Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:33:02 (3099234): wrapper (7.7.26015): starting
13:33:02 (3099234): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 13:33:02] Arguments: --nthreads 12
[2025-07-27 13:33:02] Threads: 12
[2025-07-27 13:33:02] Checking for CVMFS
[2025-07-27 13:33:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 13:33:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 13:33:02] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 13:33:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 13:33:02] 2.12.6.0 2624825 18669 326720 148819 3 214 29412095 40960000 8582 16776704 0 57632565 99.789 51319294 31412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 13:33:02] CVMFS is ok
[2025-07-27 13:33:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 13:33:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 13:33:02] Further information can be found at the LHC@home message board.
[2025-07-27 13:33:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 13:33:02] Checking for apptainer binary...
[2025-07-27 13:33:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 13:33:02] Running /usr/bin/apptainer --version
[2025-07-27 13:33:02] apptainer version 1.4.1-1.el9
[2025-07-27 13:33:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 13:33:03] c6-8-12-1.aglt2.org
[2025-07-27 13:33:03] apptainer works
[2025-07-27 13:33:03] Set ATHENA_PROC_NUMBER=12
[2025-07-27 13:33:03] Set ATHENA_CORE_NUMBER=12
[2025-07-27 13:33:03] Starting ATLAS job with PandaID=6747412224
[2025-07-27 13:33:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:51:18]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:51:18]  mtime=0
[2025-07-27 14:51:18]  protocol_id=None
[2025-07-27 14:51:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 14:51:18]  replicas=None
[2025-07-27 14:51:18]  scope=mc23_13p6TeV
[2025-07-27 14:51:18]  status=None
[2025-07-27 14:51:18]  status_code=0
[2025-07-27 14:51:18]  storage_token=
[2025-07-27 14:51:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747412224/log.45743349._049326.job.log.tgz.1
[2025-07-27 14:51:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/f7/log.45743349._049326.job.log.tgz.1
[2025-07-27 14:51:18]  workdir=None
[2025-07-27 14:51:18] ]
[2025-07-27 14:51:18] 2025-07-27 18:50:36,709 | INFO     | transferring file log.45743349._049326.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747412224/log.45743349._049326.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:51:18] 2025-07-27 18:50:36,710 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747412224/log.45743349._049326.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._049326.job
[2025-07-27 14:51:18] 2025-07-27 18:50:36,721 | INFO     | monitor loop #336: job 0:6747412224 is in state 'stageout'
[2025-07-27 14:51:18] 2025-07-27 18:50:36,722 | WARNING  | aborting job monitor tasks since payload process 3112233 is not running
[2025-07-27 14:51:18] 2025-07-27 18:50:36,733 | INFO     | adding to output.list: log.45743349._049326.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/f7/log.45743349._049326.job.log.tg
[2025-07-27 14:51:18] 2025-07-27 18:50:36,734 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:51:18] 2025-07-27 18:50:36,734 | INFO     | summary of transferred files:
[2025-07-27 14:51:18] 2025-07-27 18:50:36,734 | INFO     |  -- lfn=log.45743349._049326.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:51:18] 2025-07-27 18:50:36,734 | INFO     | stage-out finished correctly
[2025-07-27 14:51:18] 2025-07-27 18:50:39,190 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:51:18] 2025-07-27 18:50:39,225 | INFO     | monitor loop #337: job 0:6747412224 is in state 'finished'
[2025-07-27 14:51:18] 2025-07-27 18:50:39,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:51:18] 2025-07-27 18:50:41,230 | INFO     | job 6747412224 has state=finished
[2025-07-27 14:51:18] 2025-07-27 18:50:41,230 | INFO     | preparing for final server update for job 6747412224 in state='finished'
[2025-07-27 14:51:18] 2025-07-27 18:50:41,231 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:51:18] 2025-07-27 18:50:41,231 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:51:18] 2025-07-27 18:50:41,231 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:51:18] 2025-07-27 18:50:41,231 | INFO     | job 6747412224 has finished - writing final server update
[2025-07-27 14:51:18] 2025-07-27 18:50:41,232 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:51:18] 2025-07-27 18:50:41,234 | INFO     | executing command: lscpu
[2025-07-27 14:51:18] 2025-07-27 18:50:41,300 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:51:18] 2025-07-27 18:50:41,755 | INFO     | monitor loop #338: job 0:6747412224 is in state 'finished'
[2025-07-27 14:51:18] 2025-07-27 18:50:41,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:51:18] 2025-07-27 18:50:44,260 | INFO     | monitor loop #339: job 0:6747412224 is in state 'finished'
[2025-07-27 14:51:18] 2025-07-27 18:50:44,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,670 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 14:51:18] 2025-07-27 18:50:46,681 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2756.9526428571435
[2025-07-27 14:51:18] 2025-07-27 18:50:46,693 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747412224/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,694 | INFO     | extracted standard info from prmon json
[2025-07-27 14:51:18] 2025-07-27 18:50:46,694 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:51:18] 2025-07-27 18:50:46,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:51:18] 2025-07-27 18:50:46,695 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:51:18] 2025-07-27 18:50:46,695 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | sum of square deviations: 101847552.9855073
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | sum of deviations: -9849448864.608696
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | mean x: 1753640005.0144928
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | mean y: 2506480.6086956523
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | -- intersect: 169593105861.82516
[2025-07-27 14:51:18] 2025-07-27 18:50:46,697 | INFO     | intersect: 169593105861.82516
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | chi2: 0.2572338762382323
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | -- intersect: 169593105861.82516
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | current memory leak: -96.71 B/s (using 69 data points, chi2=0.26)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | could have reported an average CPU frequency of 2759 MHz (6 samples)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | ..............................
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | . Timing measurements:
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | . get job = 0 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,698 | INFO     | . initial setup = 2 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,699 | INFO     | . payload setup = 8 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,699 | INFO     | . stage-in = 0 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,699 | INFO     | . payload execution = 4610 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,699 | INFO     | . stage-out = 0 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,699 | INFO     | . log creation = 0 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,699 | INFO     | ..............................
[2025-07-27 14:51:18] 2025-07-27 18:50:46,782 | INFO     | 
[2025-07-27 14:51:18] 2025-07-27 18:50:46,782 | INFO     | job summary report
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | --------------------------------------------------
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | PanDA job id: 6747412224
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | task id: 45743349
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | errors: (none)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | pilot state: finished 
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | transexitcode: 0
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | exeerrorcode: 0
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | exeerrordiag: 
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | exitcode: 0
[2025-07-27 14:51:18] 2025-07-27 18:50:46,783 | INFO     | exitmsg: OK
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | cpuconsumptiontime: 45699 s
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | nevents: 400
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | neventsw: 0
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | pid: 3112233
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | pgrp: 3112233
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | corecount: 12
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | event service: False
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | sizes: {0: 2397361, 1: 2397503, 6: 2397765, 11: 2397793, 4621: 2423844, 4622: 2423843, 4624: 2433025, 4626: 2433081, 4634: 2433275}
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | --------------------------------------------------
[2025-07-27 14:51:18] 2025-07-27 18:50:46,784 | INFO     | 
[2025-07-27 14:51:18] 2025-07-27 18:50:46,785 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 14:51:18] 2025-07-27 18:50:46,809 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,809 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,810 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:51:18] 2025-07-27 18:50:46,811 | INFO     | job 6747412224 has completed (purged errors)
[2025-07-27 14:51:18] 2025-07-27 18:50:46,812 | INFO     | overall cleanup function is called
[2025-07-27 14:51:18] 2025-07-27 18:50:47,821 | INFO     | --- collectZombieJob: --- 10, [3112233]
[2025-07-27 14:51:18] 2025-07-27 18:50:47,821 | INFO     | zombie collector waiting for pid 3112233
[2025-07-27 14:51:18] 2025-07-27 18:50:47,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:51:18] 2025-07-27 18:50:47,821 | INFO     | collected zombie processes
[2025-07-27 14:51:18] 2025-07-27 18:50:47,821 | INFO     | will attempt to kill all subprocesses of pid=3112233
[2025-07-27 14:51:18] 2025-07-27 18:50:48,073 | INFO     | process IDs to be killed: [3112233] (in reverse order)
[2025-07-27 14:51:18] 2025-07-27 18:50:48,172 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:51:18] 2025-07-27 18:50:48,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:51:18] 2025-07-27 18:50:48,185 | INFO     | did not find any defunct processes belonging to 3112233
[2025-07-27 14:51:18] 2025-07-27 18:50:48,194 | INFO     | did not find any defunct processes belonging to 3112233
[2025-07-27 14:51:18] 2025-07-27 18:50:48,195 | INFO     | ready for new job
[2025-07-27 14:51:18] 2025-07-27 18:50:48,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:51:18] 2025-07-27 18:50:48,196 | INFO     | ***************************************
[2025-07-27 14:51:18] 2025-07-27 18:50:48,196 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:51:18] 2025-07-27 18:50:48,196 | INFO     | ***************************************
[2025-07-27 14:51:18] 2025-07-27 18:50:48,196 | INFO     | 
[2025-07-27 14:51:18] 2025-07-27 18:50:48,211 | INFO     | architecture information:
[2025-07-27 14:51:18] 2025-07-27 18:50:48,211 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:51:18] 2025-07-27 18:50:48,230 | INFO     | cat /etc/os-release:
[2025-07-27 14:51:18] NAME="CentOS Linux"
[2025-07-27 14:51:18] VERSION="7 (Core)"
[2025-07-27 14:51:18] ID="centos"
[2025-07-27 14:51:18] ID_LIKE="rhel fedora"
[2025-07-27 14:51:18] VERSION_ID="7"
[2025-07-27 14:51:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:51:18] ANSI_COLOR="0;31"
[2025-07-27 14:51:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:51:18] HOME_URL="https://www.centos.org/"
[2025-07-27 14:51:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:51:18] 
[2025-07-27 14:51:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:51:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:51:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:51:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:51:18] 
[2025-07-27 14:51:18] 2025-07-27 18:50:48,231 | INFO     | ***************************************
[2025-07-27 14:51:18] 2025-07-27 18:50:48,734 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 14:51:18] 2025-07-27 18:50:48,754 | INFO     | sufficient remaining disk space (58555629568 B)
[2025-07-27 14:51:18] 2025-07-27 18:50:48,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:51:18] 2025-07-27 18:50:48,755 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:51:18] 2025-07-27 18:50:48,755 | INFO     | update_server=False
[2025-07-27 14:51:18] 2025-07-27 18:50:48,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:51:18] 2025-07-27 18:50:48,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:51:18] 2025-07-27 18:50:48,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:51:18] 2025-07-27 18:50:48,756 | INFO     | aborting loop
[2025-07-27 14:51:18] 2025-07-27 18:50:49,421 | INFO     | all payload control threads have been joined
[2025-07-27 14:51:18] 2025-07-27 18:50:49,504 | INFO     | all job control threads have been joined
[2025-07-27 14:51:18] 2025-07-27 18:50:49,607 | INFO     | all data control threads have been joined
[2025-07-27 14:51:18] 2025-07-27 18:50:49,760 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:49,762 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:49,763 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:49,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:51:18] 2025-07-27 18:50:49,805 | INFO     | [job] validate thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:49,815 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:49,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:51:18] 2025-07-27 18:50:49,868 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:49,969 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,120 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,428 | INFO     | [payload] control thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,450 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,510 | INFO     | [job] control thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,613 | INFO     | [data] control thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,662 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:50,862 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:51,837 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:53,791 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:51:18] 2025-07-27 18:50:53,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505829582656)>', '<ExcThread(monitor, started 140505207789312)>']
[2025-07-27 14:51:18] 2025-07-27 18:50:58,853 | INFO     | all workflow threads have been joined
[2025-07-27 14:51:18] 2025-07-27 18:50:58,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:51:18] 2025-07-27 18:50:58,854 | INFO     | traces error code: 0
[2025-07-27 14:51:18] 2025-07-27 18:50:58,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:51:18] 2025-07-27 18:51:18,582 | INFO     | PID=3102868 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:51:18] 2025-07-27 18:51:18,582 | INFO     | .. there are 10 such processes running
[2025-07-27 14:51:18] 2025-07-27 18:51:18,582 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:51:18] 2025-07-27 18:51:18,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:51:18] 2025-07-27 18:51:18,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:51:18] 2025-07-27 18:51:18,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:51:18] 2025-07-27 18:51:18,583 | INFO     | [monitor] control thread has ended
[2025-07-27 14:51:18] 2025-07-27 18:51:18,736 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:51:18] 2025-07-27 18:51:18,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:51:18] 2025-07-27 18:51:18,743 [wrapper] pilotpid: 3102868
[2025-07-27 14:51:18] 2025-07-27 18:51:18,748 [wrapper] Pilot exit status: 0
[2025-07-27 14:51:18] 2025-07-27 18:51:18,762 [wrapper] pandaids: 6747412224
[2025-07-27 14:51:18] 2025-07-27 18:51:18,828 [wrapper] cleanup supervisor_pilot 3374782 3102869
[2025-07-27 14:51:18] 2025-07-27 18:51:18,832 [wrapper] Test setup, not cleaning
[2025-07-27 14:51:18] 2025-07-27 18:51:18,836 [wrapper] apfmon messages muted
[2025-07-27 14:51:18] 2025-07-27 18:51:18,840 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:51:18] 2025-07-27 18:51:18,845 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:51:18]  *** Error codes and diagnostics ***
[2025-07-27 14:51:18]     "exeErrorCode": 0,
[2025-07-27 14:51:18]     "exeErrorDiag": "",
[2025-07-27 14:51:18]     "pilotErrorCode": 0,
[2025-07-27 14:51:18]     "pilotErrorDiag": "",
[2025-07-27 14:51:18]  *** Listing of results directory ***
[2025-07-27 14:51:18] total 438736
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 09:04 pilot3.tar.gz
[2025-07-27 14:51:18] -rwx------. 1 boincer umatlas     36292 Jul 27 09:41 runpilot2-wrapper.sh
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 09:41 queuedata.json
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas       100 Jul 27 13:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:51:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 13:33 run_atlas
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas       105 Jul 27 13:33 job.xml
[2025-07-27 14:51:18] -rw-r--r--. 2 boincer umatlas 229568299 Jul 27 13:33 EVNT.45743347._002724.pool.root.1
[2025-07-27 14:51:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:33 start_atlas.sh
[2025-07-27 14:51:18] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 13:33 shared
[2025-07-27 14:51:18] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 13:33 input.tar.gz
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas         0 Jul 27 13:33 boinc_lockfile
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 13:33 pandaJob.out
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas    980117 Jul 27 13:33 agis_schedconf.cvmfs.json
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas   1593052 Jul 27 13:33 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:51:18] drwx------. 4 boincer umatlas      4096 Jul 27 13:33 pilot3
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 14:47 init_data.xml
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas 214199525 Jul 27 14:49 HITS.45743349._049326.pool.root.1
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas       529 Jul 27 14:50 boinc_task_state.xml
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas      1036 Jul 27 14:50 memory_monitor_summary.json
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas        95 Jul 27 14:50 pilot_heartbeat.json
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas    357898 Jul 27 14:50 log.45743349._049326.job.log.tgz.1
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas      7822 Jul 27 14:50 heartbeat.json
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:51 boinc_mmap_file
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:51 wrapper_checkpoint.txt
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas       823 Jul 27 14:51 pilotlog.txt
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas    454775 Jul 27 14:51 log.45743349._049326.job.log.1
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas       357 Jul 27 14:51 output.list
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:51 runtime_log
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas    829440 Jul 27 14:51 result.tar.gz
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 14:51 runtime_log.err
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas       655 Jul 27 14:51 gqvLDmOoG07n9Rq4apOajLDm4fhM0noT9bVof3QYDmuc2KDmEVZJzn.diag
[2025-07-27 14:51:18] -rw-r--r--. 1 boincer umatlas     21800 Jul 27 14:51 stderr.txt
[2025-07-27 14:51:18] HITS file was successfully produced:
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas 214199525 Jul 27 14:49 shared/HITS.pool.root.1
[2025-07-27 14:51:18]  *** Contents of shared directory: ***
[2025-07-27 14:51:18] total 434732
[2025-07-27 14:51:18] -rw-r--r--. 2 boincer umatlas 229568299 Jul 27 13:33 ATLAS.root_0
[2025-07-27 14:51:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 13:33 start_atlas.sh
[2025-07-27 14:51:18] -rw-r--r--. 2 boincer umatlas    542896 Jul 27 13:33 input.tar.gz
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas 214199525 Jul 27 14:49 HITS.pool.root.1
[2025-07-27 14:51:18] -rw-------. 1 boincer umatlas    829440 Jul 27 14:51 result.tar.gz
14:51:20 (3099234): run_atlas exited; CPU time 45770.558655
14:51:20 (3099234): called boinc_finish(0)

</stderr_txt>
]]>

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