Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:37:00 (3341155): wrapper (7.7.26015): starting
23:37:00 (3341155): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 23:37:00] Arguments: --nthreads 12
[2025-07-27 23:37:00] Threads: 12
[2025-07-27 23:37:00] Checking for CVMFS
[2025-07-27 23:37:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:37:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:37:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:37:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:37:00] 2.13.1.0 95439 9223 103044 148825 1 57 2665101 4097024 0 130560 0 7649634 99.990 344801 6406 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-07-27 23:37:00] CVMFS is ok
[2025-07-27 23:37:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:37:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:37:00] Further information can be found at the LHC@home message board.
[2025-07-27 23:37:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:37:00] Checking for apptainer binary...
[2025-07-27 23:37:00] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-07-27 23:37:00] apptainer is not installed, using version from CVMFS
[2025-07-27 23:37:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:37:00] pckelar5.cern.ch
[2025-07-27 23:37:00] apptainer works
[2025-07-27 23:37:00] Set ATHENA_PROC_NUMBER=12
[2025-07-27 23:37:00] Set ATHENA_CORE_NUMBER=12
[2025-07-27 23:37:00] Starting ATLAS job with PandaID=6747412008
[2025-07-27 23:37:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 00:52:37]  *** The last 200 lines of the pilot log: ***
[2025-07-28 00:52:37]  protocol_id=None
[2025-07-28 00:52:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 00:52:37]  replicas=None
[2025-07-28 00:52:37]  scope=mc23_13p6TeV
[2025-07-28 00:52:37]  status=None
[2025-07-28 00:52:37]  status_code=0
[2025-07-28 00:52:37]  storage_token=
[2025-07-28 00:52:37]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6747412008/log.45743349._049141.job.log.tgz.1
[2025-07-28 00:52:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/98/log.45743349._049141.job.log.tgz.1
[2025-07-28 00:52:37]  workdir=None
[2025-07-28 00:52:37] ]
[2025-07-28 00:52:37] 2025-07-27 22:51:57,461 | INFO     | transferring file log.45743349._049141.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6747412008/log.45743349._049141.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 00:52:37] 2025-07-27 22:51:57,462 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6747412008/log.45743349._049141.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._049141.job
[2025-07-28 00:52:37] 2025-07-27 22:51:57,475 | INFO     | adding to output.list: log.45743349._049141.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/98/log.45743349._049141.job.log.tg
[2025-07-28 00:52:37] 2025-07-27 22:51:57,476 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 00:52:37] 2025-07-27 22:51:57,476 | INFO     | summary of transferred files:
[2025-07-28 00:52:37] 2025-07-27 22:51:57,476 | INFO     |  -- lfn=log.45743349._049141.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 00:52:37] 2025-07-27 22:51:57,476 | INFO     | stage-out finished correctly
[2025-07-28 00:52:37] 2025-07-27 22:51:59,123 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 00:52:37] 2025-07-27 22:51:59,704 | INFO     | monitor loop #338: job 0:6747412008 is in state 'finished'
[2025-07-28 00:52:37] 2025-07-27 22:51:59,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:52:37] 2025-07-27 22:52:00,775 | INFO     | job 6747412008 has state=finished
[2025-07-28 00:52:37] 2025-07-27 22:52:00,775 | INFO     | preparing for final server update for job 6747412008 in state='finished'
[2025-07-28 00:52:37] 2025-07-27 22:52:00,776 | INFO     | this job has now completed (state=finished)
[2025-07-28 00:52:37] 2025-07-27 22:52:00,776 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 00:52:37] 2025-07-27 22:52:00,776 | INFO     | log transfer has been attempted: DONE
[2025-07-28 00:52:37] 2025-07-27 22:52:00,776 | INFO     | job 6747412008 has finished - writing final server update
[2025-07-28 00:52:37] 2025-07-27 22:52:00,776 | INFO     | total number of processed events: 400 (read)
[2025-07-28 00:52:37] 2025-07-27 22:52:00,778 | INFO     | executing command: lscpu
[2025-07-28 00:52:37] 2025-07-27 22:52:00,795 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 00:52:37] 2025-07-27 22:52:02,207 | INFO     | monitor loop #339: job 0:6747412008 is in state 'finished'
[2025-07-28 00:52:37] 2025-07-27 22:52:02,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:52:37] 2025-07-27 22:52:04,470 | INFO     | 4498s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 00:52:37] 2025-07-27 22:52:04,710 | INFO     | monitor loop #340: job 0:6747412008 is in state 'finished'
[2025-07-28 00:52:37] 2025-07-27 22:52:04,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 00:52:37] 2025-07-27 22:52:04,937 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 00:52:37] 2025-07-27 22:52:04,939 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2271.79825
[2025-07-28 00:52:37] 2025-07-27 22:52:04,940 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747412008/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 00:52:37] 2025-07-27 22:52:04,941 | INFO     | extracted standard info from prmon json
[2025-07-28 00:52:37] 2025-07-27 22:52:04,941 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 00:52:37] 2025-07-27 22:52:04,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 00:52:37] 2025-07-27 22:52:04,942 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 00:52:37] 2025-07-27 22:52:04,942 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 00:52:37] 2025-07-27 22:52:04,943 | INFO     | fitting pss+swap vs Time
[2025-07-28 00:52:37] 2025-07-27 22:52:04,943 | INFO     | sum of square deviations: 93240818.0
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | sum of deviations: -10702953921.0
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | mean x: 1753654568.0
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | mean y: 2876345.6268656715
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | -- intersect: 201301882910.0605
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | intersect: 201301882910.0605
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | chi2: 0.12810582235148574
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | -- intersect: 201301882910.0605
[2025-07-28 00:52:37] 2025-07-27 22:52:04,944 | INFO     | current memory leak: -114.79 B/s (using 67 data points, chi2=0.13)
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | could have reported an average CPU frequency of 2555 MHz (6 samples)
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | ..............................
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . Timing measurements:
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . get job = 0 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . initial setup = 1 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . payload setup = 5 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . stage-in = 0 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . payload execution = 4466 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . stage-out = 0 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,945 | INFO     | . log creation = 0 s
[2025-07-28 00:52:37] 2025-07-27 22:52:04,946 | INFO     | ..............................
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | 
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | job summary report
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | --------------------------------------------------
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | PanDA job id: 6747412008
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | task id: 45743349
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | errors: (none)
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | pilot state: finished 
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | transexitcode: 0
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | exeerrorcode: 0
[2025-07-28 00:52:37] 2025-07-27 22:52:05,015 | INFO     | exeerrordiag: 
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | exitcode: 0
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | exitmsg: OK
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | cpuconsumptiontime: 48105 s
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | nevents: 400
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | neventsw: 0
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | pid: 3351958
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | pgrp: 3351958
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | corecount: 12
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | event service: False
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | sizes: {0: 2397310, 1: 2397452, 4: 2397714, 11: 2397742, 4475: 2423955, 4476: 2433136, 4478: 2433136, 4484: 2433330}
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | --------------------------------------------------
[2025-07-28 00:52:37] 2025-07-27 22:52:05,016 | INFO     | 
[2025-07-28 00:52:37] 2025-07-27 22:52:05,017 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 00:52:37] 2025-07-27 22:52:05,035 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | job 6747412008 has completed (purged errors)
[2025-07-28 00:52:37] 2025-07-27 22:52:05,037 | INFO     | overall cleanup function is called
[2025-07-28 00:52:37] 2025-07-27 22:52:06,044 | INFO     | --- collectZombieJob: --- 10, [3351958]
[2025-07-28 00:52:37] 2025-07-27 22:52:06,044 | INFO     | zombie collector waiting for pid 3351958
[2025-07-28 00:52:37] 2025-07-27 22:52:06,044 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 00:52:37] 2025-07-27 22:52:06,044 | INFO     | collected zombie processes
[2025-07-28 00:52:37] 2025-07-27 22:52:06,044 | INFO     | will attempt to kill all subprocesses of pid=3351958
[2025-07-28 00:52:37] 2025-07-27 22:52:06,120 | INFO     | process IDs to be killed: [3351958] (in reverse order)
[2025-07-28 00:52:37] 2025-07-27 22:52:06,155 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 00:52:37] 2025-07-27 22:52:06,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 00:52:37] 2025-07-27 22:52:06,157 | INFO     | did not find any defunct processes belonging to 3351958
[2025-07-28 00:52:37] 2025-07-27 22:52:06,159 | INFO     | did not find any defunct processes belonging to 3351958
[2025-07-28 00:52:37] 2025-07-27 22:52:06,160 | INFO     | ready for new job
[2025-07-28 00:52:37] 2025-07-27 22:52:06,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 00:52:37] 2025-07-27 22:52:06,161 | INFO     | ***************************************
[2025-07-28 00:52:37] 2025-07-27 22:52:06,161 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 00:52:37] 2025-07-27 22:52:06,161 | INFO     | ***************************************
[2025-07-28 00:52:37] 2025-07-27 22:52:06,161 | INFO     | 
[2025-07-28 00:52:37] 2025-07-27 22:52:06,162 | INFO     | architecture information:
[2025-07-28 00:52:37] 2025-07-27 22:52:06,162 | INFO     | executing command: cat /etc/os-release
[2025-07-28 00:52:37] 2025-07-27 22:52:06,171 | INFO     | cat /etc/os-release:
[2025-07-28 00:52:37] NAME="CentOS Linux"
[2025-07-28 00:52:37] VERSION="7 (Core)"
[2025-07-28 00:52:37] ID="centos"
[2025-07-28 00:52:37] ID_LIKE="rhel fedora"
[2025-07-28 00:52:37] VERSION_ID="7"
[2025-07-28 00:52:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 00:52:37] ANSI_COLOR="0;31"
[2025-07-28 00:52:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 00:52:37] HOME_URL="https://www.centos.org/"
[2025-07-28 00:52:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 00:52:37] 
[2025-07-28 00:52:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 00:52:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 00:52:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 00:52:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 00:52:37] 
[2025-07-28 00:52:37] 2025-07-27 22:52:06,171 | INFO     | ***************************************
[2025-07-28 00:52:37] 2025-07-27 22:52:06,674 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 00:52:37] 2025-07-27 22:52:06,687 | INFO     | sufficient remaining disk space (1817460080640 B)
[2025-07-28 00:52:37] 2025-07-27 22:52:06,687 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 00:52:37] 2025-07-27 22:52:06,687 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 00:52:37] 2025-07-27 22:52:06,687 | INFO     | update_server=False
[2025-07-28 00:52:37] 2025-07-27 22:52:06,687 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 00:52:37] 2025-07-27 22:52:06,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:52:37] 2025-07-27 22:52:06,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 00:52:37] 2025-07-27 22:52:06,688 | INFO     | aborting loop
[2025-07-28 00:52:37] 2025-07-27 22:52:07,059 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-07-28 00:52:37] 2025-07-27 22:52:07,693 | INFO     | [job] retrieve thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:07,693 | INFO     | [job] queue monitor thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:07,693 | INFO     | [job] job monitor thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:07,723 | INFO     | all data control threads have been joined
[2025-07-28 00:52:37] 2025-07-27 22:52:07,873 | INFO     | all payload control threads have been joined
[2025-07-28 00:52:37] 2025-07-27 22:52:07,888 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:07,935 | INFO     | all job control threads have been joined
[2025-07-28 00:52:37] 2025-07-27 22:52:08,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 00:52:37] 2025-07-27 22:52:08,093 | INFO     | [payload] failed_post thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,131 | INFO     | [job] validate thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,257 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,426 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,474 | INFO     | [data] copytool_in thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,729 | INFO     | [data] control thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,878 | INFO     | [payload] control thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:08,940 | INFO     | [job] control thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:09,130 | INFO     | [payload] validate_post thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:09,694 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 00:52:37] 2025-07-27 22:52:10,063 | INFO     | [data] copytool_out thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:13,700 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:17,203 | INFO     | job.realtimelogging is not enabled
[2025-07-28 00:52:37] 2025-07-27 22:52:18,208 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 00:52:37] 2025-07-27 22:52:19,020 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678357780288)>', '<ExcThread(monitor, started 139677671601920)>']
[2025-07-28 00:52:37] 2025-07-27 22:52:24,046 | INFO     | all workflow threads have been joined
[2025-07-28 00:52:37] 2025-07-27 22:52:24,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 00:52:37] 2025-07-27 22:52:24,046 | INFO     | traces error code: 0
[2025-07-28 00:52:37] 2025-07-27 22:52:24,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 00:52:37] 2025-07-27 22:52:37,650 | INFO     | PID=3344852 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 00:52:37] 2025-07-27 22:52:37,650 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 00:52:37] 2025-07-27 22:52:37,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 00:52:37] 2025-07-27 22:52:37,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 00:52:37] 2025-07-27 22:52:37,650 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 00:52:37] 2025-07-27 22:52:37,651 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 00:52:37] 2025-07-27 22:52:37,651 | INFO     | [monitor] control thread has ended
[2025-07-28 00:52:37] 2025-07-27 22:52:37,733 [wrapper] ==== pilot stdout END ====
[2025-07-28 00:52:37] 2025-07-27 22:52:37,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 00:52:37] 2025-07-27 22:52:37,738 [wrapper] pilotpid: 3344852
[2025-07-28 00:52:37] 2025-07-27 22:52:37,741 [wrapper] Pilot exit status: 0
[2025-07-28 00:52:37] 2025-07-27 22:52:37,749 [wrapper] pandaids: 6747412008
[2025-07-28 00:52:37] 2025-07-27 22:52:37,769 [wrapper] cleanup supervisor_pilot 3371083 3344853
[2025-07-28 00:52:37] 2025-07-27 22:52:37,771 [wrapper] Test setup, not cleaning
[2025-07-28 00:52:37] 2025-07-27 22:52:37,773 [wrapper] apfmon messages muted
[2025-07-28 00:52:37] 2025-07-27 22:52:37,775 [wrapper] ==== wrapper stdout END ====
[2025-07-28 00:52:37] 2025-07-27 22:52:37,776 [wrapper] ==== wrapper stderr END ====
[2025-07-28 00:52:37]  *** Error codes and diagnostics ***
[2025-07-28 00:52:37]     "exeErrorCode": 0,
[2025-07-28 00:52:37]     "exeErrorDiag": "",
[2025-07-28 00:52:37]     "pilotErrorCode": 0,
[2025-07-28 00:52:37]     "pilotErrorDiag": "",
[2025-07-28 00:52:37]  *** Listing of results directory ***
[2025-07-28 00:52:37] total 426980
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc    530466 Jul 27 15:04 pilot3.tar.gz
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc      5112 Jul 27 15:25 queuedata.json
[2025-07-28 00:52:37] -rwx------ 1 boinc boinc     36292 Jul 27 15:26 runpilot2-wrapper.sh
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc       100 Jul 27 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 00:52:37] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 23:36 run_atlas
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc       105 Jul 27 23:36 job.xml
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc      6294 Jul 27 23:37 init_data.xml
[2025-07-28 00:52:37] -rw-r--r-- 2 boinc boinc 227650072 Jul 27 23:37 EVNT.45743347._002716.pool.root.1
[2025-07-28 00:52:37] -rw-r--r-- 2 boinc boinc     15095 Jul 27 23:37 start_atlas.sh
[2025-07-28 00:52:37] drwxrwx--x 2 boinc boinc        68 Jul 27 23:37 shared
[2025-07-28 00:52:37] -rw-r--r-- 2 boinc boinc    542898 Jul 27 23:37 input.tar.gz
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc         0 Jul 27 23:37 boinc_lockfile
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc      2562 Jul 27 23:37 pandaJob.out
[2025-07-28 00:52:37] -rw------- 1 boinc boinc    980117 Jul 27 23:37 agis_schedconf.cvmfs.json
[2025-07-28 00:52:37] -rw------- 1 boinc boinc   1593052 Jul 27 23:37 agis_ddmendpoints.agis.ALL.json
[2025-07-28 00:52:37] drwx------ 4 boinc boinc      4096 Jul 27 23:37 pilot3
[2025-07-28 00:52:37] -rw------- 1 boinc boinc 204096606 Jul 28 00:51 HITS.45743349._049141.pool.root.1
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc       529 Jul 28 00:51 boinc_task_state.xml
[2025-07-28 00:52:37] -rw------- 1 boinc boinc      1016 Jul 28 00:51 memory_monitor_summary.json
[2025-07-28 00:52:37] -rw------- 1 boinc boinc    371184 Jul 28 00:51 log.45743349._049141.job.log.tgz.1
[2025-07-28 00:52:37] -rw------- 1 boinc boinc        95 Jul 28 00:52 pilot_heartbeat.json
[2025-07-28 00:52:37] -rw------- 1 boinc boinc      7791 Jul 28 00:52 heartbeat.json
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc      8192 Jul 28 00:52 boinc_mmap_file
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc        27 Jul 28 00:52 wrapper_checkpoint.txt
[2025-07-28 00:52:37] -rw------- 1 boinc boinc       817 Jul 28 00:52 pilotlog.txt
[2025-07-28 00:52:37] -rw------- 1 boinc boinc    436984 Jul 28 00:52 log.45743349._049141.job.log.1
[2025-07-28 00:52:37] -rw------- 1 boinc boinc       357 Jul 28 00:52 output.list
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc       620 Jul 28 00:52 runtime_log
[2025-07-28 00:52:37] -rw------- 1 boinc boinc    829440 Jul 28 00:52 result.tar.gz
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc      8684 Jul 28 00:52 runtime_log.err
[2025-07-28 00:52:37] -rw------- 1 boinc boinc       655 Jul 28 00:52 giiMDmOZG07n9Rq4apOajLDm4fhM0noT9bVof3QYDmHb2KDm44Ctsn.diag
[2025-07-28 00:52:37] -rw-r--r-- 1 boinc boinc     21888 Jul 28 00:52 stderr.txt
[2025-07-28 00:52:37] HITS file was successfully produced:
[2025-07-28 00:52:37] -rw------- 1 boinc boinc 204096606 Jul 28 00:51 shared/HITS.pool.root.1
[2025-07-28 00:52:37]  *** Contents of shared directory: ***
[2025-07-28 00:52:37] total 422992
[2025-07-28 00:52:37] -rw-r--r-- 2 boinc boinc 227650072 Jul 27 23:37 ATLAS.root_0
[2025-07-28 00:52:37] -rw-r--r-- 2 boinc boinc     15095 Jul 27 23:37 start_atlas.sh
[2025-07-28 00:52:37] -rw-r--r-- 2 boinc boinc    542898 Jul 27 23:37 input.tar.gz
[2025-07-28 00:52:37] -rw------- 1 boinc boinc 204096606 Jul 28 00:51 HITS.pool.root.1
[2025-07-28 00:52:37] -rw------- 1 boinc boinc    829440 Jul 28 00:52 result.tar.gz
00:52:39 (3341155): run_atlas exited; CPU time 48135.717214
00:52:39 (3341155): called boinc_finish(0)

</stderr_txt>
]]>

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