Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:25:30 (2226929): wrapper (7.7.26015): starting
07:25:30 (2226929): wrapper: running run_atlas (--nthreads 3)
[2025-07-28 07:25:30] Arguments: --nthreads 3
[2025-07-28 07:25:30] Threads: 3
[2025-07-28 07:25:30] Checking for CVMFS
[2025-07-28 07:25:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 07:25:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 07:25:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 07:25:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 07:25:30] 2.9.2.0 752881 5222 84604 148837 1 56 35868718 36864001 0 130560 0 3911520 99.990 181672 2168 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-28 07:25:30] CVMFS is ok
[2025-07-28 07:25:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 07:25:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 07:25:30] Further information can be found at the LHC@home message board.
[2025-07-28 07:25:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 07:25:30] Checking for apptainer binary...
[2025-07-28 07:25:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 07:25:30] Running /usr/bin/apptainer --version
[2025-07-28 07:25:30] apptainer version 1.4.1-1.1
[2025-07-28 07:25:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 07:25:30] thA305b
[2025-07-28 07:25:30] apptainer works
[2025-07-28 07:25:30] Set ATHENA_PROC_NUMBER=3
[2025-07-28 07:25:30] Set ATHENA_CORE_NUMBER=3
[2025-07-28 07:25:30] Starting ATLAS job with PandaID=6747412674
[2025-07-28 07:25:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 08:59:56]  *** The last 200 lines of the pilot log: ***
[2025-07-28 08:59:56]  is_tar=False
[2025-07-28 08:59:56]  lfn=log.45743349._049594.job.log.tgz.1
[2025-07-28 08:59:56]  mtime=0
[2025-07-28 08:59:56]  protocol_id=None
[2025-07-28 08:59:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 08:59:56]  replicas=None
[2025-07-28 08:59:56]  scope=mc23_13p6TeV
[2025-07-28 08:59:56]  status=None
[2025-07-28 08:59:56]  status_code=0
[2025-07-28 08:59:56]  storage_token=
[2025-07-28 08:59:56]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6747412674/log.45743349._049594.job.log.tgz.1
[2025-07-28 08:59:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/3d/log.45743349._049594.job.log.tgz.1
[2025-07-28 08:59:56]  workdir=None
[2025-07-28 08:59:56] ]
[2025-07-28 08:59:56] 2025-07-28 06:59:20,485 | INFO     | transferring file log.45743349._049594.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6747412674/log.45743349._049594.job.log.tgz.1 to /local/data/boinc/
[2025-07-28 08:59:56] 2025-07-28 06:59:20,485 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6747412674/log.45743349._049594.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0495
[2025-07-28 08:59:56] 2025-07-28 06:59:20,498 | INFO     | adding to output.list: log.45743349._049594.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/3d/log.45743349._049594.job.log.tg
[2025-07-28 08:59:56] 2025-07-28 06:59:20,498 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 08:59:56] 2025-07-28 06:59:20,498 | INFO     | summary of transferred files:
[2025-07-28 08:59:56] 2025-07-28 06:59:20,498 | INFO     |  -- lfn=log.45743349._049594.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 08:59:56] 2025-07-28 06:59:20,498 | INFO     | stage-out finished correctly
[2025-07-28 08:59:56] 2025-07-28 06:59:21,771 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | job 6747412674 has state=finished
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | preparing for final server update for job 6747412674 in state='finished'
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | this job has now completed (state=finished)
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | log transfer has been attempted: DONE
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | job 6747412674 has finished - writing final server update
[2025-07-28 08:59:56] 2025-07-28 06:59:21,801 | INFO     | total number of processed events: 400 (read)
[2025-07-28 08:59:56] 2025-07-28 06:59:21,802 | INFO     | executing command: lscpu
[2025-07-28 08:59:56] 2025-07-28 06:59:21,814 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 08:59:56] 2025-07-28 06:59:23,941 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 08:59:56] 2025-07-28 06:59:23,942 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3575.6285833333336
[2025-07-28 08:59:56] 2025-07-28 06:59:23,943 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6747412674/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 08:59:56] 2025-07-28 06:59:23,943 | INFO     | extracted standard info from prmon json
[2025-07-28 08:59:56] 2025-07-28 06:59:23,944 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 08:59:56] 2025-07-28 06:59:23,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 08:59:56] 2025-07-28 06:59:23,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 08:59:56] 2025-07-28 06:59:23,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 08:59:56] 2025-07-28 06:59:23,944 | INFO     | fitting pss+swap vs Time
[2025-07-28 08:59:56] 2025-07-28 06:59:23,944 | INFO     | sum of square deviations: 190403570.0
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | sum of deviations: -17447805478.0
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | mean x: 1753683222.0
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | mean y: 2482609.294117647
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | -- intersect: 160702850399.08026
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | intersect: 160702850399.08026
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | chi2: 0.08479100856810731
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | -- intersect: 160702850399.08026
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | current memory leak: -91.64 B/s (using 85 data points, chi2=0.08)
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | could have reported an average CPU frequency of 3933 MHz (7 samples)
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | ..............................
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . Timing measurements:
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . get job = 0 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . initial setup = 1 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . payload setup = 3 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . stage-in = 0 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . payload execution = 5605 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . stage-out = 0 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | . log creation = 0 s
[2025-07-28 08:59:56] 2025-07-28 06:59:23,945 | INFO     | ..............................
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | 
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | job summary report
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | --------------------------------------------------
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | PanDA job id: 6747412674
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | task id: 45743349
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | errors: (none)
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | pilot state: finished 
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | transexitcode: 0
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | exeerrorcode: 0
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | exeerrordiag: 
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | exitcode: 0
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | exitmsg: OK
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | cpuconsumptiontime: 16204 s
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | nevents: 400
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | neventsw: 0
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | pid: 2237055
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | pgrp: 2237055
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | corecount: 3
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | event service: False
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | sizes: {0: 2397307, 1: 2397506, 3: 2397768, 11: 2397796, 5612: 2433606, 5613: 2433606, 5616: 2433928}
[2025-07-28 08:59:56] 2025-07-28 06:59:24,420 | INFO     | --------------------------------------------------
[2025-07-28 08:59:56] 2025-07-28 06:59:24,421 | INFO     | 
[2025-07-28 08:59:56] 2025-07-28 06:59:24,421 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-28 08:59:56] 2025-07-28 06:59:24,432 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,432 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,432 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,432 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | job 6747412674 has completed (purged errors)
[2025-07-28 08:59:56] 2025-07-28 06:59:24,433 | INFO     | overall cleanup function is called
[2025-07-28 08:59:56] 2025-07-28 06:59:25,440 | INFO     | --- collectZombieJob: --- 10, [2237055]
[2025-07-28 08:59:56] 2025-07-28 06:59:25,440 | INFO     | zombie collector waiting for pid 2237055
[2025-07-28 08:59:56] 2025-07-28 06:59:25,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 08:59:56] 2025-07-28 06:59:25,440 | INFO     | collected zombie processes
[2025-07-28 08:59:56] 2025-07-28 06:59:25,440 | INFO     | will attempt to kill all subprocesses of pid=2237055
[2025-07-28 08:59:56] 2025-07-28 06:59:25,484 | INFO     | process IDs to be killed: [2237055] (in reverse order)
[2025-07-28 08:59:56] 2025-07-28 06:59:25,508 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 08:59:56] 2025-07-28 06:59:25,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 08:59:56] 2025-07-28 06:59:25,510 | INFO     | did not find any defunct processes belonging to 2237055
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | did not find any defunct processes belonging to 2237055
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | ready for new job
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | ***************************************
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | ***************************************
[2025-07-28 08:59:56] 2025-07-28 06:59:25,511 | INFO     | 
[2025-07-28 08:59:56] 2025-07-28 06:59:25,512 | INFO     | architecture information:
[2025-07-28 08:59:56] 2025-07-28 06:59:25,512 | INFO     | executing command: cat /etc/os-release
[2025-07-28 08:59:56] 2025-07-28 06:59:25,520 | INFO     | cat /etc/os-release:
[2025-07-28 08:59:56] NAME="CentOS Linux"
[2025-07-28 08:59:56] VERSION="7 (Core)"
[2025-07-28 08:59:56] ID="centos"
[2025-07-28 08:59:56] ID_LIKE="rhel fedora"
[2025-07-28 08:59:56] VERSION_ID="7"
[2025-07-28 08:59:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 08:59:56] ANSI_COLOR="0;31"
[2025-07-28 08:59:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 08:59:56] HOME_URL="https://www.centos.org/"
[2025-07-28 08:59:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 08:59:56] 
[2025-07-28 08:59:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 08:59:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 08:59:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 08:59:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 08:59:56] 
[2025-07-28 08:59:56] 2025-07-28 06:59:25,521 | INFO     | ***************************************
[2025-07-28 08:59:56] 2025-07-28 06:59:26,024 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-28 08:59:56] 2025-07-28 06:59:26,036 | INFO     | sufficient remaining disk space (164227973120 B)
[2025-07-28 08:59:56] 2025-07-28 06:59:26,036 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 08:59:56] 2025-07-28 06:59:26,036 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 08:59:56] 2025-07-28 06:59:26,036 | INFO     | update_server=False
[2025-07-28 08:59:56] 2025-07-28 06:59:26,037 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 08:59:56] 2025-07-28 06:59:26,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 08:59:56] 2025-07-28 06:59:26,223 | INFO     | all payload control threads have been joined
[2025-07-28 08:59:56] 2025-07-28 06:59:26,250 | INFO     | all data control threads have been joined
[2025-07-28 08:59:56] 2025-07-28 06:59:26,379 | WARNING  | process 2237055 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 08:59:56] 2025-07-28 06:59:26,410 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 08:59:56] 2025-07-28 06:59:26,449 | INFO     | number of running child processes to parent process 2237055: 1
[2025-07-28 08:59:56] 2025-07-28 06:59:26,449 | INFO     | maximum number of monitored processes: 6
[2025-07-28 08:59:56] 2025-07-28 06:59:26,449 | INFO     | aborting job monitoring since job object (job id=6747412674) has expired
[2025-07-28 08:59:56] 2025-07-28 06:59:26,449 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:59:56] 2025-07-28 06:59:26,449 | INFO     | will abort loop
[2025-07-28 08:59:56] 2025-07-28 06:59:27,042 | INFO     | [job] retrieve thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,086 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,189 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,229 | INFO     | [payload] control thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,255 | INFO     | [data] control thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,359 | INFO     | all job control threads have been joined
[2025-07-28 08:59:56] 2025-07-28 06:59:27,455 | INFO     | [job] job monitor thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,621 | INFO     | [payload] validate_post thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,790 | INFO     | [payload] failed_post thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:27,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 08:59:56] 2025-07-28 06:59:27,880 | INFO     | [data] copytool_in thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:28,043 | INFO     | [data] copytool_out thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:28,365 | INFO     | [job] control thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:28,438 | INFO     | [job] validate thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:28,538 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:28,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:59:56] 2025-07-28 06:59:29,991 | INFO     | [job] queue monitor thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:31,815 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:36,850 | INFO     | job.realtimelogging is not enabled
[2025-07-28 08:59:56] 2025-07-28 06:59:37,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 08:59:56] 2025-07-28 06:59:39,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140118625630016)>', '<ExcThread(monitor, started 140118006429440)>']
[2025-07-28 08:59:56] 2025-07-28 06:59:44,508 | INFO     | all workflow threads have been joined
[2025-07-28 08:59:56] 2025-07-28 06:59:44,508 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 08:59:56] 2025-07-28 06:59:44,508 | INFO     | traces error code: 0
[2025-07-28 08:59:56] 2025-07-28 06:59:44,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | INFO     | PID=2230568 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 08:59:56] 2025-07-28 06:59:55,946 | INFO     | [monitor] control thread has ended
[2025-07-28 08:59:56] 2025-07-28 06:59:55,990 [wrapper] ==== pilot stdout END ====
[2025-07-28 08:59:56] 2025-07-28 06:59:55,993 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 08:59:56] 2025-07-28 06:59:55,995 [wrapper] pilotpid: 2230568
[2025-07-28 08:59:56] 2025-07-28 06:59:55,998 [wrapper] Pilot exit status: 0
[2025-07-28 08:59:56] 2025-07-28 06:59:56,005 [wrapper] pandaids: 6747412674
[2025-07-28 08:59:56] 2025-07-28 06:59:56,020 [wrapper] cleanup supervisor_pilot 2249670 2230569
[2025-07-28 08:59:56] 2025-07-28 06:59:56,023 [wrapper] Test setup, not cleaning
[2025-07-28 08:59:56] 2025-07-28 06:59:56,025 [wrapper] apfmon messages muted
[2025-07-28 08:59:56] 2025-07-28 06:59:56,027 [wrapper] ==== wrapper stdout END ====
[2025-07-28 08:59:56] 2025-07-28 06:59:56,029 [wrapper] ==== wrapper stderr END ====
[2025-07-28 08:59:56]  *** Error codes and diagnostics ***
[2025-07-28 08:59:56]     "exeErrorCode": 0,
[2025-07-28 08:59:56]     "exeErrorDiag": "",
[2025-07-28 08:59:56]     "pilotErrorCode": 0,
[2025-07-28 08:59:56]     "pilotErrorDiag": "",
[2025-07-28 08:59:56]  *** Listing of results directory ***
[2025-07-28 08:59:56] total 437076
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc    530466 Jul 27 15:42 pilot3.tar.gz
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc      5112 Jul 27 16:04 queuedata.json
[2025-07-28 08:59:56] -rwx------ 1 boinc boinc     36292 Jul 27 16:05 runpilot2-wrapper.sh
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc       100 Jul 28 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 08:59:56] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 07:25 run_atlas
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc       105 Jul 28 07:25 job.xml
[2025-07-28 08:59:56] -rw-r--r-- 2 boinc boinc 230631499 Jul 28 07:25 EVNT.45743347._002734.pool.root.1
[2025-07-28 08:59:56] -rw-r--r-- 2 boinc boinc    542896 Jul 28 07:25 input.tar.gz
[2025-07-28 08:59:56] -rw-r--r-- 2 boinc boinc     15095 Jul 28 07:25 start_atlas.sh
[2025-07-28 08:59:56] drwxrwx--x 2 boinc boinc      4096 Jul 28 07:25 shared
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc         0 Jul 28 07:25 boinc_setup_complete
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc      6449 Jul 28 07:25 init_data.xml
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc         0 Jul 28 07:25 boinc_lockfile
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc      2563 Jul 28 07:25 pandaJob.out
[2025-07-28 08:59:56] -rw------- 1 boinc boinc    980125 Jul 28 07:25 agis_schedconf.cvmfs.json
[2025-07-28 08:59:56] -rw------- 1 boinc boinc   1593052 Jul 28 07:25 agis_ddmendpoints.agis.ALL.json
[2025-07-28 08:59:56] drwx------ 4 boinc boinc      4096 Jul 28 07:25 pilot3
[2025-07-28 08:59:56] -rw------- 1 boinc boinc 211474868 Jul 28 08:59 HITS.45743349._049594.pool.root.1
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc       529 Jul 28 08:59 boinc_task_state.xml
[2025-07-28 08:59:56] -rw------- 1 boinc boinc        95 Jul 28 08:59 pilot_heartbeat.json
[2025-07-28 08:59:56] -rw------- 1 boinc boinc      1018 Jul 28 08:59 memory_monitor_summary.json
[2025-07-28 08:59:56] -rw------- 1 boinc boinc    247592 Jul 28 08:59 log.45743349._049594.job.log.tgz.1
[2025-07-28 08:59:56] -rw------- 1 boinc boinc      7756 Jul 28 08:59 heartbeat.json
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc      8192 Jul 28 08:59 boinc_mmap_file
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc        27 Jul 28 08:59 wrapper_checkpoint.txt
[2025-07-28 08:59:56] -rw------- 1 boinc boinc       817 Jul 28 08:59 pilotlog.txt
[2025-07-28 08:59:56] -rw------- 1 boinc boinc    543327 Jul 28 08:59 log.45743349._049594.job.log.1
[2025-07-28 08:59:56] -rw------- 1 boinc boinc       357 Jul 28 08:59 output.list
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc       620 Jul 28 08:59 runtime_log
[2025-07-28 08:59:56] -rw------- 1 boinc boinc    808960 Jul 28 08:59 result.tar.gz
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc      8739 Jul 28 08:59 runtime_log.err
[2025-07-28 08:59:56] -rw------- 1 boinc boinc       660 Jul 28 08:59 oZoLDmhBH07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8SVLDmUkZAJn.diag
[2025-07-28 08:59:56] -rw-r--r-- 1 boinc boinc     21525 Jul 28 08:59 stderr.txt
[2025-07-28 08:59:56] HITS file was successfully produced:
[2025-07-28 08:59:56] -rw------- 1 boinc boinc 211474868 Jul 28 08:59 shared/HITS.pool.root.1
[2025-07-28 08:59:56]  *** Contents of shared directory: ***
[2025-07-28 08:59:56] total 433096
[2025-07-28 08:59:56] -rw-r--r-- 2 boinc boinc 230631499 Jul 28 07:25 ATLAS.root_0
[2025-07-28 08:59:56] -rw-r--r-- 2 boinc boinc    542896 Jul 28 07:25 input.tar.gz
[2025-07-28 08:59:56] -rw-r--r-- 2 boinc boinc     15095 Jul 28 07:25 start_atlas.sh
[2025-07-28 08:59:56] -rw------- 1 boinc boinc 211474868 Jul 28 08:59 HITS.pool.root.1
[2025-07-28 08:59:56] -rw------- 1 boinc boinc    808960 Jul 28 08:59 result.tar.gz
08:59:57 (2226929): run_atlas exited; CPU time 16223.094253
08:59:57 (2226929): called boinc_finish(0)

</stderr_txt>
]]>

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