Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:34:51 (1705710): wrapper (7.7.26015): starting
12:34:51 (1705710): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 12:34:51] Arguments: --nthreads 8
[2025-07-27 12:34:51] Threads: 8
[2025-07-27 12:34:51] Checking for CVMFS
[2025-07-27 12:34:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:34:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:34:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:34:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:34:51] 2.13.1.0 672044 14404 151584 148818 0 196 24508936 40960001 10408 16776704 0 43786855 99.882 26261379 43596 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 12:34:51] CVMFS is ok
[2025-07-27 12:34:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:34:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:34:51] Further information can be found at the LHC@home message board.
[2025-07-27 12:34:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:34:51] Checking for apptainer binary...
[2025-07-27 12:34:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:34:51] Running /usr/bin/apptainer --version
[2025-07-27 12:34:51] apptainer version 1.4.1-1.el9
[2025-07-27 12:34:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:34:51] c-212-3.aglt2.org
[2025-07-27 12:34:51] apptainer works
[2025-07-27 12:34:51] Set ATHENA_PROC_NUMBER=8
[2025-07-27 12:34:51] Set ATHENA_CORE_NUMBER=8
[2025-07-27 12:34:51] Starting ATLAS job with PandaID=6747376446
[2025-07-27 12:34:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:03:41]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:03:41]  storage_token=
[2025-07-27 14:03:41]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-6747376446/log.45743349._047656.job.log.tgz.1
[2025-07-27 14:03:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/2c/log.45743349._047656.job.log.tgz.1
[2025-07-27 14:03:41]  workdir=None
[2025-07-27 14:03:41] ]
[2025-07-27 14:03:41] 2025-07-27 18:02:56,011 | INFO     | monitor loop #385: job 0:6747376446 is in state 'stageout'
[2025-07-27 14:03:41] 2025-07-27 18:02:56,011 | WARNING  | aborting job monitor tasks since payload process 1718194 is not running
[2025-07-27 14:03:41] 2025-07-27 18:02:56,029 | INFO     | transferring file log.45743349._047656.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-6747376446/log.45743349._047656.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:03:41] 2025-07-27 18:02:56,030 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-6747376446/log.45743349._047656.job.log.tgz.1 /tmp/boinchome/slots/9/log.45743349._047656.job
[2025-07-27 14:03:41] 2025-07-27 18:02:56,060 | INFO     | adding to output.list: log.45743349._047656.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/46/2c/log.45743349._047656.job.log.tg
[2025-07-27 14:03:41] 2025-07-27 18:02:56,062 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:03:41] 2025-07-27 18:02:56,062 | INFO     | summary of transferred files:
[2025-07-27 14:03:41] 2025-07-27 18:02:56,062 | INFO     |  -- lfn=log.45743349._047656.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:03:41] 2025-07-27 18:02:56,063 | INFO     | stage-out finished correctly
[2025-07-27 14:03:41] 2025-07-27 18:02:58,520 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:03:41] 2025-07-27 18:02:58,531 | INFO     | monitor loop #386: job 0:6747376446 is in state 'finished'
[2025-07-27 14:03:41] 2025-07-27 18:02:58,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:03:41] 2025-07-27 18:03:01,040 | INFO     | monitor loop #387: job 0:6747376446 is in state 'finished'
[2025-07-27 14:03:41] 2025-07-27 18:03:01,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:03:41] 2025-07-27 18:03:01,526 | INFO     | job 6747376446 has state=finished
[2025-07-27 14:03:41] 2025-07-27 18:03:01,526 | INFO     | preparing for final server update for job 6747376446 in state='finished'
[2025-07-27 14:03:41] 2025-07-27 18:03:01,527 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:03:41] 2025-07-27 18:03:01,527 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:03:41] 2025-07-27 18:03:01,529 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:03:41] 2025-07-27 18:03:01,529 | INFO     | job 6747376446 has finished - writing final server update
[2025-07-27 14:03:41] 2025-07-27 18:03:01,529 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:03:41] 2025-07-27 18:03:01,530 | INFO     | executing command: lscpu
[2025-07-27 14:03:41] 2025-07-27 18:03:01,607 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:03:41] 2025-07-27 18:03:03,550 | INFO     | monitor loop #388: job 0:6747376446 is in state 'finished'
[2025-07-27 14:03:41] 2025-07-27 18:03:03,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:03:41] 2025-07-27 18:03:06,055 | INFO     | monitor loop #389: job 0:6747376446 is in state 'finished'
[2025-07-27 14:03:41] 2025-07-27 18:03:06,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:03:41] 2025-07-27 18:03:06,730 | INFO     | PID=1709559 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 14:03:41] 2025-07-27 18:03:06,730 | INFO     | .. there are 14 such processes running
[2025-07-27 14:03:41] 2025-07-27 18:03:08,155 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 14:03:41] 2025-07-27 18:03:08,161 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3286.425822916666
[2025-07-27 14:03:41] 2025-07-27 18:03:08,175 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6747376446/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:03:41] 2025-07-27 18:03:08,176 | INFO     | extracted standard info from prmon json
[2025-07-27 14:03:41] 2025-07-27 18:03:08,176 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:03:41] 2025-07-27 18:03:08,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:03:41] 2025-07-27 18:03:08,177 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:03:41] 2025-07-27 18:03:08,177 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:03:41] 2025-07-27 18:03:08,179 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:03:41] 2025-07-27 18:03:08,179 | INFO     | sum of square deviations: 152858680.0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,179 | INFO     | sum of deviations: -1410882481.0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,179 | INFO     | mean x: 1753636820.0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,179 | INFO     | mean y: 2536820.670886076
[2025-07-27 14:03:41] 2025-07-27 18:03:08,179 | INFO     | -- intersect: 16188568699.099709
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | intersect: 16188568699.099709
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | chi2: 0.0023965595698716346
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | -- intersect: 16188568699.099709
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | current memory leak: -9.23 B/s (using 79 data points, chi2=0.00)
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | could have reported an average CPU frequency of 3283 MHz (6 samples)
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | ..............................
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | . Timing measurements:
[2025-07-27 14:03:41] 2025-07-27 18:03:08,180 | INFO     | . get job = 0 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | . initial setup = 2 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | . payload setup = 8 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | . stage-in = 0 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | . payload execution = 5240 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | . stage-out = 0 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | . log creation = 0 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,181 | INFO     | ..............................
[2025-07-27 14:03:41] 2025-07-27 18:03:08,545 | INFO     | 
[2025-07-27 14:03:41] 2025-07-27 18:03:08,545 | INFO     | job summary report
[2025-07-27 14:03:41] 2025-07-27 18:03:08,545 | INFO     | --------------------------------------------------
[2025-07-27 14:03:41] 2025-07-27 18:03:08,545 | INFO     | PanDA job id: 6747376446
[2025-07-27 14:03:41] 2025-07-27 18:03:08,545 | INFO     | task id: 45743349
[2025-07-27 14:03:41] 2025-07-27 18:03:08,545 | INFO     | errors: (none)
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | pilot state: finished 
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | transexitcode: 0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | exeerrorcode: 0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | exeerrordiag: 
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | exitcode: 0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | exitmsg: OK
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | cpuconsumptiontime: 35649 s
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | nevents: 400
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | neventsw: 0
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | pid: 1718194
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | pgrp: 1718194
[2025-07-27 14:03:41] 2025-07-27 18:03:08,546 | INFO     | corecount: 8
[2025-07-27 14:03:41] 2025-07-27 18:03:08,547 | INFO     | event service: False
[2025-07-27 14:03:41] 2025-07-27 18:03:08,547 | INFO     | sizes: {0: 2397424, 6: 2397686, 11: 2397714, 5252: 2423995, 5253: 2423994, 5254: 2433048, 5257: 2433232, 5266: 2433426}
[2025-07-27 14:03:41] 2025-07-27 18:03:08,547 | INFO     | --------------------------------------------------
[2025-07-27 14:03:41] 2025-07-27 18:03:08,547 | INFO     | 
[2025-07-27 14:03:41] 2025-07-27 18:03:08,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-07-27 14:03:41] 2025-07-27 18:03:08,572 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | job 6747376446 has completed (purged errors)
[2025-07-27 14:03:41] 2025-07-27 18:03:08,574 | INFO     | overall cleanup function is called
[2025-07-27 14:03:41] 2025-07-27 18:03:09,579 | INFO     | --- collectZombieJob: --- 10, [1718194]
[2025-07-27 14:03:41] 2025-07-27 18:03:09,580 | INFO     | zombie collector waiting for pid 1718194
[2025-07-27 14:03:41] 2025-07-27 18:03:09,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:03:41] 2025-07-27 18:03:09,580 | INFO     | collected zombie processes
[2025-07-27 14:03:41] 2025-07-27 18:03:09,581 | INFO     | will attempt to kill all subprocesses of pid=1718194
[2025-07-27 14:03:41] 2025-07-27 18:03:09,963 | INFO     | process IDs to be killed: [1718194] (in reverse order)
[2025-07-27 14:03:41] 2025-07-27 18:03:10,090 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:03:41] 2025-07-27 18:03:10,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:03:41] 2025-07-27 18:03:10,107 | INFO     | did not find any defunct processes belonging to 1718194
[2025-07-27 14:03:41] 2025-07-27 18:03:10,120 | INFO     | did not find any defunct processes belonging to 1718194
[2025-07-27 14:03:41] 2025-07-27 18:03:10,120 | INFO     | ready for new job
[2025-07-27 14:03:41] 2025-07-27 18:03:10,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:03:41] 2025-07-27 18:03:10,122 | INFO     | ***************************************
[2025-07-27 14:03:41] 2025-07-27 18:03:10,122 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:03:41] 2025-07-27 18:03:10,122 | INFO     | ***************************************
[2025-07-27 14:03:41] 2025-07-27 18:03:10,122 | INFO     | 
[2025-07-27 14:03:41] 2025-07-27 18:03:10,127 | INFO     | architecture information:
[2025-07-27 14:03:41] 2025-07-27 18:03:10,128 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:03:41] 2025-07-27 18:03:10,152 | INFO     | cat /etc/os-release:
[2025-07-27 14:03:41] NAME="CentOS Linux"
[2025-07-27 14:03:41] VERSION="7 (Core)"
[2025-07-27 14:03:41] ID="centos"
[2025-07-27 14:03:41] ID_LIKE="rhel fedora"
[2025-07-27 14:03:41] VERSION_ID="7"
[2025-07-27 14:03:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:03:41] ANSI_COLOR="0;31"
[2025-07-27 14:03:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:03:41] HOME_URL="https://www.centos.org/"
[2025-07-27 14:03:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:03:41] 
[2025-07-27 14:03:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:03:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:03:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:03:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:03:41] 
[2025-07-27 14:03:41] 2025-07-27 18:03:10,152 | INFO     | ***************************************
[2025-07-27 14:03:41] 2025-07-27 18:03:10,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-07-27 14:03:41] 2025-07-27 18:03:10,682 | INFO     | sufficient remaining disk space (124083240960 B)
[2025-07-27 14:03:41] 2025-07-27 18:03:10,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:03:41] 2025-07-27 18:03:10,682 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:03:41] 2025-07-27 18:03:10,683 | INFO     | update_server=False
[2025-07-27 14:03:41] 2025-07-27 18:03:10,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:03:41] 2025-07-27 18:03:11,062 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 14:03:41] 2025-07-27 18:03:11,063 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 14:03:41] 2025-07-27 18:03:11,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:03:41] 2025-07-27 18:03:11,063 | INFO     | will abort loop
[2025-07-27 14:03:41] 2025-07-27 18:03:11,340 | INFO     | all payload control threads have been joined
[2025-07-27 14:03:41] 2025-07-27 18:03:11,431 | INFO     | all data control threads have been joined
[2025-07-27 14:03:41] 2025-07-27 18:03:11,688 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:11,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:03:41] 2025-07-27 18:03:11,720 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:11,907 | INFO     | all job control threads have been joined
[2025-07-27 14:03:41] 2025-07-27 18:03:12,069 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,346 | INFO     | [payload] control thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,436 | INFO     | [data] control thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,548 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,595 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,759 | INFO     | [job] validate thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,761 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,900 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:12,912 | INFO     | [job] control thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:13,076 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:13,267 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:03:41] 2025-07-27 18:03:13,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:03:41] 2025-07-27 18:03:13,716 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:14,273 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:17,636 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:21,248 | INFO     | job.realtimelogging is not enabled
[2025-07-27 14:03:41] 2025-07-27 18:03:22,253 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:03:41] 2025-07-27 18:03:23,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752773113664)>', '<ExcThread(monitor, started 139751919183616)>']
[2025-07-27 14:03:41] 2025-07-27 18:03:28,740 | INFO     | all workflow threads have been joined
[2025-07-27 14:03:41] 2025-07-27 18:03:28,740 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:03:41] 2025-07-27 18:03:28,740 | INFO     | traces error code: 0
[2025-07-27 14:03:41] 2025-07-27 18:03:28,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:03:41] 2025-07-27 18:03:41,235 | INFO     | PID=1709559 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:03:41] 2025-07-27 18:03:41,237 | INFO     | .. there are 14 such processes running
[2025-07-27 14:03:41] 2025-07-27 18:03:41,237 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:03:41] 2025-07-27 18:03:41,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:03:41] 2025-07-27 18:03:41,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:03:41] 2025-07-27 18:03:41,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:03:41] 2025-07-27 18:03:41,238 | INFO     | [monitor] control thread has ended
[2025-07-27 14:03:41] 2025-07-27 18:03:41,346 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:03:41] 2025-07-27 18:03:41,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:03:41] 2025-07-27 18:03:41,356 [wrapper] pilotpid: 1709559
[2025-07-27 14:03:41] 2025-07-27 18:03:41,363 [wrapper] Pilot exit status: 0
[2025-07-27 14:03:41] 2025-07-27 18:03:41,383 [wrapper] pandaids: 6747376446
[2025-07-27 14:03:41] 2025-07-27 18:03:41,487 [wrapper] cleanup supervisor_pilot 1992280 1709560
[2025-07-27 14:03:41] 2025-07-27 18:03:41,491 [wrapper] Test setup, not cleaning
[2025-07-27 14:03:41] 2025-07-27 18:03:41,496 [wrapper] apfmon messages muted
[2025-07-27 14:03:41] 2025-07-27 18:03:41,500 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:03:41] 2025-07-27 18:03:41,506 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:03:41]  *** Error codes and diagnostics ***
[2025-07-27 14:03:41]     "exeErrorCode": 0,
[2025-07-27 14:03:41]     "exeErrorDiag": "",
[2025-07-27 14:03:41]     "pilotErrorCode": 0,
[2025-07-27 14:03:41]     "pilotErrorDiag": "",
[2025-07-27 14:03:41]  *** Listing of results directory ***
[2025-07-27 14:03:41] total 435872
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 07:10 pilot3.tar.gz
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 07:36 queuedata.json
[2025-07-27 14:03:41] -rwx------. 1 boincer umatlas     36292 Jul 27 07:36 runpilot2-wrapper.sh
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:03:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:34 run_atlas
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:34 job.xml
[2025-07-27 14:03:41] -rw-r--r--. 2 boincer umatlas 228552046 Jul 27 12:34 EVNT.45743347._002645.pool.root.1
[2025-07-27 14:03:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:34 start_atlas.sh
[2025-07-27 14:03:41] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:34 shared
[2025-07-27 14:03:41] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 12:34 input.tar.gz
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:34 boinc_lockfile
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 12:34 pandaJob.out
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas    980125 Jul 27 12:35 agis_schedconf.cvmfs.json
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:35 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:03:41] drwx------. 4 boincer umatlas      4096 Jul 27 12:35 pilot3
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas      6945 Jul 27 13:57 init_data.xml
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas 212264713 Jul 27 14:02 HITS.45743349._047656.pool.root.1
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas       530 Jul 27 14:02 boinc_task_state.xml
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas      1027 Jul 27 14:02 memory_monitor_summary.json
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas    305933 Jul 27 14:02 log.45743349._047656.job.log.tgz.1
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas        95 Jul 27 14:02 pilot_heartbeat.json
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas      7766 Jul 27 14:03 heartbeat.json
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:03 boinc_mmap_file
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:03 wrapper_checkpoint.txt
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas       823 Jul 27 14:03 pilotlog.txt
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas    510738 Jul 27 14:03 log.45743349._047656.job.log.1
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas       357 Jul 27 14:03 output.list
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:03 runtime_log
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas    839680 Jul 27 14:03 result.tar.gz
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas      8655 Jul 27 14:03 runtime_log.err
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas       651 Jul 27 14:03 fYZKDmRrE07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmw7ULDm8cyGKm.diag
[2025-07-27 14:03:41] -rw-r--r--. 1 boincer umatlas     22293 Jul 27 14:03 stderr.txt
[2025-07-27 14:03:41] HITS file was successfully produced:
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas 212264713 Jul 27 14:02 shared/HITS.pool.root.1
[2025-07-27 14:03:41]  *** Contents of shared directory: ***
[2025-07-27 14:03:41] total 431864
[2025-07-27 14:03:41] -rw-r--r--. 2 boincer umatlas 228552046 Jul 27 12:34 ATLAS.root_0
[2025-07-27 14:03:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:34 start_atlas.sh
[2025-07-27 14:03:41] -rw-r--r--. 2 boincer umatlas    542888 Jul 27 12:34 input.tar.gz
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas 212264713 Jul 27 14:02 HITS.pool.root.1
[2025-07-27 14:03:41] -rw-------. 1 boincer umatlas    839680 Jul 27 14:03 result.tar.gz
14:03:43 (1705710): run_atlas exited; CPU time 35778.394897
14:03:43 (1705710): called boinc_finish(0)

</stderr_txt>
]]>

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