Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:47:34 (7101): wrapper (7.7.26015): starting
11:47:34 (7101): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:47:34] Arguments: --nthreads 12
[2025-07-27 11:47:34] Threads: 12
[2025-07-27 11:47:34] Checking for CVMFS
[2025-07-27 11:47:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:47:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:47:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:47:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:47:34] 2.11.2.0 2979 112201 103096 148817 1 57 15844272 20275201 1 130560 0 38271340 99.971 9524639 10577 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 11:47:34] CVMFS is ok
[2025-07-27 11:47:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:47:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:47:34] Further information can be found at the LHC@home message board.
[2025-07-27 11:47:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:47:34] Checking for apptainer binary...
[2025-07-27 11:47:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:47:34] Running /usr/bin/apptainer --version
[2025-07-27 11:47:34] apptainer version 1.3.2-1.el7
[2025-07-27 11:47:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:47:36] c-205-7.aglt2.org
[2025-07-27 11:47:36] apptainer works
[2025-07-27 11:47:36] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:47:36] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:47:36] Starting ATLAS job with PandaID=6747374686
[2025-07-27 11:47:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:06:45]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:06:45]  protocol_id=None
[2025-07-27 13:06:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 13:06:45]  replicas=None
[2025-07-27 13:06:45]  scope=mc23_13p6TeV
[2025-07-27 13:06:45]  status=None
[2025-07-27 13:06:45]  status_code=0
[2025-07-27 13:06:45]  storage_token=
[2025-07-27 13:06:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747374686/log.45743349._046846.job.log.tgz.1
[2025-07-27 13:06:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/d2/log.45743349._046846.job.log.tgz.1
[2025-07-27 13:06:45]  workdir=None
[2025-07-27 13:06:45] ]
[2025-07-27 13:06:45] 2025-07-27 17:06:06,883 | INFO     | transferring file log.45743349._046846.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747374686/log.45743349._046846.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:06:45] 2025-07-27 17:06:06,883 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747374686/log.45743349._046846.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._046846.job
[2025-07-27 13:06:45] 2025-07-27 17:06:06,905 | INFO     | adding to output.list: log.45743349._046846.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/d2/log.45743349._046846.job.log.tg
[2025-07-27 13:06:45] 2025-07-27 17:06:06,906 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:06:45] 2025-07-27 17:06:06,906 | INFO     | summary of transferred files:
[2025-07-27 13:06:45] 2025-07-27 17:06:06,906 | INFO     |  -- lfn=log.45743349._046846.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:06:45] 2025-07-27 17:06:06,907 | INFO     | stage-out finished correctly
[2025-07-27 13:06:45] 2025-07-27 17:06:06,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:06:45] 2025-07-27 17:06:08,535 | INFO     | job 6747374686 has state=finished
[2025-07-27 13:06:45] 2025-07-27 17:06:08,536 | INFO     | preparing for final server update for job 6747374686 in state='finished'
[2025-07-27 13:06:45] 2025-07-27 17:06:08,536 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:06:45] 2025-07-27 17:06:08,536 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:06:45] 2025-07-27 17:06:08,537 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:06:45] 2025-07-27 17:06:08,537 | INFO     | job 6747374686 has finished - writing final server update
[2025-07-27 13:06:45] 2025-07-27 17:06:08,537 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:06:45] 2025-07-27 17:06:08,538 | INFO     | executing command: lscpu
[2025-07-27 13:06:45] 2025-07-27 17:06:08,562 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:06:45] 2025-07-27 17:06:10,273 | WARNING  | process 17215 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 13:06:45] 2025-07-27 17:06:10,273 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747374686/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:06:45] 2025-07-27 17:06:10,360 | INFO     | number of running child processes to parent process 17215: 1
[2025-07-27 13:06:45] 2025-07-27 17:06:10,361 | INFO     | maximum number of monitored processes: 6
[2025-07-27 13:06:45] 2025-07-27 17:06:12,864 | INFO     | monitor loop #350: job 0:6747374686 is in state 'finished'
[2025-07-27 13:06:45] 2025-07-27 17:06:12,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:06:45] 2025-07-27 17:06:12,866 | INFO     | PID=10692 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 13:06:45] 2025-07-27 17:06:13,533 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 13:06:45] 2025-07-27 17:06:13,536 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-07-27 13:06:45] 2025-07-27 17:06:13,538 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747374686/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:06:45] 2025-07-27 17:06:13,539 | INFO     | extracted standard info from prmon json
[2025-07-27 13:06:45] 2025-07-27 17:06:13,539 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:06:45] 2025-07-27 17:06:13,539 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:06:45] 2025-07-27 17:06:13,539 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:06:45] 2025-07-27 17:06:13,539 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:06:45] 2025-07-27 17:06:13,541 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:06:45] 2025-07-27 17:06:13,541 | INFO     | sum of square deviations: 106336877.5
[2025-07-27 13:06:45] 2025-07-27 17:06:13,541 | INFO     | sum of deviations: -8217379906.0
[2025-07-27 13:06:45] 2025-07-27 17:06:13,541 | INFO     | mean x: 1753633709.5
[2025-07-27 13:06:45] 2025-07-27 17:06:13,541 | INFO     | mean y: 2770513.4
[2025-07-27 13:06:45] 2025-07-27 17:06:13,542 | INFO     | -- intersect: 135518075699.31296
[2025-07-27 13:06:45] 2025-07-27 17:06:13,542 | INFO     | intersect: 135518075699.31296
[2025-07-27 13:06:45] 2025-07-27 17:06:13,542 | INFO     | chi2: 0.059465245654744266
[2025-07-27 13:06:45] 2025-07-27 17:06:13,542 | INFO     | -- intersect: 135518075699.31296
[2025-07-27 13:06:45] 2025-07-27 17:06:13,542 | INFO     | current memory leak: -77.28 B/s (using 70 data points, chi2=0.06)
[2025-07-27 13:06:45] 2025-07-27 17:06:13,542 | INFO     | could have reported an average CPU frequency of 2039 MHz (6 samples)
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | ..............................
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . Timing measurements:
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . get job = 0 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . initial setup = 2 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . payload setup = 9 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . stage-in = 0 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . payload execution = 4667 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . stage-out = 0 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | . log creation = 0 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,543 | INFO     | ..............................
[2025-07-27 13:06:45] 2025-07-27 17:06:13,627 | INFO     | 
[2025-07-27 13:06:45] 2025-07-27 17:06:13,627 | INFO     | job summary report
[2025-07-27 13:06:45] 2025-07-27 17:06:13,627 | INFO     | --------------------------------------------------
[2025-07-27 13:06:45] 2025-07-27 17:06:13,628 | INFO     | PanDA job id: 6747374686
[2025-07-27 13:06:45] 2025-07-27 17:06:13,628 | INFO     | task id: 45743349
[2025-07-27 13:06:45] 2025-07-27 17:06:13,628 | INFO     | errors: (none)
[2025-07-27 13:06:45] 2025-07-27 17:06:13,628 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:06:45] 2025-07-27 17:06:13,628 | INFO     | pilot state: finished 
[2025-07-27 13:06:45] 2025-07-27 17:06:13,628 | INFO     | transexitcode: 0
[2025-07-27 13:06:45] 2025-07-27 17:06:13,629 | INFO     | exeerrorcode: 0
[2025-07-27 13:06:45] 2025-07-27 17:06:13,629 | INFO     | exeerrordiag: 
[2025-07-27 13:06:45] 2025-07-27 17:06:13,629 | INFO     | exitcode: 0
[2025-07-27 13:06:45] 2025-07-27 17:06:13,629 | INFO     | exitmsg: OK
[2025-07-27 13:06:45] 2025-07-27 17:06:13,629 | INFO     | cpuconsumptiontime: 51141 s
[2025-07-27 13:06:45] 2025-07-27 17:06:13,629 | INFO     | nevents: 400
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | neventsw: 0
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | pid: 17215
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | pgrp: 17215
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | corecount: 12
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | event service: False
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | sizes: {0: 2397423, 5: 2397685, 11: 2397741, 4680: 2423929, 4681: 2432983, 4688: 2433121}
[2025-07-27 13:06:45] 2025-07-27 17:06:13,630 | INFO     | --------------------------------------------------
[2025-07-27 13:06:45] 2025-07-27 17:06:13,631 | INFO     | 
[2025-07-27 13:06:45] 2025-07-27 17:06:13,631 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:06:45] 2025-07-27 17:06:13,654 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,655 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,655 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,655 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,655 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,657 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:06:45] 2025-07-27 17:06:13,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,658 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:06:45] 2025-07-27 17:06:13,658 | INFO     | job 6747374686 has completed (purged errors)
[2025-07-27 13:06:45] 2025-07-27 17:06:13,658 | INFO     | overall cleanup function is called
[2025-07-27 13:06:45] 2025-07-27 17:06:14,666 | INFO     | --- collectZombieJob: --- 10, [17215]
[2025-07-27 13:06:45] 2025-07-27 17:06:14,666 | INFO     | zombie collector waiting for pid 17215
[2025-07-27 13:06:45] 2025-07-27 17:06:14,666 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:06:45] 2025-07-27 17:06:14,667 | INFO     | collected zombie processes
[2025-07-27 13:06:45] 2025-07-27 17:06:14,667 | INFO     | will attempt to kill all subprocesses of pid=17215
[2025-07-27 13:06:45] 2025-07-27 17:06:14,760 | INFO     | process IDs to be killed: [17215] (in reverse order)
[2025-07-27 13:06:45] 2025-07-27 17:06:14,813 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:06:45] 2025-07-27 17:06:14,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:06:45] 2025-07-27 17:06:14,816 | INFO     | did not find any defunct processes belonging to 17215
[2025-07-27 13:06:45] 2025-07-27 17:06:14,819 | INFO     | did not find any defunct processes belonging to 17215
[2025-07-27 13:06:45] 2025-07-27 17:06:14,819 | INFO     | ready for new job
[2025-07-27 13:06:45] 2025-07-27 17:06:14,819 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:06:45] 2025-07-27 17:06:14,820 | INFO     | ***************************************
[2025-07-27 13:06:45] 2025-07-27 17:06:14,820 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:06:45] 2025-07-27 17:06:14,820 | INFO     | ***************************************
[2025-07-27 13:06:45] 2025-07-27 17:06:14,820 | INFO     | 
[2025-07-27 13:06:45] 2025-07-27 17:06:14,821 | INFO     | architecture information:
[2025-07-27 13:06:45] 2025-07-27 17:06:14,821 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:06:45] 2025-07-27 17:06:14,838 | INFO     | cat /etc/os-release:
[2025-07-27 13:06:45] NAME="CentOS Linux"
[2025-07-27 13:06:45] VERSION="7 (Core)"
[2025-07-27 13:06:45] ID="centos"
[2025-07-27 13:06:45] ID_LIKE="rhel fedora"
[2025-07-27 13:06:45] VERSION_ID="7"
[2025-07-27 13:06:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:06:45] ANSI_COLOR="0;31"
[2025-07-27 13:06:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:06:45] HOME_URL="https://www.centos.org/"
[2025-07-27 13:06:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:06:45] 
[2025-07-27 13:06:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:06:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:06:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:06:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:06:45] 
[2025-07-27 13:06:45] 2025-07-27 17:06:14,838 | INFO     | ***************************************
[2025-07-27 13:06:45] 2025-07-27 17:06:15,341 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:06:45] 2025-07-27 17:06:15,359 | INFO     | sufficient remaining disk space (29521608704 B)
[2025-07-27 13:06:45] 2025-07-27 17:06:15,360 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:06:45] 2025-07-27 17:06:15,360 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:06:45] 2025-07-27 17:06:15,360 | INFO     | update_server=False
[2025-07-27 13:06:45] 2025-07-27 17:06:15,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:06:45] 2025-07-27 17:06:15,361 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:06:45] 2025-07-27 17:06:15,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:06:45] 2025-07-27 17:06:15,367 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 13:06:45] 2025-07-27 17:06:15,367 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 13:06:45] 2025-07-27 17:06:15,367 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:06:45] 2025-07-27 17:06:15,367 | INFO     | will abort loop
[2025-07-27 13:06:45] 2025-07-27 17:06:15,484 | INFO     | all data control threads have been joined
[2025-07-27 13:06:45] 2025-07-27 17:06:16,366 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:16,366 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:16,370 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:16,379 | INFO     | all payload control threads have been joined
[2025-07-27 13:06:45] 2025-07-27 17:06:16,489 | INFO     | [data] control thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:16,609 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:16,762 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:16,980 | INFO     | all job control threads have been joined
[2025-07-27 13:06:45] 2025-07-27 17:06:17,174 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,367 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,384 | INFO     | [payload] control thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,431 | INFO     | [job] validate thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,438 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,581 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:06:45] 2025-07-27 17:06:17,730 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,919 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:17,985 | INFO     | [job] control thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:21,587 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:25,773 | INFO     | job.realtimelogging is not enabled
[2025-07-27 13:06:45] 2025-07-27 17:06:26,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:06:45] 2025-07-27 17:06:28,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069260273472)>', '<ExcThread(monitor, started 140068060649216)>']
[2025-07-27 13:06:45] 2025-07-27 17:06:33,660 | INFO     | all workflow threads have been joined
[2025-07-27 13:06:45] 2025-07-27 17:06:33,660 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:06:45] 2025-07-27 17:06:33,660 | INFO     | traces error code: 0
[2025-07-27 13:06:45] 2025-07-27 17:06:33,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:06:45] 2025-07-27 17:06:45,059 | INFO     | PID=10692 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 13:06:45] 2025-07-27 17:06:45,059 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:06:45] 2025-07-27 17:06:45,059 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:06:45] 2025-07-27 17:06:45,059 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:06:45] 2025-07-27 17:06:45,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:06:45] 2025-07-27 17:06:45,059 | INFO     | [monitor] control thread has ended
[2025-07-27 13:06:45] 2025-07-27 17:06:45,153 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:06:45] 2025-07-27 17:06:45,157 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:06:45] 2025-07-27 17:06:45,161 [wrapper] pilotpid: 10692
[2025-07-27 13:06:45] 2025-07-27 17:06:45,165 [wrapper] Pilot exit status: 0
[2025-07-27 13:06:45] 2025-07-27 17:06:45,181 [wrapper] pandaids: 6747374686
[2025-07-27 13:06:45] 2025-07-27 17:06:45,223 [wrapper] cleanup supervisor_pilot  5033 10693
[2025-07-27 13:06:45] 2025-07-27 17:06:45,227 [wrapper] Test setup, not cleaning
[2025-07-27 13:06:45] 2025-07-27 17:06:45,231 [wrapper] apfmon messages muted
[2025-07-27 13:06:45] 2025-07-27 17:06:45,235 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:06:45] 2025-07-27 17:06:45,239 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:06:45]  *** Error codes and diagnostics ***
[2025-07-27 13:06:45]     "exeErrorCode": 0,
[2025-07-27 13:06:45]     "exeErrorDiag": "",
[2025-07-27 13:06:45]     "pilotErrorCode": 0,
[2025-07-27 13:06:45]     "pilotErrorDiag": "",
[2025-07-27 13:06:45]  *** Listing of results directory ***
[2025-07-27 13:06:45] total 346440
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 06:10 pilot3.tar.gz
[2025-07-27 13:06:45] -rwx------ 1 boincer umatlas     36292 Jul 27 06:25 runpilot2-wrapper.sh
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 06:25 queuedata.json
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas       100 Jul 27 11:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:06:45] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 11:47 run_atlas
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas       105 Jul 27 11:47 job.xml
[2025-07-27 13:06:45] -rw-r--r-- 2 boincer umatlas 146097038 Jul 27 11:47 EVNT.45743347._000835.pool.root.1
[2025-07-27 13:06:45] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:47 start_atlas.sh
[2025-07-27 13:06:45] drwxrwx--x 2 boincer umatlas      4096 Jul 27 11:47 shared
[2025-07-27 13:06:45] -rw-r--r-- 2 boincer umatlas    542895 Jul 27 11:47 input.tar.gz
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas         0 Jul 27 11:47 boinc_lockfile
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas      2562 Jul 27 11:47 pandaJob.out
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas    980101 Jul 27 11:47 agis_schedconf.cvmfs.json
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas   1593052 Jul 27 11:47 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:06:45] drwx------ 4 boincer umatlas      4096 Jul 27 11:47 pilot3
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas      5867 Jul 27 13:04 init_data.xml
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas 203157933 Jul 27 13:05 HITS.45743349._046846.pool.root.1
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas        95 Jul 27 13:05 pilot_heartbeat.json
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas       530 Jul 27 13:05 boinc_task_state.xml
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas      1061 Jul 27 13:06 memory_monitor_summary.json
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas    357529 Jul 27 13:06 log.45743349._046846.job.log.tgz.1
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas      7846 Jul 27 13:06 heartbeat.json
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 13:06 boinc_mmap_file
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas        27 Jul 27 13:06 wrapper_checkpoint.txt
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas       745 Jul 27 13:06 pilotlog.txt
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas    450160 Jul 27 13:06 log.45743349._046846.job.log.1
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas       357 Jul 27 13:06 output.list
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas       620 Jul 27 13:06 runtime_log
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas    829440 Jul 27 13:06 result.tar.gz
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas      8657 Jul 27 13:06 runtime_log.err
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas       658 Jul 27 13:06 76wMDmHkD07n9Rq4apOajLDm4fhM0noT9bVof3QYDmkO2KDmCqfGwm.diag
[2025-07-27 13:06:45] -rw-r--r-- 1 boincer umatlas     21863 Jul 27 13:06 stderr.txt
[2025-07-27 13:06:45] HITS file was successfully produced:
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas 203157933 Jul 27 13:05 shared/HITS.pool.root.1
[2025-07-27 13:06:45]  *** Contents of shared directory: ***
[2025-07-27 13:06:45] total 342444
[2025-07-27 13:06:45] -rw-r--r-- 2 boincer umatlas 146097038 Jul 27 11:47 ATLAS.root_0
[2025-07-27 13:06:45] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:47 start_atlas.sh
[2025-07-27 13:06:45] -rw-r--r-- 2 boincer umatlas    542895 Jul 27 11:47 input.tar.gz
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas 203157933 Jul 27 13:05 HITS.pool.root.1
[2025-07-27 13:06:45] -rw------- 1 boincer umatlas    829440 Jul 27 13:06 result.tar.gz
13:06:46 (7101): run_atlas exited; CPU time 51117.995764
13:06:46 (7101): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN