Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
06:03:17 (1753967): wrapper (7.7.26015): starting
06:03:17 (1753967): wrapper: running run_atlas (--nthreads 4)
[2025-07-29 06:03:17] Arguments: --nthreads 4
[2025-07-29 06:03:17] Threads: 4
[2025-07-29 06:03:17] Checking for CVMFS
[2025-07-29 06:03:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 06:03:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 06:03:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 06:03:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 06:03:17] 2.13.0.0 1642395 94 50792 148875 1 188 2984863 4096001 2766 130560 0 300550 99.987 6942 117 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-29 06:03:17] CVMFS is ok
[2025-07-29 06:03:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 06:03:17] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-29 06:03:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-29 06:03:17] Further information can be found at the LHC@home message board.
[2025-07-29 06:03:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 06:03:17] Checking for apptainer binary...
[2025-07-29 06:03:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 06:03:17] Running /usr/bin/apptainer --version
[2025-07-29 06:03:17] apptainer version 1.2.3
[2025-07-29 06:03:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 06:03:17] Ryzen-7-7700-Zen4-Deb12
[2025-07-29 06:03:17] apptainer works
[2025-07-29 06:03:17] Set ATHENA_PROC_NUMBER=4
[2025-07-29 06:03:17] Set ATHENA_CORE_NUMBER=4
[2025-07-29 06:03:17] Starting ATLAS job with PandaID=6747412985
[2025-07-29 06:03:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 07:26:58]  *** The last 200 lines of the pilot log: ***
[2025-07-29 07:26:58]  lfn=log.45743349._049868.job.log.tgz.1
[2025-07-29 07:26:58]  mtime=0
[2025-07-29 07:26:58]  protocol_id=None
[2025-07-29 07:26:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 07:26:58]  replicas=None
[2025-07-29 07:26:58]  scope=mc23_13p6TeV
[2025-07-29 07:26:58]  status=None
[2025-07-29 07:26:58]  status_code=0
[2025-07-29 07:26:58]  storage_token=
[2025-07-29 07:26:58]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6747412985/log.45743349._049868.job.log.tgz.1
[2025-07-29 07:26:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/97/log.45743349._049868.job.log.tgz.1
[2025-07-29 07:26:58]  workdir=None
[2025-07-29 07:26:58] ]
[2025-07-29 07:26:58] 2025-07-29 05:26:18,007 | INFO     | transferring file log.45743349._049868.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6747412985/log.45743349._049868.job.log.tgz.1 to /var/lib/boinc
[2025-07-29 07:26:58] 2025-07-29 05:26:18,007 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6747412985/log.45743349._049868.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.457433
[2025-07-29 07:26:58] 2025-07-29 05:26:18,030 | INFO     | adding to output.list: log.45743349._049868.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/97/log.45743349._049868.job.log.tg
[2025-07-29 07:26:58] 2025-07-29 05:26:18,031 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 07:26:58] 2025-07-29 05:26:18,031 | INFO     | summary of transferred files:
[2025-07-29 07:26:58] 2025-07-29 05:26:18,031 | INFO     |  -- lfn=log.45743349._049868.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 07:26:58] 2025-07-29 05:26:18,031 | INFO     | stage-out finished correctly
[2025-07-29 07:26:58] 2025-07-29 05:26:20,307 | INFO     | monitor loop #372: job 0:6747412985 is in state 'finished'
[2025-07-29 07:26:58] 2025-07-29 05:26:20,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 07:26:58] 2025-07-29 05:26:20,834 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 07:26:58] 2025-07-29 05:26:22,811 | INFO     | monitor loop #373: job 0:6747412985 is in state 'finished'
[2025-07-29 07:26:58] 2025-07-29 05:26:22,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 07:26:58] 2025-07-29 05:26:23,679 | INFO     | job 6747412985 has state=finished
[2025-07-29 07:26:58] 2025-07-29 05:26:23,680 | INFO     | preparing for final server update for job 6747412985 in state='finished'
[2025-07-29 07:26:58] 2025-07-29 05:26:23,680 | INFO     | this job has now completed (state=finished)
[2025-07-29 07:26:58] 2025-07-29 05:26:23,680 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 07:26:58] 2025-07-29 05:26:23,680 | INFO     | log transfer has been attempted: DONE
[2025-07-29 07:26:58] 2025-07-29 05:26:23,680 | INFO     | job 6747412985 has finished - writing final server update
[2025-07-29 07:26:58] 2025-07-29 05:26:23,680 | INFO     | total number of processed events: 400 (read)
[2025-07-29 07:26:58] 2025-07-29 05:26:23,681 | INFO     | executing command: lscpu
[2025-07-29 07:26:58] 2025-07-29 05:26:23,694 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 07:26:58] 2025-07-29 05:26:25,314 | INFO     | monitor loop #374: job 0:6747412985 is in state 'finished'
[2025-07-29 07:26:58] 2025-07-29 05:26:25,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,549 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-29 07:26:58] 2025-07-29 05:26:25,550 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4865.0075
[2025-07-29 07:26:58] 2025-07-29 05:26:25,552 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6747412985/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,552 | INFO     | extracted standard info from prmon json
[2025-07-29 07:26:58] 2025-07-29 05:26:25,552 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 07:26:58] 2025-07-29 05:26:25,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 07:26:58] 2025-07-29 05:26:25,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 07:26:58] 2025-07-29 05:26:25,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 07:26:58] 2025-07-29 05:26:25,553 | INFO     | fitting pss+swap vs Time
[2025-07-29 07:26:58] 2025-07-29 05:26:25,553 | INFO     | sum of square deviations: 130793150.0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,553 | INFO     | sum of deviations: -1425645762.0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,553 | INFO     | mean x: 1753764381.0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | mean y: 2361898.7066666665
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | -- intersect: 19118399377.11592
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | intersect: 19118399377.11592
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | chi2: 0.015172234776276881
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | -- intersect: 19118399377.11592
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | current memory leak: -10.90 B/s (using 75 data points, chi2=0.02)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | could have reported an average CPU frequency of 4838 MHz (6 samples)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | ..............................
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . Timing measurements:
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . get job = 0 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . initial setup = 1 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . payload setup = 2 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . stage-in = 0 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . payload execution = 4957 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . stage-out = 0 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | . log creation = 0 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,554 | INFO     | ..............................
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | 
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | job summary report
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | --------------------------------------------------
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | PanDA job id: 6747412985
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | task id: 45743349
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | errors: (none)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | pilot state: finished 
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | transexitcode: 0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | exeerrorcode: 0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | exeerrordiag: 
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | exitcode: 0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | exitmsg: OK
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | cpuconsumptiontime: 19115 s
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | nevents: 400
[2025-07-29 07:26:58] 2025-07-29 05:26:25,610 | INFO     | neventsw: 0
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | pid: 1764163
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | pgrp: 1764163
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | corecount: 4
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | event service: False
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | sizes: {0: 2391916, 2: 2392178, 11: 2392206, 4964: 2427612, 4967: 2427612, 4972: 2427806}
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | --------------------------------------------------
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | 
[2025-07-29 07:26:58] 2025-07-29 05:26:25,611 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-07-29 07:26:58] 2025-07-29 05:26:25,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | job 6747412985 has completed (purged errors)
[2025-07-29 07:26:58] 2025-07-29 05:26:25,622 | INFO     | overall cleanup function is called
[2025-07-29 07:26:58] 2025-07-29 05:26:26,627 | INFO     | --- collectZombieJob: --- 10, [1764163]
[2025-07-29 07:26:58] 2025-07-29 05:26:26,627 | INFO     | zombie collector waiting for pid 1764163
[2025-07-29 07:26:58] 2025-07-29 05:26:26,627 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 07:26:58] 2025-07-29 05:26:26,628 | INFO     | collected zombie processes
[2025-07-29 07:26:58] 2025-07-29 05:26:26,628 | INFO     | will attempt to kill all subprocesses of pid=1764163
[2025-07-29 07:26:58] 2025-07-29 05:26:26,672 | INFO     | process IDs to be killed: [1764163] (in reverse order)
[2025-07-29 07:26:58] 2025-07-29 05:26:26,699 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 07:26:58] 2025-07-29 05:26:26,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 07:26:58] 2025-07-29 05:26:26,700 | INFO     | did not find any defunct processes belonging to 1764163
[2025-07-29 07:26:58] 2025-07-29 05:26:26,702 | INFO     | did not find any defunct processes belonging to 1764163
[2025-07-29 07:26:58] 2025-07-29 05:26:26,702 | INFO     | ready for new job
[2025-07-29 07:26:58] 2025-07-29 05:26:26,702 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 07:26:58] 2025-07-29 05:26:26,702 | INFO     | ***************************************
[2025-07-29 07:26:58] 2025-07-29 05:26:26,703 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 07:26:58] 2025-07-29 05:26:26,703 | INFO     | ***************************************
[2025-07-29 07:26:58] 2025-07-29 05:26:26,703 | INFO     | 
[2025-07-29 07:26:58] 2025-07-29 05:26:26,703 | INFO     | architecture information:
[2025-07-29 07:26:58] 2025-07-29 05:26:26,703 | INFO     | executing command: cat /etc/os-release
[2025-07-29 07:26:58] 2025-07-29 05:26:26,712 | INFO     | cat /etc/os-release:
[2025-07-29 07:26:58] NAME="CentOS Linux"
[2025-07-29 07:26:58] VERSION="7 (Core)"
[2025-07-29 07:26:58] ID="centos"
[2025-07-29 07:26:58] ID_LIKE="rhel fedora"
[2025-07-29 07:26:58] VERSION_ID="7"
[2025-07-29 07:26:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 07:26:58] ANSI_COLOR="0;31"
[2025-07-29 07:26:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 07:26:58] HOME_URL="https://www.centos.org/"
[2025-07-29 07:26:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 07:26:58] 
[2025-07-29 07:26:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 07:26:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 07:26:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 07:26:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 07:26:58] 
[2025-07-29 07:26:58] 2025-07-29 05:26:26,712 | INFO     | ***************************************
[2025-07-29 07:26:58] 2025-07-29 05:26:27,214 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-07-29 07:26:58] 2025-07-29 05:26:27,223 | INFO     | sufficient remaining disk space (884867072000 B)
[2025-07-29 07:26:58] 2025-07-29 05:26:27,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 07:26:58] 2025-07-29 05:26:27,223 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 07:26:58] 2025-07-29 05:26:27,223 | INFO     | update_server=False
[2025-07-29 07:26:58] 2025-07-29 05:26:27,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 07:26:58] 2025-07-29 05:26:27,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 07:26:58] 2025-07-29 05:26:27,224 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 07:26:58] 2025-07-29 05:26:27,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 07:26:58] 2025-07-29 05:26:27,224 | INFO     | aborting loop
[2025-07-29 07:26:58] 2025-07-29 05:26:27,922 | INFO     | all data control threads have been joined
[2025-07-29 07:26:58] 2025-07-29 05:26:28,103 | INFO     | all job control threads have been joined
[2025-07-29 07:26:58] 2025-07-29 05:26:28,227 | INFO     | [job] queue monitor thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:28,228 | INFO     | [job] retrieve thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:28,228 | INFO     | [job] job monitor thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:28,259 | INFO     | [payload] failed_post thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:28,291 | INFO     | [payload] validate_post thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:28,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 07:26:58] 2025-07-29 05:26:28,631 | INFO     | all payload control threads have been joined
[2025-07-29 07:26:58] 2025-07-29 05:26:28,927 | INFO     | [data] control thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,107 | INFO     | [job] control thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,150 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,431 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,547 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,578 | INFO     | [data] copytool_in thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,603 | INFO     | [job] validate thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:29,635 | INFO     | [payload] control thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:30,603 | INFO     | [data] copytool_out thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:31,229 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:38,007 | INFO     | job.realtimelogging is not enabled
[2025-07-29 07:26:58] 2025-07-29 05:26:39,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 07:26:58] 2025-07-29 05:26:39,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538396231488)>', '<ExcThread(monitor, started 140537772373760)>']
[2025-07-29 07:26:58] 2025-07-29 05:26:44,323 | INFO     | all workflow threads have been joined
[2025-07-29 07:26:58] 2025-07-29 05:26:44,323 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 07:26:58] 2025-07-29 05:26:44,324 | INFO     | traces error code: 0
[2025-07-29 07:26:58] 2025-07-29 05:26:44,324 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 07:26:58] 2025-07-29 05:26:58,324 | INFO     | PID=1757650 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 07:26:58] 2025-07-29 05:26:58,324 | INFO     | .. there are 4 such processes running
[2025-07-29 07:26:58] 2025-07-29 05:26:58,324 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 07:26:58] 2025-07-29 05:26:58,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 07:26:58] 2025-07-29 05:26:58,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 07:26:58] 2025-07-29 05:26:58,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 07:26:58] 2025-07-29 05:26:58,325 | INFO     | [monitor] control thread has ended
[2025-07-29 07:26:58] 2025-07-29 05:26:58,390 [wrapper] ==== pilot stdout END ====
[2025-07-29 07:26:58] 2025-07-29 05:26:58,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 07:26:58] 2025-07-29 05:26:58,393 [wrapper] pilotpid: 1757650
[2025-07-29 07:26:58] 2025-07-29 05:26:58,394 [wrapper] Pilot exit status: 0
[2025-07-29 07:26:58] 2025-07-29 05:26:58,399 [wrapper] pandaids: 6747412985
[2025-07-29 07:26:58] 2025-07-29 05:26:58,413 [wrapper] cleanup supervisor_pilot 1828897 1757651
[2025-07-29 07:26:58] 2025-07-29 05:26:58,414 [wrapper] Test setup, not cleaning
[2025-07-29 07:26:58] 2025-07-29 05:26:58,415 [wrapper] apfmon messages muted
[2025-07-29 07:26:58] 2025-07-29 05:26:58,416 [wrapper] ==== wrapper stdout END ====
[2025-07-29 07:26:58] 2025-07-29 05:26:58,417 [wrapper] ==== wrapper stderr END ====
[2025-07-29 07:26:58]  *** Error codes and diagnostics ***
[2025-07-29 07:26:58]     "exeErrorCode": 0,
[2025-07-29 07:26:58]     "exeErrorDiag": "",
[2025-07-29 07:26:58]     "pilotErrorCode": 0,
[2025-07-29 07:26:58]     "pilotErrorDiag": "",
[2025-07-29 07:26:58]  *** Listing of results directory ***
[2025-07-29 07:26:58] total 343692
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc    530466 Jul 27 16:11 pilot3.tar.gz
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc      5112 Jul 27 16:18 queuedata.json
[2025-07-29 07:26:58] -rwx------ 1 boinc boinc     36292 Jul 27 16:18 runpilot2-wrapper.sh
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc       100 Jul 29 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 07:26:58] -rwxr-xr-x 1 boinc boinc      7986 Jul 29 06:03 run_atlas
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc       105 Jul 29 06:03 job.xml
[2025-07-29 07:26:58] -rw-r--r-- 2 boinc boinc     15095 Jul 29 06:03 start_atlas.sh
[2025-07-29 07:26:58] drwxrwx--x 2 boinc boinc      4096 Jul 29 06:03 shared
[2025-07-29 07:26:58] -rw-r--r-- 2 boinc boinc    542894 Jul 29 06:03 input.tar.gz
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc      9223 Jul 29 06:03 init_data.xml
[2025-07-29 07:26:58] -rw-r--r-- 2 boinc boinc 143981840 Jul 29 06:03 EVNT.45743347._002771.pool.root.1
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc         0 Jul 29 06:03 boinc_lockfile
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc      2563 Jul 29 06:03 pandaJob.out
[2025-07-29 07:26:58] -rw------- 1 boinc boinc    977332 Jul 29 06:03 agis_schedconf.cvmfs.json
[2025-07-29 07:26:58] -rw------- 1 boinc boinc   1589827 Jul 29 06:03 agis_ddmendpoints.agis.ALL.json
[2025-07-29 07:26:58] drwx------ 4 boinc boinc      4096 Jul 29 06:03 pilot3
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc       530 Jul 29 07:25 boinc_task_state.xml
[2025-07-29 07:26:58] -rw------- 1 boinc boinc 202601363 Jul 29 07:25 HITS.45743349._049868.pool.root.1
[2025-07-29 07:26:58] -rw------- 1 boinc boinc        95 Jul 29 07:26 pilot_heartbeat.json
[2025-07-29 07:26:58] -rw------- 1 boinc boinc      1019 Jul 29 07:26 memory_monitor_summary.json
[2025-07-29 07:26:58] -rw------- 1 boinc boinc    244917 Jul 29 07:26 log.45743349._049868.job.log.tgz.1
[2025-07-29 07:26:58] -rw------- 1 boinc boinc      7750 Jul 29 07:26 heartbeat.json
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc        27 Jul 29 07:26 wrapper_checkpoint.txt
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc      8192 Jul 29 07:26 boinc_mmap_file
[2025-07-29 07:26:58] -rw------- 1 boinc boinc       822 Jul 29 07:26 pilotlog.txt
[2025-07-29 07:26:58] -rw------- 1 boinc boinc    497864 Jul 29 07:26 log.45743349._049868.job.log.1
[2025-07-29 07:26:58] -rw------- 1 boinc boinc       357 Jul 29 07:26 output.list
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc       620 Jul 29 07:26 runtime_log
[2025-07-29 07:26:58] -rw------- 1 boinc boinc    757760 Jul 29 07:26 result.tar.gz
[2025-07-29 07:26:58] -rw------- 1 boinc boinc       655 Jul 29 07:26 z1fNDmlNH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeWVLDmAshTKo.diag
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc      8783 Jul 29 07:26 runtime_log.err
[2025-07-29 07:26:58] -rw-r--r-- 1 boinc boinc     21715 Jul 29 07:26 stderr.txt
[2025-07-29 07:26:58] HITS file was successfully produced:
[2025-07-29 07:26:58] -rw------- 1 boinc boinc 202601363 Jul 29 07:25 shared/HITS.pool.root.1
[2025-07-29 07:26:58]  *** Contents of shared directory: ***
[2025-07-29 07:26:58] total 339760
[2025-07-29 07:26:58] -rw-r--r-- 2 boinc boinc     15095 Jul 29 06:03 start_atlas.sh
[2025-07-29 07:26:58] -rw-r--r-- 2 boinc boinc    542894 Jul 29 06:03 input.tar.gz
[2025-07-29 07:26:58] -rw-r--r-- 2 boinc boinc 143981840 Jul 29 06:03 ATLAS.root_0
[2025-07-29 07:26:58] -rw------- 1 boinc boinc 202601363 Jul 29 07:25 HITS.pool.root.1
[2025-07-29 07:26:58] -rw------- 1 boinc boinc    757760 Jul 29 07:26 result.tar.gz
07:27:00 (1753967): run_atlas exited; CPU time 19136.664486
07:27:00 (1753967): called boinc_finish(0)

</stderr_txt>
]]>

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