Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:52:56 (2544118): wrapper (7.7.26015): starting
12:52:56 (2544118): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 12:52:56] Arguments: --nthreads 8
[2025-07-27 12:52:56] Threads: 8
[2025-07-27 12:52:56] Checking for CVMFS
[2025-07-27 12:52:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:52:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:52:56] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:52:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:52:57] 2.12.6.0 3144059 18628 345096 148818 1 338 28239274 40960001 10283 16776704 0 60891348 99.758 76521926 28541 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 12:52:57] CVMFS is ok
[2025-07-27 12:52:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:52:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:52:57] Further information can be found at the LHC@home message board.
[2025-07-27 12:52:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:52:57] Checking for apptainer binary...
[2025-07-27 12:52:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:52:57] Running /usr/bin/apptainer --version
[2025-07-27 12:52:57] apptainer version 1.4.1-1.el9
[2025-07-27 12:52:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:52:57] c7-11-15.aglt2.org
[2025-07-27 12:52:57] apptainer works
[2025-07-27 12:52:57] Set ATHENA_PROC_NUMBER=8
[2025-07-27 12:52:57] Set ATHENA_CORE_NUMBER=8
[2025-07-27 12:52:57] Starting ATLAS job with PandaID=6747413265
[2025-07-27 12:52:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:28:03]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:28:03]  protocol_id=None
[2025-07-27 14:28:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 14:28:03]  replicas=None
[2025-07-27 14:28:03]  scope=mc23_13p6TeV
[2025-07-27 14:28:03]  status=None
[2025-07-27 14:28:03]  status_code=0
[2025-07-27 14:28:03]  storage_token=
[2025-07-27 14:28:03]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6747413265/log.45743349._050039.job.log.tgz.1
[2025-07-27 14:28:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/25/log.45743349._050039.job.log.tgz.1
[2025-07-27 14:28:03]  workdir=None
[2025-07-27 14:28:03] ]
[2025-07-27 14:28:03] 2025-07-27 18:27:22,025 | INFO     | transferring file log.45743349._050039.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6747413265/log.45743349._050039.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:28:03] 2025-07-27 18:27:22,025 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6747413265/log.45743349._050039.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._050039.job
[2025-07-27 14:28:03] 2025-07-27 18:27:22,053 | INFO     | adding to output.list: log.45743349._050039.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/25/log.45743349._050039.job.log.tg
[2025-07-27 14:28:03] 2025-07-27 18:27:22,054 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:28:03] 2025-07-27 18:27:22,054 | INFO     | summary of transferred files:
[2025-07-27 14:28:03] 2025-07-27 18:27:22,054 | INFO     |  -- lfn=log.45743349._050039.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:28:03] 2025-07-27 18:27:22,055 | INFO     | stage-out finished correctly
[2025-07-27 14:28:03] 2025-07-27 18:27:22,612 | INFO     | PID=2547899 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:28:03] 2025-07-27 18:27:22,612 | INFO     | .. there are 12 such processes running
[2025-07-27 14:28:03] 2025-07-27 18:27:25,247 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:28:03] 2025-07-27 18:27:25,325 | INFO     | job 6747413265 has state=finished
[2025-07-27 14:28:03] 2025-07-27 18:27:25,325 | INFO     | preparing for final server update for job 6747413265 in state='finished'
[2025-07-27 14:28:03] 2025-07-27 18:27:25,325 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:28:03] 2025-07-27 18:27:25,326 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:28:03] 2025-07-27 18:27:25,326 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:28:03] 2025-07-27 18:27:25,326 | INFO     | job 6747413265 has finished - writing final server update
[2025-07-27 14:28:03] 2025-07-27 18:27:25,326 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:28:03] 2025-07-27 18:27:25,330 | INFO     | executing command: lscpu
[2025-07-27 14:28:03] 2025-07-27 18:27:25,397 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:28:03] 2025-07-27 18:27:27,007 | WARNING  | process 2556916 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 14:28:03] 2025-07-27 18:27:27,008 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747413265/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:28:03] 2025-07-27 18:27:27,298 | INFO     | number of running child processes to parent process 2556916: 1
[2025-07-27 14:28:03] 2025-07-27 18:27:27,298 | INFO     | maximum number of monitored processes: 6
[2025-07-27 14:28:03] 2025-07-27 18:27:29,803 | INFO     | monitor loop #406: job 0:6747413265 is in state 'finished'
[2025-07-27 14:28:03] 2025-07-27 18:27:29,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,238 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 14:28:03] 2025-07-27 18:27:31,244 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3276.5812031250002
[2025-07-27 14:28:03] 2025-07-27 18:27:31,254 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6747413265/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,255 | INFO     | extracted standard info from prmon json
[2025-07-27 14:28:03] 2025-07-27 18:27:31,255 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:28:03] 2025-07-27 18:27:31,255 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:28:03] 2025-07-27 18:27:31,255 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:28:03] 2025-07-27 18:27:31,255 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:28:03] 2025-07-27 18:27:31,257 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:28:03] 2025-07-27 18:27:31,257 | INFO     | sum of square deviations: 197203697.5
[2025-07-27 14:28:03] 2025-07-27 18:27:31,257 | INFO     | sum of deviations: -5580658871.000001
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | mean x: 1753638109.5
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | mean y: 2218687.8139534886
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | -- intersect: 49628347388.08768
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | intersect: 49628347388.08768
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | chi2: 0.06454984745729415
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | -- intersect: 49628347388.08768
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | current memory leak: -28.30 B/s (using 86 data points, chi2=0.06)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | could have reported an average CPU frequency of 3259 MHz (7 samples)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,258 | INFO     | ..............................
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . Timing measurements:
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . get job = 0 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . initial setup = 3 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . payload setup = 5 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . stage-in = 0 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . payload execution = 5629 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . stage-out = 0 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | . log creation = 0 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,259 | INFO     | ..............................
[2025-07-27 14:28:03] 2025-07-27 18:27:31,336 | INFO     | 
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | job summary report
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | --------------------------------------------------
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | PanDA job id: 6747413265
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | task id: 45743349
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | errors: (none)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | pilot state: finished 
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | transexitcode: 0
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | exeerrorcode: 0
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | exeerrordiag: 
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | exitcode: 0
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | exitmsg: OK
[2025-07-27 14:28:03] 2025-07-27 18:27:31,337 | INFO     | cpuconsumptiontime: 36906 s
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | nevents: 400
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | neventsw: 0
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | pid: 2556916
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | pgrp: 2556916
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | corecount: 8
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | event service: False
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | sizes: {0: 2397424, 4: 2397686, 11: 2397714, 5639: 2424478, 5640: 2433476, 5643: 2433532, 5649: 2433854}
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | --------------------------------------------------
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | 
[2025-07-27 14:28:03] 2025-07-27 18:27:31,338 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,366 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:28:03] 2025-07-27 18:27:31,367 | INFO     | job 6747413265 has completed (purged errors)
[2025-07-27 14:28:03] 2025-07-27 18:27:31,368 | INFO     | overall cleanup function is called
[2025-07-27 14:28:03] 2025-07-27 18:27:32,376 | INFO     | --- collectZombieJob: --- 10, [2556916]
[2025-07-27 14:28:03] 2025-07-27 18:27:32,376 | INFO     | zombie collector waiting for pid 2556916
[2025-07-27 14:28:03] 2025-07-27 18:27:32,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:28:03] 2025-07-27 18:27:32,377 | INFO     | collected zombie processes
[2025-07-27 14:28:03] 2025-07-27 18:27:32,377 | INFO     | will attempt to kill all subprocesses of pid=2556916
[2025-07-27 14:28:03] 2025-07-27 18:27:32,657 | INFO     | process IDs to be killed: [2556916] (in reverse order)
[2025-07-27 14:28:03] 2025-07-27 18:27:32,789 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:28:03] 2025-07-27 18:27:32,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:28:03] 2025-07-27 18:27:32,806 | INFO     | did not find any defunct processes belonging to 2556916
[2025-07-27 14:28:03] 2025-07-27 18:27:32,820 | INFO     | did not find any defunct processes belonging to 2556916
[2025-07-27 14:28:03] 2025-07-27 18:27:32,820 | INFO     | ready for new job
[2025-07-27 14:28:03] 2025-07-27 18:27:32,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:28:03] 2025-07-27 18:27:32,822 | INFO     | ***************************************
[2025-07-27 14:28:03] 2025-07-27 18:27:32,822 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:28:03] 2025-07-27 18:27:32,822 | INFO     | ***************************************
[2025-07-27 14:28:03] 2025-07-27 18:27:32,822 | INFO     | 
[2025-07-27 14:28:03] 2025-07-27 18:27:32,838 | INFO     | architecture information:
[2025-07-27 14:28:03] 2025-07-27 18:27:32,839 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:28:03] 2025-07-27 18:27:32,858 | INFO     | cat /etc/os-release:
[2025-07-27 14:28:03] NAME="CentOS Linux"
[2025-07-27 14:28:03] VERSION="7 (Core)"
[2025-07-27 14:28:03] ID="centos"
[2025-07-27 14:28:03] ID_LIKE="rhel fedora"
[2025-07-27 14:28:03] VERSION_ID="7"
[2025-07-27 14:28:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:28:03] ANSI_COLOR="0;31"
[2025-07-27 14:28:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:28:03] HOME_URL="https://www.centos.org/"
[2025-07-27 14:28:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:28:03] 
[2025-07-27 14:28:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:28:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:28:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:28:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:28:03] 
[2025-07-27 14:28:03] 2025-07-27 18:27:32,858 | INFO     | ***************************************
[2025-07-27 14:28:03] 2025-07-27 18:27:33,361 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 14:28:03] 2025-07-27 18:27:33,389 | INFO     | sufficient remaining disk space (85930803200 B)
[2025-07-27 14:28:03] 2025-07-27 18:27:33,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:28:03] 2025-07-27 18:27:33,389 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:28:03] 2025-07-27 18:27:33,389 | INFO     | update_server=False
[2025-07-27 14:28:03] 2025-07-27 18:27:33,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:28:03] 2025-07-27 18:27:33,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:28:03] 2025-07-27 18:27:33,390 | INFO     | aborting loop
[2025-07-27 14:28:03] 2025-07-27 18:27:33,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:28:03] 2025-07-27 18:27:33,802 | INFO     | all data control threads have been joined
[2025-07-27 14:28:03] 2025-07-27 18:27:34,267 | INFO     | all job control threads have been joined
[2025-07-27 14:28:03] 2025-07-27 18:27:34,394 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:34,395 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:34,808 | INFO     | [data] control thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:34,837 | INFO     | all payload control threads have been joined
[2025-07-27 14:28:03] 2025-07-27 18:27:35,036 | INFO     | [job] validate thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,138 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,272 | INFO     | [job] control thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,358 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,375 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,397 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,544 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,665 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,843 | INFO     | [payload] control thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:35,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:28:03] 2025-07-27 18:27:35,954 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:36,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:28:03] 2025-07-27 18:27:37,354 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:39,861 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:43,659 | INFO     | job.realtimelogging is not enabled
[2025-07-27 14:28:03] 2025-07-27 18:27:44,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:28:03] 2025-07-27 18:27:45,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803912750912)>', '<ExcThread(monitor, started 139803559438080)>']
[2025-07-27 14:28:03] 2025-07-27 18:27:50,168 | INFO     | all workflow threads have been joined
[2025-07-27 14:28:03] 2025-07-27 18:27:50,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:28:03] 2025-07-27 18:27:50,168 | INFO     | traces error code: 0
[2025-07-27 14:28:03] 2025-07-27 18:27:50,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | INFO     | PID=2547899 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | INFO     | .. there are 12 such processes running
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:28:03] 2025-07-27 18:28:03,089 | INFO     | [monitor] control thread has ended
[2025-07-27 14:28:03] 2025-07-27 18:28:03,233 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:28:03] 2025-07-27 18:28:03,236 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:28:03] 2025-07-27 18:28:03,239 [wrapper] pilotpid: 2547899
[2025-07-27 14:28:03] 2025-07-27 18:28:03,241 [wrapper] Pilot exit status: 0
[2025-07-27 14:28:03] 2025-07-27 18:28:03,260 [wrapper] pandaids: 6747413265
[2025-07-27 14:28:03] 2025-07-27 18:28:03,351 [wrapper] cleanup supervisor_pilot 2955017 2547900
[2025-07-27 14:28:03] 2025-07-27 18:28:03,358 [wrapper] Test setup, not cleaning
[2025-07-27 14:28:03] 2025-07-27 18:28:03,363 [wrapper] apfmon messages muted
[2025-07-27 14:28:03] 2025-07-27 18:28:03,368 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:28:03] 2025-07-27 18:28:03,371 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:28:03]  *** Error codes and diagnostics ***
[2025-07-27 14:28:03]     "exeErrorCode": 0,
[2025-07-27 14:28:03]     "exeErrorDiag": "",
[2025-07-27 14:28:03]     "pilotErrorCode": 0,
[2025-07-27 14:28:03]     "pilotErrorDiag": "",
[2025-07-27 14:28:03]  *** Listing of results directory ***
[2025-07-27 14:28:03] total 351932
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 10:11 pilot3.tar.gz
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 10:25 queuedata.json
[2025-07-27 14:28:03] -rwx------. 1 boincer umatlas     36292 Jul 27 10:26 runpilot2-wrapper.sh
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:28:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:52 run_atlas
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:52 job.xml
[2025-07-27 14:28:03] -rw-r--r--. 2 boincer umatlas 146314960 Jul 27 12:52 EVNT.45743347._002782.pool.root.1
[2025-07-27 14:28:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:52 start_atlas.sh
[2025-07-27 14:28:03] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:52 shared
[2025-07-27 14:28:03] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 12:52 input.tar.gz
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:52 boinc_lockfile
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 12:52 pandaJob.out
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas    980125 Jul 27 12:53 agis_schedconf.cvmfs.json
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:53 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:28:03] drwx------. 4 boincer umatlas      4096 Jul 27 12:53 pilot3
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas 208471178 Jul 27 14:26 HITS.45743349._050039.pool.root.1
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas       529 Jul 27 14:26 boinc_task_state.xml
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas        95 Jul 27 14:27 pilot_heartbeat.json
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas      1042 Jul 27 14:27 memory_monitor_summary.json
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas    314797 Jul 27 14:27 log.45743349._050039.job.log.tgz.1
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas      7767 Jul 27 14:27 heartbeat.json
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas      6896 Jul 27 14:27 init_data.xml
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:27 boinc_mmap_file
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:27 wrapper_checkpoint.txt
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas       823 Jul 27 14:28 pilotlog.txt
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas    543635 Jul 27 14:28 log.45743349._050039.job.log.1
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas       357 Jul 27 14:28 output.list
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:28 runtime_log
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas    880640 Jul 27 14:28 result.tar.gz
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas      8660 Jul 27 14:28 runtime_log.err
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas       653 Jul 27 14:28 jWXKDmkVH07n9Rq4apOajLDm4fhM0noT9bVof3QYDm3f2KDmV96xBo.diag
[2025-07-27 14:28:03] -rw-r--r--. 1 boincer umatlas     21894 Jul 27 14:28 stderr.txt
[2025-07-27 14:28:03] HITS file was successfully produced:
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas 208471178 Jul 27 14:26 shared/HITS.pool.root.1
[2025-07-27 14:28:03]  *** Contents of shared directory: ***
[2025-07-27 14:28:03] total 347888
[2025-07-27 14:28:03] -rw-r--r--. 2 boincer umatlas 146314960 Jul 27 12:52 ATLAS.root_0
[2025-07-27 14:28:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:52 start_atlas.sh
[2025-07-27 14:28:03] -rw-r--r--. 2 boincer umatlas    542899 Jul 27 12:52 input.tar.gz
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas 208471178 Jul 27 14:26 HITS.pool.root.1
[2025-07-27 14:28:03] -rw-------. 1 boincer umatlas    880640 Jul 27 14:28 result.tar.gz
14:28:05 (2544118): run_atlas exited; CPU time 36981.839260
14:28:05 (2544118): called boinc_finish(0)

</stderr_txt>
]]>

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