Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:48:27 (1584105): wrapper (7.7.26015): starting
12:48:27 (1584105): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 12:48:27] Arguments: --nthreads 8
[2025-07-27 12:48:27] Threads: 8
[2025-07-27 12:48:27] Checking for CVMFS
[2025-07-27 12:48:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:48:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:48:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:48:29] 2.13.0.0 79137 24283 299420 148818 2 861 39919235 40960001 22753 16776704 1 199034618 99.657 216088679 28803 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 12:48:29] CVMFS is ok
[2025-07-27 12:48:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:48:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:48:29] Further information can be found at the LHC@home message board.
[2025-07-27 12:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:48:29] Checking for apptainer binary...
[2025-07-27 12:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:48:29] Running /usr/bin/apptainer --version
[2025-07-27 12:48:29] apptainer version 1.4.1-1.el9
[2025-07-27 12:48:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:48:29] c8-7-6.aglt2.org
[2025-07-27 12:48:29] apptainer works
[2025-07-27 12:48:29] Set ATHENA_PROC_NUMBER=8
[2025-07-27 12:48:29] Set ATHENA_CORE_NUMBER=8
[2025-07-27 12:48:29] Starting ATLAS job with PandaID=6741874052
[2025-07-27 12:48:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:31:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:31:09] 2025-07-27 18:29:44,667 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:31:09] 2025-07-27 18:29:44,899 | INFO     | job 6741874052 has state=finished
[2025-07-27 14:31:09] 2025-07-27 18:29:44,899 | INFO     | preparing for final server update for job 6741874052 in state='finished'
[2025-07-27 14:31:09] 2025-07-27 18:29:44,900 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:31:09] 2025-07-27 18:29:44,900 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:31:09] 2025-07-27 18:29:44,900 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:31:09] 2025-07-27 18:29:44,901 | INFO     | job 6741874052 has finished - writing final server update
[2025-07-27 14:31:09] 2025-07-27 18:29:44,901 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:31:09] 2025-07-27 18:29:44,902 | INFO     | executing command: lscpu
[2025-07-27 14:31:09] 2025-07-27 18:29:44,942 | INFO     | number of running child processes to parent process 1621801: 1
[2025-07-27 14:31:09] 2025-07-27 18:29:44,943 | INFO     | maximum number of monitored processes: 6
[2025-07-27 14:31:09] 2025-07-27 18:29:45,037 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:31:09] 2025-07-27 18:29:47,448 | INFO     | monitor loop #404: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:29:47,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:29:49,953 | INFO     | monitor loop #405: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:29:49,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:29:52,458 | INFO     | monitor loop #406: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:29:52,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:29:54,978 | INFO     | monitor loop #407: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:29:54,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:29:56,777 | INFO     | PID=1598682 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 14:31:09] 2025-07-27 18:29:56,777 | INFO     | .. there are 22 such processes running
[2025-07-27 14:31:09] 2025-07-27 18:29:57,509 | INFO     | monitor loop #408: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:29:57,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:00,039 | INFO     | monitor loop #409: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:30:00,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:02,544 | INFO     | monitor loop #410: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:30:02,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:05,056 | INFO     | monitor loop #411: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:30:05,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:07,562 | INFO     | monitor loop #412: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:30:07,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:07,824 | INFO     | 6071s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-27 14:31:09] 2025-07-27 18:30:10,067 | INFO     | monitor loop #413: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:30:10,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:12,573 | INFO     | monitor loop #414: job 0:6741874052 is in state 'finished'
[2025-07-27 14:31:09] 2025-07-27 18:30:12,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,235 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 14:31:09] 2025-07-27 18:30:14,240 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3699.3971015625
[2025-07-27 14:31:09] 2025-07-27 18:30:14,267 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6741874052/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,268 | INFO     | extracted standard info from prmon json
[2025-07-27 14:31:09] 2025-07-27 18:30:14,268 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:31:09] 2025-07-27 18:30:14,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:31:09] 2025-07-27 18:30:14,272 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:31:09] 2025-07-27 18:30:14,272 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:31:09] 2025-07-27 18:30:14,273 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | sum of square deviations: 233641590.0
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | sum of deviations: -921191317.0000002
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | mean x: 1753638069.0
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | mean y: 2237964.395604396
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | -- intersect: 6916401501.475827
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | intersect: 6916401501.475827
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | chi2: 0.08942716322453009
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | -- intersect: 6916401501.475827
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | current memory leak: -3.94 B/s (using 91 data points, chi2=0.09)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,274 | INFO     | could have reported an average CPU frequency of 3718 MHz (7 samples)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | ..............................
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . Timing measurements:
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . get job = 0 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . initial setup = 4 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . payload setup = 25 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . stage-in = 0 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . payload execution = 5970 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . stage-out = 3 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | . log creation = 0 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,275 | INFO     | ..............................
[2025-07-27 14:31:09] 2025-07-27 18:30:14,426 | INFO     | 
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | job summary report
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | --------------------------------------------------
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | PanDA job id: 6741874052
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | task id: 45697472
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | errors: (none)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | pilot state: finished 
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | transexitcode: 0
[2025-07-27 14:31:09] 2025-07-27 18:30:14,427 | INFO     | exeerrorcode: 0
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | exeerrordiag: 
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | exitcode: 0
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | exitmsg: OK
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | cpuconsumptiontime: 36499 s
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | nevents: 400
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | neventsw: 0
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | pid: 1621801
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | pgrp: 1621801
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | corecount: 8
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | event service: False
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | sizes: {0: 2397545, 1: 2397545, 11: 2397573, 19: 2397863, 22: 2397891, 5999: 2424827, 6000: 2424954, 6005: 2434064, 6035: 2434202}
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | --------------------------------------------------
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | 
[2025-07-27 14:31:09] 2025-07-27 18:30:14,428 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 14:31:09] 2025-07-27 18:30:14,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,602 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:31:09] 2025-07-27 18:30:14,602 | INFO     | job 6741874052 has completed (purged errors)
[2025-07-27 14:31:09] 2025-07-27 18:30:14,602 | INFO     | overall cleanup function is called
[2025-07-27 14:31:09] 2025-07-27 18:30:15,622 | INFO     | --- collectZombieJob: --- 10, [1621801]
[2025-07-27 14:31:09] 2025-07-27 18:30:15,622 | INFO     | zombie collector waiting for pid 1621801
[2025-07-27 14:31:09] 2025-07-27 18:30:15,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:31:09] 2025-07-27 18:30:15,622 | INFO     | collected zombie processes
[2025-07-27 14:31:09] 2025-07-27 18:30:15,622 | INFO     | will attempt to kill all subprocesses of pid=1621801
[2025-07-27 14:31:09] 2025-07-27 18:30:16,924 | INFO     | process IDs to be killed: [1621801] (in reverse order)
[2025-07-27 14:31:09] 2025-07-27 18:30:17,394 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:31:09] 2025-07-27 18:30:17,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:31:09] 2025-07-27 18:30:17,428 | INFO     | did not find any defunct processes belonging to 1621801
[2025-07-27 14:31:09] 2025-07-27 18:30:17,454 | INFO     | did not find any defunct processes belonging to 1621801
[2025-07-27 14:31:09] 2025-07-27 18:30:17,454 | INFO     | ready for new job
[2025-07-27 14:31:09] 2025-07-27 18:30:17,454 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:31:09] 2025-07-27 18:30:17,456 | INFO     | ***************************************
[2025-07-27 14:31:09] 2025-07-27 18:30:17,456 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:31:09] 2025-07-27 18:30:17,456 | INFO     | ***************************************
[2025-07-27 14:31:09] 2025-07-27 18:30:17,456 | INFO     | 
[2025-07-27 14:31:09] 2025-07-27 18:30:17,489 | INFO     | architecture information:
[2025-07-27 14:31:09] 2025-07-27 18:30:17,490 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:31:09] 2025-07-27 18:30:17,625 | INFO     | cat /etc/os-release:
[2025-07-27 14:31:09] NAME="CentOS Linux"
[2025-07-27 14:31:09] VERSION="7 (Core)"
[2025-07-27 14:31:09] ID="centos"
[2025-07-27 14:31:09] ID_LIKE="rhel fedora"
[2025-07-27 14:31:09] VERSION_ID="7"
[2025-07-27 14:31:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:31:09] ANSI_COLOR="0;31"
[2025-07-27 14:31:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:31:09] HOME_URL="https://www.centos.org/"
[2025-07-27 14:31:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:31:09] 
[2025-07-27 14:31:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:31:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:31:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:31:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:31:09] 
[2025-07-27 14:31:09] 2025-07-27 18:30:17,626 | INFO     | ***************************************
[2025-07-27 14:31:09] 2025-07-27 18:30:18,129 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 14:31:09] 2025-07-27 18:30:18,322 | INFO     | sufficient remaining disk space (171808129024 B)
[2025-07-27 14:31:09] 2025-07-27 18:30:18,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:31:09] 2025-07-27 18:30:18,322 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:31:09] 2025-07-27 18:30:18,322 | INFO     | update_server=False
[2025-07-27 14:31:09] 2025-07-27 18:30:18,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:31:09] 2025-07-27 18:30:18,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:31:09] 2025-07-27 18:30:18,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:31:09] 2025-07-27 18:30:18,526 | INFO     | all data control threads have been joined
[2025-07-27 14:31:09] 2025-07-27 18:30:18,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:31:09] 2025-07-27 18:30:18,593 | INFO     | aborting loop
[2025-07-27 14:31:09] 2025-07-27 18:30:19,201 | INFO     | all payload control threads have been joined
[2025-07-27 14:31:09] 2025-07-27 18:30:19,328 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:19,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:31:09] 2025-07-27 18:30:19,532 | INFO     | [data] control thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:19,577 | INFO     | all job control threads have been joined
[2025-07-27 14:31:09] 2025-07-27 18:30:19,599 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:19,775 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:19,799 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,038 | INFO     | [job] validate thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,081 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,207 | INFO     | [payload] control thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,330 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,439 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,448 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,583 | INFO     | [job] control thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,743 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:20,782 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:22,332 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:31:09] 2025-07-27 18:30:23,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634220693312)>', '<ExcThread(monitor, started 139633740474112)>']
[2025-07-27 14:31:09] 2025-07-27 18:30:28,828 | INFO     | all workflow threads have been joined
[2025-07-27 14:31:09] 2025-07-27 18:30:28,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:31:09] 2025-07-27 18:30:28,829 | INFO     | traces error code: 0
[2025-07-27 14:31:09] 2025-07-27 18:30:28,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:31:09] 2025-07-27 18:30:47,836 | INFO     | PID=1598682 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:31:09] 2025-07-27 18:30:47,838 | INFO     | .. there are 22 such processes running
[2025-07-27 14:31:09] 2025-07-27 18:30:47,839 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:31:09] 2025-07-27 18:30:47,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:31:09] 2025-07-27 18:30:47,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:31:09] 2025-07-27 18:30:47,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:31:09] 2025-07-27 18:30:47,839 | INFO     | [monitor] control thread has ended
[2025-07-27 14:31:09] 2025-07-27 18:30:48,874 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:31:09] 2025-07-27 18:30:48,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:31:09] 2025-07-27 18:30:48,925 [wrapper] pilotpid: 1598682
[2025-07-27 14:31:09] 2025-07-27 18:30:48,954 [wrapper] Pilot exit status: 0
[2025-07-27 14:31:09] 2025-07-27 18:30:49,076 [wrapper] pandaids: 6741874052
[2025-07-27 14:31:09] 2025-07-27 18:30:49,679 [wrapper] cleanup supervisor_pilot 2493497 1598683
[2025-07-27 14:31:09] 2025-07-27 18:30:49,688 [wrapper] Test setup, not cleaning
[2025-07-27 14:31:09] 2025-07-27 18:30:49,690 [wrapper] apfmon messages muted
[2025-07-27 14:31:09] 2025-07-27 18:30:49,692 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:31:09] 2025-07-27 18:30:49,698 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:31:09]  *** Error codes and diagnostics ***
[2025-07-27 14:31:09]     "exeErrorCode": 0,
[2025-07-27 14:31:09]     "exeErrorDiag": "",
[2025-07-27 14:31:09]     "pilotErrorCode": 0,
[2025-07-27 14:31:09]     "pilotErrorDiag": "",
[2025-07-27 14:31:09]  *** Listing of results directory ***
[2025-07-27 14:31:09] total 603928
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas    530466 Jul 23 02:14 pilot3.tar.gz
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas      5112 Jul 23 02:20 queuedata.json
[2025-07-27 14:31:09] -rwx------. 1 boincer umatlas     36292 Jul 23 02:23 runpilot2-wrapper.sh
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:31:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:48 run_atlas
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:48 job.xml
[2025-07-27 14:31:09] -rw-r--r--. 2 boincer umatlas 334260992 Jul 27 12:48 EVNT.45697470._000153.pool.root.1
[2025-07-27 14:31:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:48 start_atlas.sh
[2025-07-27 14:31:09] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:48 shared
[2025-07-27 14:31:09] -rw-r--r--. 2 boincer umatlas    542904 Jul 27 12:48 input.tar.gz
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:48 boinc_lockfile
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas      2612 Jul 27 12:48 pandaJob.out
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas    980125 Jul 27 12:48 agis_schedconf.cvmfs.json
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:48 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:31:09] drwx------. 4 boincer umatlas      4096 Jul 27 12:49 pilot3
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas      7160 Jul 27 14:28 init_data.xml
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas 278562249 Jul 27 14:28 HITS.45697472._003229.pool.root.1
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas       529 Jul 27 14:28 boinc_task_state.xml
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas      1033 Jul 27 14:29 memory_monitor_summary.json
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas    305164 Jul 27 14:29 log.45697472._003229.job.log.tgz.1
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas      7764 Jul 27 14:30 heartbeat.json
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas        95 Jul 27 14:30 pilot_heartbeat.json
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas       823 Jul 27 14:30 pilotlog.txt
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas    554793 Jul 27 14:30 log.45697472._003229.job.log.1
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas       357 Jul 27 14:30 output.list
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:30 runtime_log
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas    880640 Jul 27 14:30 result.tar.gz
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas      8650 Jul 27 14:30 runtime_log.err
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas       651 Jul 27 14:30 66nNDmI4hy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmD2KLDmGsVcun.diag
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:31 wrapper_checkpoint.txt
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:31 boinc_mmap_file
[2025-07-27 14:31:09] -rw-r--r--. 1 boincer umatlas     22380 Jul 27 14:31 stderr.txt
[2025-07-27 14:31:09] HITS file was successfully produced:
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas 278562249 Jul 27 14:28 shared/HITS.pool.root.1
[2025-07-27 14:31:09]  *** Contents of shared directory: ***
[2025-07-27 14:31:09] total 599880
[2025-07-27 14:31:09] -rw-r--r--. 2 boincer umatlas 334260992 Jul 27 12:48 ATLAS.root_0
[2025-07-27 14:31:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:48 start_atlas.sh
[2025-07-27 14:31:09] -rw-r--r--. 2 boincer umatlas    542904 Jul 27 12:48 input.tar.gz
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas 278562249 Jul 27 14:28 HITS.pool.root.1
[2025-07-27 14:31:09] -rw-------. 1 boincer umatlas    880640 Jul 27 14:30 result.tar.gz
14:31:11 (1584105): run_atlas exited; CPU time 36674.359406
14:31:11 (1584105): called boinc_finish(0)

</stderr_txt>
]]>

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