Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:20:49 (1081958): wrapper (7.7.26015): starting
12:20:49 (1081958): wrapper: running run_atlas (--nthreads 10)
[2025-07-27 12:20:49] Arguments: --nthreads 10
[2025-07-27 12:20:49] Threads: 10
[2025-07-27 12:20:49] Checking for CVMFS
[2025-07-27 12:20:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:20:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:20:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:20:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:20:50] 2.13.1.0 129353 6932 118508 148818 3 64 14035721 39288832 3743 16776704 0 9041486 99.713 4295066 40868 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 12:20:50] CVMFS is ok
[2025-07-27 12:20:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:20:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:20:50] Further information can be found at the LHC@home message board.
[2025-07-27 12:20:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:20:50] Checking for apptainer binary...
[2025-07-27 12:20:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:20:50] Running /usr/bin/apptainer --version
[2025-07-27 12:20:50] apptainer version 1.4.1-1.el9
[2025-07-27 12:20:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:20:50] c-210-13.aglt2.org
[2025-07-27 12:20:50] apptainer works
[2025-07-27 12:20:50] Set ATHENA_PROC_NUMBER=10
[2025-07-27 12:20:50] Set ATHENA_CORE_NUMBER=10
[2025-07-27 12:20:50] Starting ATLAS job with PandaID=6746476243
[2025-07-27 12:20:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:59:39]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:59:39]  is_altstaged=None
[2025-07-27 13:59:39]  is_tar=False
[2025-07-27 13:59:39]  lfn=log.45743349._046217.job.log.tgz.1
[2025-07-27 13:59:39]  mtime=0
[2025-07-27 13:59:39]  protocol_id=None
[2025-07-27 13:59:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 13:59:39]  replicas=None
[2025-07-27 13:59:39]  scope=mc23_13p6TeV
[2025-07-27 13:59:39]  status=None
[2025-07-27 13:59:39]  status_code=0
[2025-07-27 13:59:39]  storage_token=
[2025-07-27 13:59:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746476243/log.45743349._046217.job.log.tgz.1
[2025-07-27 13:59:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/0f/log.45743349._046217.job.log.tgz.1
[2025-07-27 13:59:39]  workdir=None
[2025-07-27 13:59:39] ]
[2025-07-27 13:59:39] 2025-07-27 17:59:02,394 | INFO     | transferring file log.45743349._046217.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746476243/log.45743349._046217.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:59:39] 2025-07-27 17:59:02,394 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746476243/log.45743349._046217.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._046217.job
[2025-07-27 13:59:39] 2025-07-27 17:59:02,416 | INFO     | adding to output.list: log.45743349._046217.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/0f/log.45743349._046217.job.log.tg
[2025-07-27 13:59:39] 2025-07-27 17:59:02,417 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:59:39] 2025-07-27 17:59:02,418 | INFO     | summary of transferred files:
[2025-07-27 13:59:39] 2025-07-27 17:59:02,418 | INFO     |  -- lfn=log.45743349._046217.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:59:39] 2025-07-27 17:59:02,418 | INFO     | stage-out finished correctly
[2025-07-27 13:59:39] 2025-07-27 17:59:02,902 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:59:39] 2025-07-27 17:59:02,992 | INFO     | job 6746476243 has state=finished
[2025-07-27 13:59:39] 2025-07-27 17:59:02,993 | INFO     | preparing for final server update for job 6746476243 in state='finished'
[2025-07-27 13:59:39] 2025-07-27 17:59:02,993 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:59:39] 2025-07-27 17:59:02,993 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:59:39] 2025-07-27 17:59:02,993 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:59:39] 2025-07-27 17:59:02,994 | INFO     | job 6746476243 has finished - writing final server update
[2025-07-27 13:59:39] 2025-07-27 17:59:02,994 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:59:39] 2025-07-27 17:59:02,995 | INFO     | executing command: lscpu
[2025-07-27 13:59:39] 2025-07-27 17:59:03,045 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:59:39] 2025-07-27 17:59:03,986 | INFO     | monitor loop #440: job 0:6746476243 is in state 'finished'
[2025-07-27 13:59:39] 2025-07-27 17:59:03,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:59:39] 2025-07-27 17:59:06,490 | INFO     | monitor loop #441: job 0:6746476243 is in state 'finished'
[2025-07-27 13:59:39] 2025-07-27 17:59:06,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,008 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 13:59:39] 2025-07-27 17:59:07,014 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9000999999994
[2025-07-27 13:59:39] 2025-07-27 17:59:07,019 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746476243/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,020 | INFO     | extracted standard info from prmon json
[2025-07-27 13:59:39] 2025-07-27 17:59:07,020 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:59:39] 2025-07-27 17:59:07,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:59:39] 2025-07-27 17:59:07,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:59:39] 2025-07-27 17:59:07,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:59:39] 2025-07-27 17:59:07,022 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:59:39] 2025-07-27 17:59:07,023 | INFO     | sum of square deviations: 218571540.0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,023 | INFO     | sum of deviations: -22127357038.0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,023 | INFO     | mean x: 1753636279.0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,023 | INFO     | mean y: 2897722.595505618
[2025-07-27 13:59:39] 2025-07-27 17:59:07,024 | INFO     | -- intersect: 177534410106.24246
[2025-07-27 13:59:39] 2025-07-27 17:59:07,024 | INFO     | intersect: 177534410106.24246
[2025-07-27 13:59:39] 2025-07-27 17:59:07,024 | INFO     | chi2: 0.13428174414595181
[2025-07-27 13:59:39] 2025-07-27 17:59:07,024 | INFO     | -- intersect: 177534410106.24246
[2025-07-27 13:59:39] 2025-07-27 17:59:07,024 | INFO     | current memory leak: -101.24 B/s (using 89 data points, chi2=0.13)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,024 | INFO     | could have reported an average CPU frequency of 2599 MHz (7 samples)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | ..............................
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . Timing measurements:
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . get job = 0 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . initial setup = 2 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . payload setup = 7 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . stage-in = 0 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . payload execution = 5851 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . stage-out = 0 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | . log creation = 0 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,025 | INFO     | ..............................
[2025-07-27 13:59:39] 2025-07-27 17:59:07,116 | INFO     | 
[2025-07-27 13:59:39] 2025-07-27 17:59:07,116 | INFO     | job summary report
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | --------------------------------------------------
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | PanDA job id: 6746476243
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | task id: 45743349
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | errors: (none)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | pilot state: finished 
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | transexitcode: 0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | exeerrorcode: 0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | exeerrordiag: 
[2025-07-27 13:59:39] 2025-07-27 17:59:07,117 | INFO     | exitcode: 0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | exitmsg: OK
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | cpuconsumptiontime: 53890 s
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | nevents: 400
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | neventsw: 0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | pid: 1092132
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | pgrp: 1092132
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | corecount: 10
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | event service: False
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | sizes: {0: 2397309, 1: 2397451, 5: 2397713, 11: 2397769, 5862: 2424407, 5864: 2433405, 5865: 2433589, 5869: 2433783}
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | --------------------------------------------------
[2025-07-27 13:59:39] 2025-07-27 17:59:07,118 | INFO     | 
[2025-07-27 13:59:39] 2025-07-27 17:59:07,119 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:59:39] 2025-07-27 17:59:07,140 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,140 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,140 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,140 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,141 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:59:39] 2025-07-27 17:59:07,142 | INFO     | job 6746476243 has completed (purged errors)
[2025-07-27 13:59:39] 2025-07-27 17:59:07,143 | INFO     | overall cleanup function is called
[2025-07-27 13:59:39] 2025-07-27 17:59:08,151 | INFO     | --- collectZombieJob: --- 10, [1092132]
[2025-07-27 13:59:39] 2025-07-27 17:59:08,152 | INFO     | zombie collector waiting for pid 1092132
[2025-07-27 13:59:39] 2025-07-27 17:59:08,152 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:59:39] 2025-07-27 17:59:08,152 | INFO     | collected zombie processes
[2025-07-27 13:59:39] 2025-07-27 17:59:08,152 | INFO     | will attempt to kill all subprocesses of pid=1092132
[2025-07-27 13:59:39] 2025-07-27 17:59:08,397 | INFO     | process IDs to be killed: [1092132] (in reverse order)
[2025-07-27 13:59:39] 2025-07-27 17:59:08,461 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:59:39] 2025-07-27 17:59:08,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:59:39] 2025-07-27 17:59:08,468 | INFO     | did not find any defunct processes belonging to 1092132
[2025-07-27 13:59:39] 2025-07-27 17:59:08,474 | INFO     | did not find any defunct processes belonging to 1092132
[2025-07-27 13:59:39] 2025-07-27 17:59:08,474 | INFO     | ready for new job
[2025-07-27 13:59:39] 2025-07-27 17:59:08,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:59:39] 2025-07-27 17:59:08,476 | INFO     | ***************************************
[2025-07-27 13:59:39] 2025-07-27 17:59:08,476 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:59:39] 2025-07-27 17:59:08,476 | INFO     | ***************************************
[2025-07-27 13:59:39] 2025-07-27 17:59:08,476 | INFO     | 
[2025-07-27 13:59:39] 2025-07-27 17:59:08,478 | INFO     | architecture information:
[2025-07-27 13:59:39] 2025-07-27 17:59:08,478 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:59:39] 2025-07-27 17:59:08,491 | INFO     | cat /etc/os-release:
[2025-07-27 13:59:39] NAME="CentOS Linux"
[2025-07-27 13:59:39] VERSION="7 (Core)"
[2025-07-27 13:59:39] ID="centos"
[2025-07-27 13:59:39] ID_LIKE="rhel fedora"
[2025-07-27 13:59:39] VERSION_ID="7"
[2025-07-27 13:59:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:59:39] ANSI_COLOR="0;31"
[2025-07-27 13:59:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:59:39] HOME_URL="https://www.centos.org/"
[2025-07-27 13:59:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:59:39] 
[2025-07-27 13:59:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:59:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:59:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:59:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:59:39] 
[2025-07-27 13:59:39] 2025-07-27 17:59:08,492 | INFO     | ***************************************
[2025-07-27 13:59:39] 2025-07-27 17:59:08,994 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:59:39] 2025-07-27 17:59:09,012 | INFO     | sufficient remaining disk space (53826551808 B)
[2025-07-27 13:59:39] 2025-07-27 17:59:09,013 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:59:39] 2025-07-27 17:59:09,013 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:59:39] 2025-07-27 17:59:09,013 | INFO     | update_server=False
[2025-07-27 13:59:39] 2025-07-27 17:59:09,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:59:39] 2025-07-27 17:59:09,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:59:39] 2025-07-27 17:59:09,014 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:59:39] 2025-07-27 17:59:09,014 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:59:39] 2025-07-27 17:59:09,254 | INFO     | all payload control threads have been joined
[2025-07-27 13:59:39] 2025-07-27 17:59:09,865 | INFO     | all data control threads have been joined
[2025-07-27 13:59:39] 2025-07-27 17:59:09,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:59:39] 2025-07-27 17:59:09,998 | INFO     | aborting loop
[2025-07-27 13:59:39] 2025-07-27 17:59:10,018 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:10,019 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:10,259 | INFO     | [payload] control thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:10,469 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:10,668 | INFO     | all job control threads have been joined
[2025-07-27 13:59:39] 2025-07-27 17:59:10,804 | INFO     | [job] validate thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:10,810 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:10,869 | INFO     | [data] control thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,003 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,019 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,054 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,169 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,389 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,418 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:11,673 | INFO     | [job] control thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:13,019 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:20,031 | INFO     | job.realtimelogging is not enabled
[2025-07-27 13:59:39] 2025-07-27 17:59:21,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:59:39] 2025-07-27 17:59:22,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705466103616)>', '<ExcThread(monitor, started 140704957306624)>']
[2025-07-27 13:59:39] 2025-07-27 17:59:28,022 | INFO     | all workflow threads have been joined
[2025-07-27 13:59:39] 2025-07-27 17:59:28,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:59:39] 2025-07-27 17:59:28,023 | INFO     | traces error code: 0
[2025-07-27 13:59:39] 2025-07-27 17:59:28,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:59:39] 2025-07-27 17:59:39,306 | INFO     | PID=1085649 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 13:59:39] 2025-07-27 17:59:39,307 | INFO     | .. there are 6 such processes running
[2025-07-27 13:59:39] 2025-07-27 17:59:39,307 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:59:39] 2025-07-27 17:59:39,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:59:39] 2025-07-27 17:59:39,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:59:39] 2025-07-27 17:59:39,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:59:39] 2025-07-27 17:59:39,308 | INFO     | [monitor] control thread has ended
[2025-07-27 13:59:39] 2025-07-27 17:59:39,460 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:59:39] 2025-07-27 17:59:39,464 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:59:39] 2025-07-27 17:59:39,468 [wrapper] pilotpid: 1085649
[2025-07-27 13:59:39] 2025-07-27 17:59:39,471 [wrapper] Pilot exit status: 0
[2025-07-27 13:59:39] 2025-07-27 17:59:39,486 [wrapper] pandaids: 6746476243
[2025-07-27 13:59:39] 2025-07-27 17:59:39,529 [wrapper] cleanup supervisor_pilot 1168525 1085650
[2025-07-27 13:59:39] 2025-07-27 17:59:39,532 [wrapper] Test setup, not cleaning
[2025-07-27 13:59:39] 2025-07-27 17:59:39,535 [wrapper] apfmon messages muted
[2025-07-27 13:59:39] 2025-07-27 17:59:39,539 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:59:39] 2025-07-27 17:59:39,542 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:59:39]  *** Error codes and diagnostics ***
[2025-07-27 13:59:39]     "exeErrorCode": 0,
[2025-07-27 13:59:39]     "exeErrorDiag": "",
[2025-07-27 13:59:39]     "pilotErrorCode": 0,
[2025-07-27 13:59:39]     "pilotErrorDiag": "",
[2025-07-27 13:59:39]  *** Listing of results directory ***
[2025-07-27 13:59:39] total 438480
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 03:44 pilot3.tar.gz
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 03:54 queuedata.json
[2025-07-27 13:59:39] -rwx------. 1 boincer umatlas     36292 Jul 27 03:56 runpilot2-wrapper.sh
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:59:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:20 run_atlas
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:20 job.xml
[2025-07-27 13:59:39] -rw-r--r--. 2 boincer umatlas 227942240 Jul 27 12:20 EVNT.45743347._001239.pool.root.1
[2025-07-27 13:59:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:20 start_atlas.sh
[2025-07-27 13:59:39] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:20 shared
[2025-07-27 13:59:39] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 12:20 input.tar.gz
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:20 boinc_lockfile
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 12:20 pandaJob.out
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas    980125 Jul 27 12:20 agis_schedconf.cvmfs.json
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:21 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:59:39] drwx------. 4 boincer umatlas      4096 Jul 27 12:21 pilot3
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas      6658 Jul 27 13:55 init_data.xml
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas 215338697 Jul 27 13:58 HITS.45743349._046217.pool.root.1
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas       529 Jul 27 13:58 boinc_task_state.xml
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas        95 Jul 27 13:58 pilot_heartbeat.json
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas      1026 Jul 27 13:58 memory_monitor_summary.json
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas    348776 Jul 27 13:59 log.45743349._046217.job.log.tgz.1
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas      7812 Jul 27 13:59 heartbeat.json
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 13:59 boinc_mmap_file
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas        27 Jul 27 13:59 wrapper_checkpoint.txt
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas       822 Jul 27 13:59 pilotlog.txt
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas    574383 Jul 27 13:59 log.45743349._046217.job.log.1
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas       357 Jul 27 13:59 output.list
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas       620 Jul 27 13:59 runtime_log
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas    942080 Jul 27 13:59 result.tar.gz
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas       652 Jul 27 13:59 yhmMDmvPB07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlhULDml4wkhm.diag
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 13:59 runtime_log.err
[2025-07-27 13:59:39] -rw-r--r--. 1 boincer umatlas     21490 Jul 27 13:59 stderr.txt
[2025-07-27 13:59:39] HITS file was successfully produced:
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas 215338697 Jul 27 13:58 shared/HITS.pool.root.1
[2025-07-27 13:59:39]  *** Contents of shared directory: ***
[2025-07-27 13:59:39] total 434368
[2025-07-27 13:59:39] -rw-r--r--. 2 boincer umatlas 227942240 Jul 27 12:20 ATLAS.root_0
[2025-07-27 13:59:39] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:20 start_atlas.sh
[2025-07-27 13:59:39] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 12:20 input.tar.gz
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas 215338697 Jul 27 13:58 HITS.pool.root.1
[2025-07-27 13:59:39] -rw-------. 1 boincer umatlas    942080 Jul 27 13:59 result.tar.gz
13:59:41 (1081958): run_atlas exited; CPU time 53975.876584
13:59:41 (1081958): called boinc_finish(0)

</stderr_txt>
]]>

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