Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:45:12 (254342): wrapper (7.7.26015): starting
13:45:12 (254342): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 13:45:12] Arguments: --nthreads 12
[2025-07-27 13:45:12] Threads: 12
[2025-07-27 13:45:12] Checking for CVMFS
[2025-07-27 13:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:45:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:45:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:45:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:45:12] 2.13.0.0 3229734 18680 338232 148819 3 255 27506918 40960001 11943 16776704 0 59724361 99.842 46703859 27902 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:45:12] CVMFS is ok
[2025-07-27 13:45:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:45:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:45:12] Further information can be found at the LHC@home message board.
[2025-07-27 13:45:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:45:12] Checking for apptainer binary...
[2025-07-27 13:45:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:45:12] Running /usr/bin/apptainer --version
[2025-07-27 13:45:12] apptainer version 1.4.1-1.el9
[2025-07-27 13:45:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:45:12] c6-5-7-4.aglt2.org
[2025-07-27 13:45:12] apptainer works
[2025-07-27 13:45:13] Set ATHENA_PROC_NUMBER=12
[2025-07-27 13:45:13] Set ATHENA_CORE_NUMBER=12
[2025-07-27 13:45:13] Starting ATLAS job with PandaID=6747376045
[2025-07-27 13:45:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:55:22]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:55:22]  protocol_id=None
[2025-07-27 14:55:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 14:55:22]  replicas=None
[2025-07-27 14:55:22]  scope=mc23_13p6TeV
[2025-07-27 14:55:22]  status=None
[2025-07-27 14:55:22]  status_code=0
[2025-07-27 14:55:22]  storage_token=
[2025-07-27 14:55:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747376045/log.45743349._047280.job.log.tgz.1
[2025-07-27 14:55:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/9a/log.45743349._047280.job.log.tgz.1
[2025-07-27 14:55:22]  workdir=None
[2025-07-27 14:55:22] ]
[2025-07-27 14:55:22] 2025-07-27 18:54:40,516 | INFO     | transferring file log.45743349._047280.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747376045/log.45743349._047280.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:55:22] 2025-07-27 18:54:40,516 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747376045/log.45743349._047280.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._047280.job
[2025-07-27 14:55:22] 2025-07-27 18:54:40,540 | INFO     | adding to output.list: log.45743349._047280.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/9a/log.45743349._047280.job.log.tg
[2025-07-27 14:55:22] 2025-07-27 18:54:40,540 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:55:22] 2025-07-27 18:54:40,541 | INFO     | summary of transferred files:
[2025-07-27 14:55:22] 2025-07-27 18:54:40,541 | INFO     |  -- lfn=log.45743349._047280.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:55:22] 2025-07-27 18:54:40,541 | INFO     | stage-out finished correctly
[2025-07-27 14:55:22] 2025-07-27 18:54:41,631 | INFO     | monitor loop #307: job 0:6747376045 is in state 'finished'
[2025-07-27 14:55:22] 2025-07-27 18:54:41,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:55:22] 2025-07-27 18:54:43,007 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:55:22] 2025-07-27 18:54:44,134 | INFO     | monitor loop #308: job 0:6747376045 is in state 'finished'
[2025-07-27 14:55:22] 2025-07-27 18:54:44,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:55:22] 2025-07-27 18:54:45,064 | INFO     | job 6747376045 has state=finished
[2025-07-27 14:55:22] 2025-07-27 18:54:45,065 | INFO     | preparing for final server update for job 6747376045 in state='finished'
[2025-07-27 14:55:22] 2025-07-27 18:54:45,065 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:55:22] 2025-07-27 18:54:45,065 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:55:22] 2025-07-27 18:54:45,066 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:55:22] 2025-07-27 18:54:45,066 | INFO     | job 6747376045 has finished - writing final server update
[2025-07-27 14:55:22] 2025-07-27 18:54:45,066 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:55:22] 2025-07-27 18:54:45,067 | INFO     | executing command: lscpu
[2025-07-27 14:55:22] 2025-07-27 18:54:45,115 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:55:22] 2025-07-27 18:54:46,638 | INFO     | monitor loop #309: job 0:6747376045 is in state 'finished'
[2025-07-27 14:55:22] 2025-07-27 18:54:46,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:55:22] 2025-07-27 18:54:49,141 | INFO     | monitor loop #310: job 0:6747376045 is in state 'finished'
[2025-07-27 14:55:22] 2025-07-27 18:54:49,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,011 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 14:55:22] 2025-07-27 18:54:50,019 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2788.705375
[2025-07-27 14:55:22] 2025-07-27 18:54:50,029 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747376045/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,029 | INFO     | extracted standard info from prmon json
[2025-07-27 14:55:22] 2025-07-27 18:54:50,030 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:55:22] 2025-07-27 18:54:50,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:55:22] 2025-07-27 18:54:50,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:55:22] 2025-07-27 18:54:50,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:55:22] 2025-07-27 18:54:50,032 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:55:22] 2025-07-27 18:54:50,032 | INFO     | sum of square deviations: 70364110.0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | sum of deviations: -6238964709.999995
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | mean x: 1753640490.0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | mean y: 2821094.2459016396
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | -- intersect: 155492617400.02023
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | intersect: 155492617400.02023
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | chi2: 0.1205596824871299
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | -- intersect: 155492617400.02023
[2025-07-27 14:55:22] 2025-07-27 18:54:50,033 | INFO     | current memory leak: -88.67 B/s (using 61 data points, chi2=0.12)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | could have reported an average CPU frequency of 2901 MHz (6 samples)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | ..............................
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . Timing measurements:
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . get job = 0 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . initial setup = 2 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . payload setup = 8 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . stage-in = 0 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . payload execution = 4126 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . stage-out = 0 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | . log creation = 0 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,034 | INFO     | ..............................
[2025-07-27 14:55:22] 2025-07-27 18:54:50,308 | INFO     | 
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | job summary report
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | --------------------------------------------------
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | PanDA job id: 6747376045
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | task id: 45743349
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | errors: (none)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | pilot state: finished 
[2025-07-27 14:55:22] 2025-07-27 18:54:50,309 | INFO     | transexitcode: 0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | exeerrorcode: 0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | exeerrordiag: 
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | exitcode: 0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | exitmsg: OK
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | cpuconsumptiontime: 43375 s
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | nevents: 400
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | neventsw: 0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | pid: 264796
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | pgrp: 264796
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | corecount: 12
[2025-07-27 14:55:22] 2025-07-27 18:54:50,310 | INFO     | event service: False
[2025-07-27 14:55:22] 2025-07-27 18:54:50,311 | INFO     | sizes: {0: 2397298, 1: 2397497, 6: 2397759, 11: 2397787, 4138: 2423621, 4140: 2432619, 4142: 2432803, 4149: 2432997}
[2025-07-27 14:55:22] 2025-07-27 18:54:50,311 | INFO     | --------------------------------------------------
[2025-07-27 14:55:22] 2025-07-27 18:54:50,311 | INFO     | 
[2025-07-27 14:55:22] 2025-07-27 18:54:50,311 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 14:55:22] 2025-07-27 18:54:50,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,338 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:55:22] 2025-07-27 18:54:50,339 | INFO     | job 6747376045 has completed (purged errors)
[2025-07-27 14:55:22] 2025-07-27 18:54:50,339 | INFO     | overall cleanup function is called
[2025-07-27 14:55:22] 2025-07-27 18:54:51,348 | INFO     | --- collectZombieJob: --- 10, [264796]
[2025-07-27 14:55:22] 2025-07-27 18:54:51,348 | INFO     | zombie collector waiting for pid 264796
[2025-07-27 14:55:22] 2025-07-27 18:54:51,348 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:55:22] 2025-07-27 18:54:51,348 | INFO     | collected zombie processes
[2025-07-27 14:55:22] 2025-07-27 18:54:51,348 | INFO     | will attempt to kill all subprocesses of pid=264796
[2025-07-27 14:55:22] 2025-07-27 18:54:51,608 | INFO     | process IDs to be killed: [264796] (in reverse order)
[2025-07-27 14:55:22] 2025-07-27 18:54:51,725 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:55:22] 2025-07-27 18:54:51,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:55:22] 2025-07-27 18:54:51,740 | INFO     | did not find any defunct processes belonging to 264796
[2025-07-27 14:55:22] 2025-07-27 18:54:51,755 | INFO     | did not find any defunct processes belonging to 264796
[2025-07-27 14:55:22] 2025-07-27 18:54:51,755 | INFO     | ready for new job
[2025-07-27 14:55:22] 2025-07-27 18:54:51,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:55:22] 2025-07-27 18:54:51,757 | INFO     | ***************************************
[2025-07-27 14:55:22] 2025-07-27 18:54:51,758 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:55:22] 2025-07-27 18:54:51,758 | INFO     | ***************************************
[2025-07-27 14:55:22] 2025-07-27 18:54:51,758 | INFO     | 
[2025-07-27 14:55:22] 2025-07-27 18:54:51,762 | INFO     | architecture information:
[2025-07-27 14:55:22] 2025-07-27 18:54:51,763 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:55:22] 2025-07-27 18:54:51,784 | INFO     | cat /etc/os-release:
[2025-07-27 14:55:22] NAME="CentOS Linux"
[2025-07-27 14:55:22] VERSION="7 (Core)"
[2025-07-27 14:55:22] ID="centos"
[2025-07-27 14:55:22] ID_LIKE="rhel fedora"
[2025-07-27 14:55:22] VERSION_ID="7"
[2025-07-27 14:55:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:55:22] ANSI_COLOR="0;31"
[2025-07-27 14:55:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:55:22] HOME_URL="https://www.centos.org/"
[2025-07-27 14:55:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:55:22] 
[2025-07-27 14:55:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:55:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:55:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:55:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:55:22] 
[2025-07-27 14:55:22] 2025-07-27 18:54:51,784 | INFO     | ***************************************
[2025-07-27 14:55:22] 2025-07-27 18:54:52,287 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 14:55:22] 2025-07-27 18:54:52,307 | INFO     | sufficient remaining disk space (75425120256 B)
[2025-07-27 14:55:22] 2025-07-27 18:54:52,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:55:22] 2025-07-27 18:54:52,308 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:55:22] 2025-07-27 18:54:52,308 | INFO     | update_server=False
[2025-07-27 14:55:22] 2025-07-27 18:54:52,308 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:55:22] 2025-07-27 18:54:52,582 | INFO     | all data control threads have been joined
[2025-07-27 14:55:22] 2025-07-27 18:54:52,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:55:22] 2025-07-27 18:54:52,650 | INFO     | aborting loop
[2025-07-27 14:55:22] 2025-07-27 18:54:53,284 | INFO     | all job control threads have been joined
[2025-07-27 14:55:22] 2025-07-27 18:54:53,314 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:53,338 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:53,419 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:53,588 | INFO     | [data] control thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:53,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:55:22] 2025-07-27 18:54:53,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:55:22] 2025-07-27 18:54:53,655 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:53,721 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:53,767 | INFO     | all payload control threads have been joined
[2025-07-27 14:55:22] 2025-07-27 18:54:53,945 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:54,083 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:54,289 | INFO     | [job] control thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:54,758 | INFO     | [job] validate thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:54,763 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:54,772 | INFO     | [payload] control thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:55,133 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:55:22] 2025-07-27 18:54:55,631 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:56,138 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:54:57,610 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:55:02,824 | INFO     | job.realtimelogging is not enabled
[2025-07-27 14:55:22] 2025-07-27 18:55:03,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:55:22] 2025-07-27 18:55:04,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986723084096)>', '<ExcThread(monitor, started 139985801967360)>']
[2025-07-27 14:55:22] 2025-07-27 18:55:09,654 | INFO     | all workflow threads have been joined
[2025-07-27 14:55:22] 2025-07-27 18:55:09,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:55:22] 2025-07-27 18:55:09,655 | INFO     | traces error code: 0
[2025-07-27 14:55:22] 2025-07-27 18:55:09,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:55:22] 2025-07-27 18:55:22,237 | INFO     | PID=258322 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 14:55:22] 2025-07-27 18:55:22,237 | INFO     | .. there are 13 such processes running
[2025-07-27 14:55:22] 2025-07-27 18:55:22,238 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:55:22] 2025-07-27 18:55:22,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:55:22] 2025-07-27 18:55:22,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:55:22] 2025-07-27 18:55:22,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:55:22] 2025-07-27 18:55:22,239 | INFO     | [monitor] control thread has ended
[2025-07-27 14:55:22] 2025-07-27 18:55:22,447 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:55:22] 2025-07-27 18:55:22,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:55:22] 2025-07-27 18:55:22,454 [wrapper] pilotpid: 258322
[2025-07-27 14:55:22] 2025-07-27 18:55:22,457 [wrapper] Pilot exit status: 0
[2025-07-27 14:55:22] 2025-07-27 18:55:22,470 [wrapper] pandaids: 6747376045
[2025-07-27 14:55:22] 2025-07-27 18:55:22,530 [wrapper] cleanup supervisor_pilot  402324 258323
[2025-07-27 14:55:22] 2025-07-27 18:55:22,534 [wrapper] Test setup, not cleaning
[2025-07-27 14:55:22] 2025-07-27 18:55:22,538 [wrapper] apfmon messages muted
[2025-07-27 14:55:22] 2025-07-27 18:55:22,541 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:55:22] 2025-07-27 18:55:22,545 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:55:22]  *** Error codes and diagnostics ***
[2025-07-27 14:55:22]     "exeErrorCode": 0,
[2025-07-27 14:55:22]     "exeErrorDiag": "",
[2025-07-27 14:55:22]     "pilotErrorCode": 0,
[2025-07-27 14:55:22]     "pilotErrorDiag": "",
[2025-07-27 14:55:22]  *** Listing of results directory ***
[2025-07-27 14:55:22] total 350336
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 06:53 pilot3.tar.gz
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 06:54 queuedata.json
[2025-07-27 14:55:22] -rwx------. 1 boincer umatlas     36292 Jul 27 06:56 runpilot2-wrapper.sh
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:55:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:45 run_atlas
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:45 job.xml
[2025-07-27 14:55:22] -rw-r--r--. 2 boincer umatlas 145431813 Jul 27 13:45 EVNT.45743347._002627.pool.root.1
[2025-07-27 14:55:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:45 start_atlas.sh
[2025-07-27 14:55:22] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:45 shared
[2025-07-27 14:55:22] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 13:45 input.tar.gz
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:45 boinc_lockfile
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas      2560 Jul 27 13:45 pandaJob.out
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas    980117 Jul 27 13:45 agis_schedconf.cvmfs.json
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:45 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:55:22] drwx------. 4 boincer umatlas      4096 Jul 27 13:45 pilot3
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas 207918186 Jul 27 14:54 HITS.45743349._047280.pool.root.1
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas       530 Jul 27 14:54 boinc_task_state.xml
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 14:54 init_data.xml
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas      1037 Jul 27 14:54 memory_monitor_summary.json
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas    343575 Jul 27 14:54 log.45743349._047280.job.log.tgz.1
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas      7818 Jul 27 14:54 heartbeat.json
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:55 boinc_mmap_file
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:55 wrapper_checkpoint.txt
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas       822 Jul 27 14:55 pilotlog.txt
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas        95 Jul 27 14:55 pilot_heartbeat.json
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas    418268 Jul 27 14:55 log.45743349._047280.job.log.1
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas       357 Jul 27 14:55 output.list
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:55 runtime_log
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas    778240 Jul 27 14:55 result.tar.gz
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 14:55 runtime_log.err
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas       654 Jul 27 14:55 l1ZKDmJEE07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmd4ULDmftmLXm.diag
[2025-07-27 14:55:22] -rw-r--r--. 1 boincer umatlas     21824 Jul 27 14:55 stderr.txt
[2025-07-27 14:55:22] HITS file was successfully produced:
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas 207918186 Jul 27 14:54 shared/HITS.pool.root.1
[2025-07-27 14:55:22]  *** Contents of shared directory: ***
[2025-07-27 14:55:22] total 346384
[2025-07-27 14:55:22] -rw-r--r--. 2 boincer umatlas 145431813 Jul 27 13:45 ATLAS.root_0
[2025-07-27 14:55:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:45 start_atlas.sh
[2025-07-27 14:55:22] -rw-r--r--. 2 boincer umatlas    542886 Jul 27 13:45 input.tar.gz
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas 207918186 Jul 27 14:54 HITS.pool.root.1
[2025-07-27 14:55:22] -rw-------. 1 boincer umatlas    778240 Jul 27 14:55 result.tar.gz
14:55:24 (254342): run_atlas exited; CPU time 43444.006773
14:55:24 (254342): called boinc_finish(0)

</stderr_txt>
]]>

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