Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:48:33 (582017): wrapper (7.7.26015): starting
13:48:33 (582017): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 13:48:33] Arguments: --nthreads 12
[2025-07-27 13:48:33] Threads: 12
[2025-07-27 13:48:33] Checking for CVMFS
[2025-07-27 13:48:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:48:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:48:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:48:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:48:33] 2.13.0.0 2408171 18686 324068 148819 2 439 23422509 32935936 9573 16776704 0 38067754 99.689 58405366 29767 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:48:33] CVMFS is ok
[2025-07-27 13:48:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:48:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:48:33] Further information can be found at the LHC@home message board.
[2025-07-27 13:48:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:48:33] Checking for apptainer binary...
[2025-07-27 13:48:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:48:33] Running /usr/bin/apptainer --version
[2025-07-27 13:48:33] apptainer version 1.4.1-1.el9
[2025-07-27 13:48:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:48:33] c6-5-7-3.aglt2.org
[2025-07-27 13:48:33] apptainer works
[2025-07-27 13:48:33] Set ATHENA_PROC_NUMBER=12
[2025-07-27 13:48:33] Set ATHENA_CORE_NUMBER=12
[2025-07-27 13:48:34] Starting ATLAS job with PandaID=6746125784
[2025-07-27 13:48:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 15:15:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 15:15:09]  replicas=None
[2025-07-27 15:15:09]  scope=mc23_13p6TeV
[2025-07-27 15:15:09]  status=None
[2025-07-27 15:15:09]  status_code=0
[2025-07-27 15:15:09]  storage_token=
[2025-07-27 15:15:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746125784/log.45759816._000005.job.log.tgz.1
[2025-07-27 15:15:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/71/log.45759816._000005.job.log.tgz.1
[2025-07-27 15:15:09]  workdir=None
[2025-07-27 15:15:09] ]
[2025-07-27 15:15:09] 2025-07-27 19:14:28,118 | INFO     | transferring file log.45759816._000005.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746125784/log.45759816._000005.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 15:15:09] 2025-07-27 19:14:28,119 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746125784/log.45759816._000005.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759816._000005.job
[2025-07-27 15:15:09] 2025-07-27 19:14:28,142 | INFO     | adding to output.list: log.45759816._000005.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/71/log.45759816._000005.job.log.tg
[2025-07-27 15:15:09] 2025-07-27 19:14:28,143 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 15:15:09] 2025-07-27 19:14:28,143 | INFO     | summary of transferred files:
[2025-07-27 15:15:09] 2025-07-27 19:14:28,143 | INFO     |  -- lfn=log.45759816._000005.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 15:15:09] 2025-07-27 19:14:28,143 | INFO     | stage-out finished correctly
[2025-07-27 15:15:09] 2025-07-27 19:14:28,465 | WARNING  | process 593088 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 15:15:09] 2025-07-27 19:14:28,465 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746125784/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:15:09] 2025-07-27 19:14:28,707 | INFO     | number of running child processes to parent process 593088: 1
[2025-07-27 15:15:09] 2025-07-27 19:14:28,707 | INFO     | maximum number of monitored processes: 6
[2025-07-27 15:15:09] 2025-07-27 19:14:30,089 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 15:15:09] 2025-07-27 19:14:31,211 | INFO     | monitor loop #374: job 0:6746125784 is in state 'finished'
[2025-07-27 15:15:09] 2025-07-27 19:14:31,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:15:09] 2025-07-27 19:14:31,587 | INFO     | job 6746125784 has state=finished
[2025-07-27 15:15:09] 2025-07-27 19:14:31,588 | INFO     | preparing for final server update for job 6746125784 in state='finished'
[2025-07-27 15:15:09] 2025-07-27 19:14:31,588 | INFO     | this job has now completed (state=finished)
[2025-07-27 15:15:09] 2025-07-27 19:14:31,588 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 15:15:09] 2025-07-27 19:14:31,588 | INFO     | log transfer has been attempted: DONE
[2025-07-27 15:15:09] 2025-07-27 19:14:31,588 | INFO     | job 6746125784 has finished - writing final server update
[2025-07-27 15:15:09] 2025-07-27 19:14:31,589 | INFO     | total number of processed events: 400 (read)
[2025-07-27 15:15:09] 2025-07-27 19:14:31,589 | INFO     | executing command: lscpu
[2025-07-27 15:15:09] 2025-07-27 19:14:31,652 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 15:15:09] 2025-07-27 19:14:33,714 | INFO     | monitor loop #375: job 0:6746125784 is in state 'finished'
[2025-07-27 15:15:09] 2025-07-27 19:14:33,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:15:09] 2025-07-27 19:14:36,218 | INFO     | monitor loop #376: job 0:6746125784 is in state 'finished'
[2025-07-27 15:15:09] 2025-07-27 19:14:36,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 15:15:09] 2025-07-27 19:14:36,734 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 15:15:09] 2025-07-27 19:14:36,742 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2789.197839285715
[2025-07-27 15:15:09] 2025-07-27 19:14:36,751 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746125784/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 15:15:09] 2025-07-27 19:14:36,752 | INFO     | extracted standard info from prmon json
[2025-07-27 15:15:09] 2025-07-27 19:14:36,752 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 15:15:09] 2025-07-27 19:14:36,752 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 15:15:09] 2025-07-27 19:14:36,752 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 15:15:09] 2025-07-27 19:14:36,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | fitting pss+swap vs Time
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | sum of square deviations: 141547817.94805193
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | sum of deviations: -5554994308.999998
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | mean x: 1753641182.025974
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | mean y: 2463478.0
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | -- intersect: 68823494613.62256
[2025-07-27 15:15:09] 2025-07-27 19:14:36,754 | INFO     | intersect: 68823494613.62256
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | chi2: 0.14900421441628384
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | -- intersect: 68823494613.62256
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | current memory leak: -39.24 B/s (using 77 data points, chi2=0.15)
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | could have reported an average CPU frequency of 2668 MHz (6 samples)
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | ..............................
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | . Timing measurements:
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | . get job = 0 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,755 | INFO     | . initial setup = 3 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,756 | INFO     | . payload setup = 8 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,756 | INFO     | . stage-in = 0 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,756 | INFO     | . payload execution = 5110 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,756 | INFO     | . stage-out = 0 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,756 | INFO     | . log creation = 0 s
[2025-07-27 15:15:09] 2025-07-27 19:14:36,756 | INFO     | ..............................
[2025-07-27 15:15:09] 2025-07-27 19:14:37,058 | INFO     | 
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | job summary report
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | --------------------------------------------------
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | PanDA job id: 6746125784
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | task id: 45759816
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | errors: (none)
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | pilot state: finished 
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | transexitcode: 0
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | exeerrorcode: 0
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | exeerrordiag: 
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | exitcode: 0
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | exitmsg: OK
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | cpuconsumptiontime: 54676 s
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | nevents: 400
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | neventsw: 0
[2025-07-27 15:15:09] 2025-07-27 19:14:37,059 | INFO     | pid: 593088
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | pgrp: 593088
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | corecount: 12
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | event service: False
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | sizes: {0: 2397298, 1: 2397440, 6: 2397702, 11: 2397730, 5122: 2423937, 5123: 2432935, 5125: 2433119, 5132: 2433313}
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | --------------------------------------------------
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | 
[2025-07-27 15:15:09] 2025-07-27 19:14:37,060 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 15:15:09] 2025-07-27 19:14:37,080 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,082 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 15:15:09] 2025-07-27 19:14:37,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 15:15:09] 2025-07-27 19:14:37,082 | INFO     | job 6746125784 has completed (purged errors)
[2025-07-27 15:15:09] 2025-07-27 19:14:37,082 | INFO     | overall cleanup function is called
[2025-07-27 15:15:09] 2025-07-27 19:14:38,090 | INFO     | --- collectZombieJob: --- 10, [593088]
[2025-07-27 15:15:09] 2025-07-27 19:14:38,090 | INFO     | zombie collector waiting for pid 593088
[2025-07-27 15:15:09] 2025-07-27 19:14:38,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 15:15:09] 2025-07-27 19:14:38,090 | INFO     | collected zombie processes
[2025-07-27 15:15:09] 2025-07-27 19:14:38,091 | INFO     | will attempt to kill all subprocesses of pid=593088
[2025-07-27 15:15:09] 2025-07-27 19:14:38,352 | INFO     | process IDs to be killed: [593088] (in reverse order)
[2025-07-27 15:15:09] 2025-07-27 19:14:38,447 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 15:15:09] 2025-07-27 19:14:38,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 15:15:09] 2025-07-27 19:14:38,459 | INFO     | did not find any defunct processes belonging to 593088
[2025-07-27 15:15:09] 2025-07-27 19:14:38,471 | INFO     | did not find any defunct processes belonging to 593088
[2025-07-27 15:15:09] 2025-07-27 19:14:38,472 | INFO     | ready for new job
[2025-07-27 15:15:09] 2025-07-27 19:14:38,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 15:15:09] 2025-07-27 19:14:38,473 | INFO     | ***************************************
[2025-07-27 15:15:09] 2025-07-27 19:14:38,473 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 15:15:09] 2025-07-27 19:14:38,474 | INFO     | ***************************************
[2025-07-27 15:15:09] 2025-07-27 19:14:38,474 | INFO     | 
[2025-07-27 15:15:09] 2025-07-27 19:14:38,477 | INFO     | architecture information:
[2025-07-27 15:15:09] 2025-07-27 19:14:38,477 | INFO     | executing command: cat /etc/os-release
[2025-07-27 15:15:09] 2025-07-27 19:14:38,494 | INFO     | cat /etc/os-release:
[2025-07-27 15:15:09] NAME="CentOS Linux"
[2025-07-27 15:15:09] VERSION="7 (Core)"
[2025-07-27 15:15:09] ID="centos"
[2025-07-27 15:15:09] ID_LIKE="rhel fedora"
[2025-07-27 15:15:09] VERSION_ID="7"
[2025-07-27 15:15:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 15:15:09] ANSI_COLOR="0;31"
[2025-07-27 15:15:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 15:15:09] HOME_URL="https://www.centos.org/"
[2025-07-27 15:15:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 15:15:09] 
[2025-07-27 15:15:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 15:15:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 15:15:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 15:15:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 15:15:09] 
[2025-07-27 15:15:09] 2025-07-27 19:14:38,494 | INFO     | ***************************************
[2025-07-27 15:15:09] 2025-07-27 19:14:38,997 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 15:15:09] 2025-07-27 19:14:39,020 | INFO     | sufficient remaining disk space (76367790080 B)
[2025-07-27 15:15:09] 2025-07-27 19:14:39,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 15:15:09] 2025-07-27 19:14:39,022 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 15:15:09] 2025-07-27 19:14:39,022 | INFO     | update_server=False
[2025-07-27 15:15:09] 2025-07-27 19:14:39,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 15:15:09] 2025-07-27 19:14:39,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 15:15:09] 2025-07-27 19:14:39,439 | INFO     | all payload control threads have been joined
[2025-07-27 15:15:09] 2025-07-27 19:14:39,651 | INFO     | all job control threads have been joined
[2025-07-27 15:15:09] 2025-07-27 19:14:39,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:15:09] 2025-07-27 19:14:39,727 | INFO     | aborting loop
[2025-07-27 15:15:09] 2025-07-27 19:14:39,748 | INFO     | all data control threads have been joined
[2025-07-27 15:15:09] 2025-07-27 19:14:40,027 | INFO     | [job] retrieve thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:40,198 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:40,445 | INFO     | [payload] control thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:40,656 | INFO     | [job] control thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:40,678 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 15:15:09] 2025-07-27 19:14:40,732 | INFO     | [job] job monitor thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:40,753 | INFO     | [data] control thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:40,986 | INFO     | [payload] failed_post thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,008 | INFO     | [data] copytool_in thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,027 | INFO     | [data] copytool_out thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,140 | INFO     | [payload] validate_post thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,155 | INFO     | [job] validate thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,235 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,407 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:41,851 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 15:15:09] 2025-07-27 19:14:42,856 | INFO     | [job] queue monitor thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:44,683 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:49,577 | INFO     | job.realtimelogging is not enabled
[2025-07-27 15:15:09] 2025-07-27 19:14:50,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 15:15:09] 2025-07-27 19:14:52,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310092048192)>', '<ExcThread(monitor, started 140309451233024)>']
[2025-07-27 15:15:09] 2025-07-27 19:14:57,436 | INFO     | all workflow threads have been joined
[2025-07-27 15:15:09] 2025-07-27 19:14:57,436 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 15:15:09] 2025-07-27 19:14:57,437 | INFO     | traces error code: 0
[2025-07-27 15:15:09] 2025-07-27 19:14:57,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 15:15:09] 2025-07-27 19:15:09,494 | INFO     | PID=586425 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 15:15:09] 2025-07-27 19:15:09,495 | INFO     | .. there are 10 such processes running
[2025-07-27 15:15:09] 2025-07-27 19:15:09,495 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 15:15:09] 2025-07-27 19:15:09,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 15:15:09] 2025-07-27 19:15:09,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 15:15:09] 2025-07-27 19:15:09,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 15:15:09] 2025-07-27 19:15:09,495 | INFO     | [monitor] control thread has ended
[2025-07-27 15:15:09] 2025-07-27 19:15:09,659 [wrapper] ==== pilot stdout END ====
[2025-07-27 15:15:09] 2025-07-27 19:15:09,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 15:15:09] 2025-07-27 19:15:09,664 [wrapper] pilotpid: 586425
[2025-07-27 15:15:09] 2025-07-27 19:15:09,668 [wrapper] Pilot exit status: 0
[2025-07-27 15:15:09] 2025-07-27 19:15:09,685 [wrapper] pandaids: 6746125784
[2025-07-27 15:15:09] 2025-07-27 19:15:09,743 [wrapper] cleanup supervisor_pilot  829767 586426
[2025-07-27 15:15:09] 2025-07-27 19:15:09,747 [wrapper] Test setup, not cleaning
[2025-07-27 15:15:09] 2025-07-27 19:15:09,752 [wrapper] apfmon messages muted
[2025-07-27 15:15:09] 2025-07-27 19:15:09,756 [wrapper] ==== wrapper stdout END ====
[2025-07-27 15:15:09] 2025-07-27 19:15:09,759 [wrapper] ==== wrapper stderr END ====
[2025-07-27 15:15:09]  *** Error codes and diagnostics ***
[2025-07-27 15:15:09]     "exeErrorCode": 0,
[2025-07-27 15:15:09]     "exeErrorDiag": "",
[2025-07-27 15:15:09]     "pilotErrorCode": 0,
[2025-07-27 15:15:09]     "pilotErrorDiag": "",
[2025-07-27 15:15:09]  *** Listing of results directory ***
[2025-07-27 15:15:09] total 406916
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 01:26 pilot3.tar.gz
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 01:29 queuedata.json
[2025-07-27 15:15:09] -rwx------. 1 boincer umatlas     36292 Jul 27 01:30 runpilot2-wrapper.sh
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 15:15:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:48 run_atlas
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:48 job.xml
[2025-07-27 15:15:09] -rw-r--r--. 2 boincer umatlas 238403922 Jul 27 13:48 EVNT.45759813._000001.pool.root.1
[2025-07-27 15:15:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:48 start_atlas.sh
[2025-07-27 15:15:09] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:48 shared
[2025-07-27 15:15:09] -rw-r--r--. 2 boincer umatlas    542868 Jul 27 13:48 input.tar.gz
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:48 boinc_lockfile
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas      2558 Jul 27 13:48 pandaJob.out
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas    980117 Jul 27 13:48 agis_schedconf.cvmfs.json
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:48 agis_ddmendpoints.agis.ALL.json
[2025-07-27 15:15:09] drwx------. 4 boincer umatlas      4096 Jul 27 13:48 pilot3
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 15:10 init_data.xml
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas 172676967 Jul 27 15:13 HITS.45759816._000005.pool.root.1
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas       530 Jul 27 15:14 boinc_task_state.xml
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas        95 Jul 27 15:14 pilot_heartbeat.json
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas      1036 Jul 27 15:14 memory_monitor_summary.json
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas    360471 Jul 27 15:14 log.45759816._000005.job.log.tgz.1
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas      7816 Jul 27 15:14 heartbeat.json
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 15:15 boinc_mmap_file
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas        27 Jul 27 15:15 wrapper_checkpoint.txt
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas       822 Jul 27 15:15 pilotlog.txt
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas    498255 Jul 27 15:15 log.45759816._000005.job.log.1
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas       357 Jul 27 15:15 output.list
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas       620 Jul 27 15:15 runtime_log
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas    880640 Jul 27 15:15 result.tar.gz
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 15:15 runtime_log.err
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas       654 Jul 27 15:15 PNCMDmt88z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbMULDmOnBg6m.diag
[2025-07-27 15:15:09] -rw-r--r--. 1 boincer umatlas     21901 Jul 27 15:15 stderr.txt
[2025-07-27 15:15:09] HITS file was successfully produced:
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas 172676967 Jul 27 15:13 shared/HITS.pool.root.1
[2025-07-27 15:15:09]  *** Contents of shared directory: ***
[2025-07-27 15:15:09] total 402868
[2025-07-27 15:15:09] -rw-r--r--. 2 boincer umatlas 238403922 Jul 27 13:48 ATLAS.root_0
[2025-07-27 15:15:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:48 start_atlas.sh
[2025-07-27 15:15:09] -rw-r--r--. 2 boincer umatlas    542868 Jul 27 13:48 input.tar.gz
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas 172676967 Jul 27 15:13 HITS.pool.root.1
[2025-07-27 15:15:09] -rw-------. 1 boincer umatlas    880640 Jul 27 15:15 result.tar.gz
15:15:11 (582017): run_atlas exited; CPU time 54765.207123
15:15:11 (582017): called boinc_finish(0)

</stderr_txt>
]]>

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