17:55:46,522 | INFO     | adding to output.list: log.45743349._034778.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9b/28/log.45743349._034778.job.log.tg
[2025-07-27 13:56:31] 2025-07-27 17:55:46,522 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:56:31] 2025-07-27 17:55:46,522 | INFO     | summary of transferred files:
[2025-07-27 13:56:31] 2025-07-27 17:55:46,522 | INFO     |  -- lfn=log.45743349._034778.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:56:31] 2025-07-27 17:55:46,523 | INFO     | stage-out finished correctly
[2025-07-27 13:56:31] 2025-07-27 17:55:47,700 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:56:31] 2025-07-27 17:55:49,511 | INFO     | job 6745100158 has state=finished
[2025-07-27 13:56:31] 2025-07-27 17:55:49,511 | INFO     | preparing for final server update for job 6745100158 in state='finished'
[2025-07-27 13:56:31] 2025-07-27 17:55:49,512 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:56:31] 2025-07-27 17:55:49,512 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:56:31] 2025-07-27 17:55:49,512 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:56:31] 2025-07-27 17:55:49,512 | INFO     | job 6745100158 has finished - writing final server update
[2025-07-27 13:56:31] 2025-07-27 17:55:49,512 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:56:31] 2025-07-27 17:55:49,514 | INFO     | executing command: lscpu
[2025-07-27 13:56:31] 2025-07-27 17:55:49,596 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:56:31] 2025-07-27 17:55:52,433 | INFO     | PID=446587 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 13:56:31] 2025-07-27 17:55:52,434 | INFO     | .. there are 28 such processes running
[2025-07-27 13:56:31] 2025-07-27 17:55:53,063 | WARNING  | process 464468 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 13:56:31] 2025-07-27 17:55:53,064 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745100158/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:56:31] 2025-07-27 17:55:53,563 | INFO     | number of running child processes to parent process 464468: 1
[2025-07-27 13:56:31] 2025-07-27 17:55:53,563 | INFO     | maximum number of monitored processes: 6
[2025-07-27 13:56:31] 2025-07-27 17:55:56,079 | INFO     | monitor loop #242: job 0:6745100158 is in state 'finished'
[2025-07-27 13:56:31] 2025-07-27 17:55:56,079 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:56:31] 2025-07-27 17:55:58,589 | INFO     | monitor loop #243: job 0:6745100158 is in state 'finished'
[2025-07-27 13:56:31] 2025-07-27 17:55:58,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,106 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 13:56:31] 2025-07-27 17:55:59,112 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3744.378343750001
[2025-07-27 13:56:31] 2025-07-27 17:55:59,125 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745100158/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,125 | INFO     | extracted standard info from prmon json
[2025-07-27 13:56:31] 2025-07-27 17:55:59,125 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:56:31] 2025-07-27 17:55:59,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:56:31] 2025-07-27 17:55:59,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:56:31] 2025-07-27 17:55:59,126 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | sum of square deviations: 32179208.0
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | sum of deviations: -225841580.99999997
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | mean x: 1753637399.0
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | mean y: 2209487.212765957
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | -- intersect: 12309667231.072956
[2025-07-27 13:56:31] 2025-07-27 17:55:59,127 | INFO     | intersect: 12309667231.072956
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | chi2: 0.010265278158938025
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | -- intersect: 12309667231.072956
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | current memory leak: -7.02 B/s (using 47 data points, chi2=0.01)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | could have reported an average CPU frequency of 3727 MHz (5 samples)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | ..............................
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . Timing measurements:
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . get job = 0 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . initial setup = 3 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . payload setup = 8 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . stage-in = 0 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . payload execution = 3256 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . stage-out = 0 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | . log creation = 0 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,128 | INFO     | ..............................
[2025-07-27 13:56:31] 2025-07-27 17:55:59,186 | INFO     | 
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | job summary report
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | --------------------------------------------------
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | PanDA job id: 6745100158
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | task id: 45743349
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | errors: (none)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | pilot state: finished 
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | transexitcode: 0
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | exeerrorcode: 0
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | exeerrordiag: 
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | exitcode: 0
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | exitmsg: OK
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | cpuconsumptiontime: 24326 s
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | nevents: 400
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | neventsw: 0
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | pid: 464468
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | pgrp: 464468
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | corecount: 8
[2025-07-27 13:56:31] 2025-07-27 17:55:59,189 | INFO     | event service: False
[2025-07-27 13:56:31] 2025-07-27 17:55:59,190 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 3268: 2423199, 3269: 2432197, 3270: 2432253, 3281: 2432607}
[2025-07-27 13:56:31] 2025-07-27 17:55:59,190 | INFO     | --------------------------------------------------
[2025-07-27 13:56:31] 2025-07-27 17:55:59,190 | INFO     | 
[2025-07-27 13:56:31] 2025-07-27 17:55:59,190 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 13:56:31] 2025-07-27 17:55:59,232 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,234 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,234 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,235 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:56:31] 2025-07-27 17:55:59,235 | INFO     | job 6745100158 has completed (purged errors)
[2025-07-27 13:56:31] 2025-07-27 17:55:59,235 | INFO     | overall cleanup function is called
[2025-07-27 13:56:31] 2025-07-27 17:56:00,244 | INFO     | --- collectZombieJob: --- 10, [464468]
[2025-07-27 13:56:31] 2025-07-27 17:56:00,244 | INFO     | zombie collector waiting for pid 464468
[2025-07-27 13:56:31] 2025-07-27 17:56:00,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:56:31] 2025-07-27 17:56:00,244 | INFO     | collected zombie processes
[2025-07-27 13:56:31] 2025-07-27 17:56:00,244 | INFO     | will attempt to kill all subprocesses of pid=464468
[2025-07-27 13:56:31] 2025-07-27 17:56:00,893 | INFO     | process IDs to be killed: [464468] (in reverse order)
[2025-07-27 13:56:31] 2025-07-27 17:56:01,058 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:56:31] 2025-07-27 17:56:01,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:56:31] 2025-07-27 17:56:01,120 | INFO     | did not find any defunct processes belonging to 464468
[2025-07-27 13:56:31] 2025-07-27 17:56:01,147 | INFO     | did not find any defunct processes belonging to 464468
[2025-07-27 13:56:31] 2025-07-27 17:56:01,148 | INFO     | ready for new job
[2025-07-27 13:56:31] 2025-07-27 17:56:01,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:56:31] 2025-07-27 17:56:01,153 | INFO     | ***************************************
[2025-07-27 13:56:31] 2025-07-27 17:56:01,153 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:56:31] 2025-07-27 17:56:01,153 | INFO     | ***************************************
[2025-07-27 13:56:31] 2025-07-27 17:56:01,153 | INFO     | 
[2025-07-27 13:56:31] 2025-07-27 17:56:01,173 | INFO     | architecture information:
[2025-07-27 13:56:31] 2025-07-27 17:56:01,174 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:56:31] 2025-07-27 17:56:01,198 | INFO     | cat /etc/os-release:
[2025-07-27 13:56:31] NAME="CentOS Linux"
[2025-07-27 13:56:31] VERSION="7 (Core)"
[2025-07-27 13:56:31] ID="centos"
[2025-07-27 13:56:31] ID_LIKE="rhel fedora"
[2025-07-27 13:56:31] VERSION_ID="7"
[2025-07-27 13:56:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:56:31] ANSI_COLOR="0;31"
[2025-07-27 13:56:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:56:31] HOME_URL="https://www.centos.org/"
[2025-07-27 13:56:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:56:31] 
[2025-07-27 13:56:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:56:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:56:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:56:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:56:31] 
[2025-07-27 13:56:31] 2025-07-27 17:56:01,198 | INFO     | ***************************************
[2025-07-27 13:56:31] 2025-07-27 17:56:01,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 13:56:31] 2025-07-27 17:56:01,735 | INFO     | sufficient remaining disk space (172254822400 B)
[2025-07-27 13:56:31] 2025-07-27 17:56:01,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:56:31] 2025-07-27 17:56:01,736 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:56:31] 2025-07-27 17:56:01,736 | INFO     | update_server=False
[2025-07-27 13:56:31] 2025-07-27 17:56:01,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:56:31] 2025-07-27 17:56:02,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:56:31] 2025-07-27 17:56:02,117 | INFO     | aborting loop
[2025-07-27 13:56:31] 2025-07-27 17:56:02,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:56:31] 2025-07-27 17:56:02,572 | INFO     | all data control threads have been joined
[2025-07-27 13:56:31] 2025-07-27 17:56:02,673 | INFO     | all payload control threads have been joined
[2025-07-27 13:56:31] 2025-07-27 17:56:02,741 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:02,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:56:31] 2025-07-27 17:56:02,793 | INFO     | all job control threads have been joined
[2025-07-27 13:56:31] 2025-07-27 17:56:02,917 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,021 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,123 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,355 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,387 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,578 | INFO     | [data] control thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,610 | INFO     | [job] validate thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,681 | INFO     | [payload] control thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,799 | INFO     | [job] control thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,827 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:03,880 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:04,127 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:04,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:56:31] 2025-07-27 17:56:05,200 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:06,800 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:12,376 | INFO     | job.realtimelogging is not enabled
[2025-07-27 13:56:31] 2025-07-27 17:56:13,383 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:56:31] 2025-07-27 17:56:13,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140585034635072)>', '<ExcThread(monitor, started 140584413034240)>']
[2025-07-27 13:56:31] 2025-07-27 17:56:18,953 | INFO     | all workflow threads have been joined
[2025-07-27 13:56:31] 2025-07-27 17:56:18,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:56:31] 2025-07-27 17:56:18,955 | INFO     | traces error code: 0
[2025-07-27 13:56:31] 2025-07-27 17:56:18,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:56:31] 2025-07-27 17:56:31,110 | INFO     | PID=446587 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 13:56:31] 2025-07-27 17:56:31,112 | INFO     | .. there are 28 such processes running
[2025-07-27 13:56:31] 2025-07-27 17:56:31,113 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:56:31] 2025-07-27 17:56:31,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:56:31] 2025-07-27 17:56:31,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:56:31] 2025-07-27 17:56:31,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:56:31] 2025-07-27 17:56:31,113 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 13:56:31] 2025-07-27 17:56:31,113 | INFO     | [monitor] control thread has ended
[2025-07-27 13:56:31] 2025-07-27 17:56:31,327 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:56:31] 2025-07-27 17:56:31,331 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:56:31] 2025-07-27 17:56:31,355 [wrapper] pilotpid: 446587
[2025-07-27 13:56:31] 2025-07-27 17:56:31,359 [wrapper] Pilot exit status: 0
[2025-07-27 13:56:31] 2025-07-27 17:56:31,413 [wrapper] pandaids: 6745100158
[2025-07-27 13:56:31] 2025-07-27 17:56:31,569 [wrapper] cleanup supervisor_pilot 1067094 446588
[2025-07-27 13:56:31] 2025-07-27 17:56:31,579 [wrapper] Test setup, not cleaning
[2025-07-27 13:56:31] 2025-07-27 17:56:31,589 [wrapper] apfmon messages muted
[2025-07-27 13:56:31] 2025-07-27 17:56:31,598 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:56:31] 2025-07-27 17:56:31,605 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:56:31]  *** Error codes and diagnostics ***
[2025-07-27 13:56:31]     "exeErrorCode": 0,
[2025-07-27 13:56:31]     "exeErrorDiag": "",
[2025-07-27 13:56:31]     "pilotErrorCode": 0,
[2025-07-27 13:56:31]     "pilotErrorDiag": "",
[2025-07-27 13:56:31]  *** Listing of results directory ***
[2025-07-27 13:56:31] total 345596
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 04:04 pilot3.tar.gz
[2025-07-27 13:56:31] -rwx------. 1 boincer umatlas     36292 Jul 26 04:20 runpilot2-wrapper.sh
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 04:20 queuedata.json
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:56:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:00 run_atlas
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:00 job.xml
[2025-07-27 13:56:31] -rw-r--r--. 2 boincer umatlas 143810170 Jul 27 13:00 EVNT.45743347._001972.pool.root.1
[2025-07-27 13:56:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:00 start_atlas.sh
[2025-07-27 13:56:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:00 shared
[2025-07-27 13:56:31] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 13:00 input.tar.gz
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:00 boinc_lockfile
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 13:00 pandaJob.out
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas    980125 Jul 27 13:00 agis_schedconf.cvmfs.json
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:01 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:56:31] drwx------. 4 boincer umatlas      4096 Jul 27 13:01 pilot3
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas 204956624 Jul 27 13:55 HITS.45743349._034778.pool.root.1
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas       529 Jul 27 13:55 boinc_task_state.xml
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas      1035 Jul 27 13:55 memory_monitor_summary.json
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas    285074 Jul 27 13:55 log.45743349._034778.job.log.tgz.1
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas      7162 Jul 27 13:55 init_data.xml
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas      7774 Jul 27 13:55 heartbeat.json
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas        27 Jul 27 13:56 wrapper_checkpoint.txt
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 13:56 boinc_mmap_file
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas        95 Jul 27 13:56 pilot_heartbeat.json
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas       892 Jul 27 13:56 pilotlog.txt
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas    338795 Jul 27 13:56 log.45743349._034778.job.log.1
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas       357 Jul 27 13:56 output.list
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas       620 Jul 27 13:56 runtime_log
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas    645120 Jul 27 13:56 result.tar.gz
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 13:56 runtime_log.err
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas       650 Jul 27 13:56 AazNDmfJpz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVbRLDmmn0WJo.diag
[2025-07-27 13:56:31] -rw-r--r--. 1 boincer umatlas     22004 Jul 27 13:56 stderr.txt
[2025-07-27 13:56:31] HITS file was successfully produced:
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas 204956624 Jul 27 13:55 shared/HITS.pool.root.1
[2025-07-27 13:56:31]  *** Contents of shared directory: ***
[2025-07-27 13:56:31] total 341780
[2025-07-27 13:56:31] -rw-r--r--. 2 boincer umatlas 143810170 Jul 27 13:00 ATLAS.root_0
[2025-07-27 13:56:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:00 start_atlas.sh
[2025-07-27 13:56:31] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 13:00 input.tar.gz
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas 204956624 Jul 27 13:55 HITS.pool.root.1
[2025-07-27 13:56:31] -rw-------. 1 boincer umatlas    645120 Jul 27 13:56 result.tar.gz
13:56:33 (437844): run_atlas exited; CPU time 24417.662385
13:56:33 (437844): called boinc_finish(0)

</stderr_txt>
]]>

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