Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:36:43 (9322): wrapper (7.7.26015): starting
11:36:43 (9322): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:36:43] Arguments: --nthreads 12
[2025-07-27 11:36:43] Threads: 12
[2025-07-27 11:36:43] Checking for CVMFS
[2025-07-27 11:36:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:36:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:36:44] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:36:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:36:44] 2.11.2.0 2918 112190 94104 148817 2 57 14681288 20275201 1 130560 0 39083055 99.972 9651418 10598 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 11:36:44] CVMFS is ok
[2025-07-27 11:36:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:36:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:36:44] Further information can be found at the LHC@home message board.
[2025-07-27 11:36:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:36:44] Checking for apptainer binary...
[2025-07-27 11:36:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:36:44] Running /usr/bin/apptainer --version
[2025-07-27 11:36:44] apptainer version 1.3.2-1.el7
[2025-07-27 11:36:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:36:45] c-205-12.aglt2.org
[2025-07-27 11:36:45] apptainer works
[2025-07-27 11:36:45] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:36:45] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:36:45] Starting ATLAS job with PandaID=6746436362
[2025-07-27 11:36:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:00:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:00:12]  protocol_id=None
[2025-07-27 13:00:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 13:00:12]  replicas=None
[2025-07-27 13:00:12]  scope=mc23_13p6TeV
[2025-07-27 13:00:12]  status=None
[2025-07-27 13:00:12]  status_code=0
[2025-07-27 13:00:12]  storage_token=
[2025-07-27 13:00:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746436362/log.45743349._046190.job.log.tgz.1
[2025-07-27 13:00:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/32/log.45743349._046190.job.log.tgz.1
[2025-07-27 13:00:12]  workdir=None
[2025-07-27 13:00:12] ]
[2025-07-27 13:00:12] 2025-07-27 16:59:31,637 | INFO     | transferring file log.45743349._046190.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746436362/log.45743349._046190.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:00:12] 2025-07-27 16:59:31,638 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746436362/log.45743349._046190.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._046190.job
[2025-07-27 13:00:12] 2025-07-27 16:59:31,660 | INFO     | adding to output.list: log.45743349._046190.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/32/log.45743349._046190.job.log.tg
[2025-07-27 13:00:12] 2025-07-27 16:59:31,661 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:00:12] 2025-07-27 16:59:31,661 | INFO     | summary of transferred files:
[2025-07-27 13:00:12] 2025-07-27 16:59:31,661 | INFO     |  -- lfn=log.45743349._046190.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:00:12] 2025-07-27 16:59:31,662 | INFO     | stage-out finished correctly
[2025-07-27 13:00:12] 2025-07-27 16:59:32,838 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:00:12] 2025-07-27 16:59:34,471 | WARNING  | process 19421 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 13:00:12] 2025-07-27 16:59:34,471 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746436362/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:00:12] 2025-07-27 16:59:34,558 | INFO     | number of running child processes to parent process 19421: 1
[2025-07-27 13:00:12] 2025-07-27 16:59:34,558 | INFO     | maximum number of monitored processes: 6
[2025-07-27 13:00:12] 2025-07-27 16:59:34,788 | INFO     | job 6746436362 has state=finished
[2025-07-27 13:00:12] 2025-07-27 16:59:34,788 | INFO     | preparing for final server update for job 6746436362 in state='finished'
[2025-07-27 13:00:12] 2025-07-27 16:59:34,788 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:00:12] 2025-07-27 16:59:34,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:00:12] 2025-07-27 16:59:34,789 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:00:12] 2025-07-27 16:59:34,789 | INFO     | job 6746436362 has finished - writing final server update
[2025-07-27 13:00:12] 2025-07-27 16:59:34,789 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:00:12] 2025-07-27 16:59:34,790 | INFO     | executing command: lscpu
[2025-07-27 13:00:12] 2025-07-27 16:59:34,818 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:00:12] 2025-07-27 16:59:37,059 | INFO     | monitor loop #370: job 0:6746436362 is in state 'finished'
[2025-07-27 13:00:12] 2025-07-27 16:59:37,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:00:12] 2025-07-27 16:59:39,562 | INFO     | monitor loop #371: job 0:6746436362 is in state 'finished'
[2025-07-27 13:00:12] 2025-07-27 16:59:39,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:00:12] 2025-07-27 16:59:39,792 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 13:00:12] 2025-07-27 16:59:39,796 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-27 13:00:12] 2025-07-27 16:59:39,798 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746436362/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:00:12] 2025-07-27 16:59:39,799 | INFO     | extracted standard info from prmon json
[2025-07-27 13:00:12] 2025-07-27 16:59:39,799 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:00:12] 2025-07-27 16:59:39,799 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:00:12] 2025-07-27 16:59:39,799 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:00:12] 2025-07-27 16:59:39,799 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:00:12] 2025-07-27 16:59:39,801 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:00:12] 2025-07-27 16:59:39,802 | INFO     | sum of square deviations: 125630262.5
[2025-07-27 13:00:12] 2025-07-27 16:59:39,802 | INFO     | sum of deviations: -10588957547.999998
[2025-07-27 13:00:12] 2025-07-27 16:59:39,802 | INFO     | mean x: 1753633180.5
[2025-07-27 13:00:12] 2025-07-27 16:59:39,802 | INFO     | mean y: 2811695.5945945946
[2025-07-27 13:00:12] 2025-07-27 16:59:39,802 | INFO     | -- intersect: 147810727826.30173
[2025-07-27 13:00:12] 2025-07-27 16:59:39,803 | INFO     | intersect: 147810727826.30173
[2025-07-27 13:00:12] 2025-07-27 16:59:39,803 | INFO     | chi2: 0.0598708434977425
[2025-07-27 13:00:12] 2025-07-27 16:59:39,803 | INFO     | -- intersect: 147810727826.30173
[2025-07-27 13:00:12] 2025-07-27 16:59:39,803 | INFO     | current memory leak: -84.29 B/s (using 74 data points, chi2=0.06)
[2025-07-27 13:00:12] 2025-07-27 16:59:39,803 | INFO     | could have reported an average CPU frequency of 2058 MHz (6 samples)
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | ..............................
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | . Timing measurements:
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | . get job = 0 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | . initial setup = 2 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | . payload setup = 9 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | . stage-in = 0 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,804 | INFO     | . payload execution = 4921 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,805 | INFO     | . stage-out = 0 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,805 | INFO     | . log creation = 0 s
[2025-07-27 13:00:12] 2025-07-27 16:59:39,805 | INFO     | ..............................
[2025-07-27 13:00:12] 2025-07-27 16:59:40,167 | INFO     | 
[2025-07-27 13:00:12] 2025-07-27 16:59:40,167 | INFO     | job summary report
[2025-07-27 13:00:12] 2025-07-27 16:59:40,167 | INFO     | --------------------------------------------------
[2025-07-27 13:00:12] 2025-07-27 16:59:40,168 | INFO     | PanDA job id: 6746436362
[2025-07-27 13:00:12] 2025-07-27 16:59:40,168 | INFO     | task id: 45743349
[2025-07-27 13:00:12] 2025-07-27 16:59:40,168 | INFO     | errors: (none)
[2025-07-27 13:00:12] 2025-07-27 16:59:40,168 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:00:12] 2025-07-27 16:59:40,168 | INFO     | pilot state: finished 
[2025-07-27 13:00:12] 2025-07-27 16:59:40,168 | INFO     | transexitcode: 0
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | exeerrorcode: 0
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | exeerrordiag: 
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | exitcode: 0
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | exitmsg: OK
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | cpuconsumptiontime: 53739 s
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | nevents: 400
[2025-07-27 13:00:12] 2025-07-27 16:59:40,169 | INFO     | neventsw: 0
[2025-07-27 13:00:12] 2025-07-27 16:59:40,170 | INFO     | pid: 19421
[2025-07-27 13:00:12] 2025-07-27 16:59:40,170 | INFO     | pgrp: 19421
[2025-07-27 13:00:12] 2025-07-27 16:59:40,170 | INFO     | corecount: 12
[2025-07-27 13:00:12] 2025-07-27 16:59:40,170 | INFO     | event service: False
[2025-07-27 13:00:12] 2025-07-27 16:59:40,170 | INFO     | sizes: {0: 2397250, 1: 2397449, 5: 2397711, 11: 2397767, 4935: 2424043, 4937: 2433041, 4938: 2433225, 4945: 2433419}
[2025-07-27 13:00:12] 2025-07-27 16:59:40,170 | INFO     | --------------------------------------------------
[2025-07-27 13:00:12] 2025-07-27 16:59:40,171 | INFO     | 
[2025-07-27 13:00:12] 2025-07-27 16:59:40,171 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:00:12] 2025-07-27 16:59:40,208 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,208 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,208 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,208 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,209 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,210 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,210 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,210 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,210 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,210 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,210 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:00:12] 2025-07-27 16:59:40,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:00:12] 2025-07-27 16:59:40,211 | INFO     | job 6746436362 has completed (purged errors)
[2025-07-27 13:00:12] 2025-07-27 16:59:40,211 | INFO     | overall cleanup function is called
[2025-07-27 13:00:12] 2025-07-27 16:59:41,219 | INFO     | --- collectZombieJob: --- 10, [19421]
[2025-07-27 13:00:12] 2025-07-27 16:59:41,219 | INFO     | zombie collector waiting for pid 19421
[2025-07-27 13:00:12] 2025-07-27 16:59:41,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:00:12] 2025-07-27 16:59:41,220 | INFO     | collected zombie processes
[2025-07-27 13:00:12] 2025-07-27 16:59:41,220 | INFO     | will attempt to kill all subprocesses of pid=19421
[2025-07-27 13:00:12] 2025-07-27 16:59:41,310 | INFO     | process IDs to be killed: [19421] (in reverse order)
[2025-07-27 13:00:12] 2025-07-27 16:59:41,359 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:00:12] 2025-07-27 16:59:41,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:00:12] 2025-07-27 16:59:41,364 | INFO     | did not find any defunct processes belonging to 19421
[2025-07-27 13:00:12] 2025-07-27 16:59:41,367 | INFO     | did not find any defunct processes belonging to 19421
[2025-07-27 13:00:12] 2025-07-27 16:59:41,367 | INFO     | ready for new job
[2025-07-27 13:00:12] 2025-07-27 16:59:41,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:00:12] 2025-07-27 16:59:41,368 | INFO     | ***************************************
[2025-07-27 13:00:12] 2025-07-27 16:59:41,368 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:00:12] 2025-07-27 16:59:41,369 | INFO     | ***************************************
[2025-07-27 13:00:12] 2025-07-27 16:59:41,369 | INFO     | 
[2025-07-27 13:00:12] 2025-07-27 16:59:41,369 | INFO     | architecture information:
[2025-07-27 13:00:12] 2025-07-27 16:59:41,370 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:00:12] 2025-07-27 16:59:41,387 | INFO     | cat /etc/os-release:
[2025-07-27 13:00:12] NAME="CentOS Linux"
[2025-07-27 13:00:12] VERSION="7 (Core)"
[2025-07-27 13:00:12] ID="centos"
[2025-07-27 13:00:12] ID_LIKE="rhel fedora"
[2025-07-27 13:00:12] VERSION_ID="7"
[2025-07-27 13:00:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:00:12] ANSI_COLOR="0;31"
[2025-07-27 13:00:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:00:12] HOME_URL="https://www.centos.org/"
[2025-07-27 13:00:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:00:12] 
[2025-07-27 13:00:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:00:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:00:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:00:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:00:12] 
[2025-07-27 13:00:12] 2025-07-27 16:59:41,387 | INFO     | ***************************************
[2025-07-27 13:00:12] 2025-07-27 16:59:41,888 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:00:12] 2025-07-27 16:59:41,906 | INFO     | sufficient remaining disk space (29344399360 B)
[2025-07-27 13:00:12] 2025-07-27 16:59:41,906 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:00:12] 2025-07-27 16:59:41,906 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:00:12] 2025-07-27 16:59:41,906 | INFO     | update_server=False
[2025-07-27 13:00:12] 2025-07-27 16:59:41,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:00:12] 2025-07-27 16:59:42,064 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 13:00:12] 2025-07-27 16:59:42,065 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 13:00:12] 2025-07-27 16:59:42,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:00:12] 2025-07-27 16:59:42,065 | INFO     | will abort loop
[2025-07-27 13:00:12] 2025-07-27 16:59:42,262 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:00:12] 2025-07-27 16:59:42,498 | INFO     | all job control threads have been joined
[2025-07-27 13:00:12] 2025-07-27 16:59:42,912 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:42,937 | INFO     | all data control threads have been joined
[2025-07-27 13:00:12] 2025-07-27 16:59:43,070 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:43,179 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:43,392 | INFO     | all payload control threads have been joined
[2025-07-27 13:00:12] 2025-07-27 16:59:43,407 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:43,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:00:12] 2025-07-27 16:59:43,504 | INFO     | [job] control thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:43,615 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:43,636 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:43,943 | INFO     | [data] control thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,248 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,267 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,313 | INFO     | [job] validate thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,354 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,398 | INFO     | [payload] control thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,412 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:44,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:00:12] 2025-07-27 16:59:45,905 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:47,437 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:00:12] 2025-07-27 16:59:48,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140079927306048)>', '<ExcThread(monitor, started 140079700170496)>']
[2025-07-27 13:00:12] 2025-07-27 16:59:53,557 | INFO     | all workflow threads have been joined
[2025-07-27 13:00:12] 2025-07-27 16:59:53,558 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:00:12] 2025-07-27 16:59:53,558 | INFO     | traces error code: 0
[2025-07-27 13:00:12] 2025-07-27 16:59:53,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:00:12] 2025-07-27 17:00:12,076 | INFO     | PID=12942 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 13:00:12] 2025-07-27 17:00:12,076 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:00:12] 2025-07-27 17:00:12,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:00:12] 2025-07-27 17:00:12,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:00:12] 2025-07-27 17:00:12,077 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:00:12] 2025-07-27 17:00:12,077 | INFO     | [monitor] control thread has ended
[2025-07-27 13:00:12] 2025-07-27 17:00:12,166 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:00:12] 2025-07-27 17:00:12,170 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:00:12] 2025-07-27 17:00:12,174 [wrapper] pilotpid: 12942
[2025-07-27 13:00:12] 2025-07-27 17:00:12,178 [wrapper] Pilot exit status: 0
[2025-07-27 13:00:12] 2025-07-27 17:00:12,194 [wrapper] pandaids: 6746436362
[2025-07-27 13:00:12] 2025-07-27 17:00:12,237 [wrapper] cleanup supervisor_pilot 25933 12943
[2025-07-27 13:00:12] 2025-07-27 17:00:12,241 [wrapper] Test setup, not cleaning
[2025-07-27 13:00:12] 2025-07-27 17:00:12,245 [wrapper] apfmon messages muted
[2025-07-27 13:00:12] 2025-07-27 17:00:12,249 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:00:12] 2025-07-27 17:00:12,253 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:00:12]  *** Error codes and diagnostics ***
[2025-07-27 13:00:12]     "exeErrorCode": 0,
[2025-07-27 13:00:12]     "exeErrorDiag": "",
[2025-07-27 13:00:12]     "pilotErrorCode": 0,
[2025-07-27 13:00:12]     "pilotErrorDiag": "",
[2025-07-27 13:00:12]  *** Listing of results directory ***
[2025-07-27 13:00:12] total 436316
[2025-07-27 13:00:12] -rwx------ 1 boincer umatlas     36292 Jul 27 03:44 runpilot2-wrapper.sh
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 03:44 queuedata.json
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 03:44 pilot3.tar.gz
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas       100 Jul 27 11:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:00:12] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 11:36 run_atlas
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas       105 Jul 27 11:36 job.xml
[2025-07-27 13:00:12] -rw-r--r-- 2 boincer umatlas 232092764 Jul 27 11:36 EVNT.45743347._001267.pool.root.1
[2025-07-27 13:00:12] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:36 start_atlas.sh
[2025-07-27 13:00:12] drwxrwx--x 2 boincer umatlas      4096 Jul 27 11:36 shared
[2025-07-27 13:00:12] -rw-r--r-- 2 boincer umatlas    542896 Jul 27 11:36 input.tar.gz
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas         0 Jul 27 11:36 boinc_lockfile
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas      2561 Jul 27 11:36 pandaJob.out
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas    980101 Jul 27 11:36 agis_schedconf.cvmfs.json
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas   1593052 Jul 27 11:36 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:00:12] drwx------ 4 boincer umatlas      4096 Jul 27 11:36 pilot3
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 12:57 init_data.xml
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas 209158670 Jul 27 12:58 HITS.45743349._046190.pool.root.1
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas       530 Jul 27 12:59 boinc_task_state.xml
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas      1047 Jul 27 12:59 memory_monitor_summary.json
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas    353967 Jul 27 12:59 log.45743349._046190.job.log.tgz.1
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas      7853 Jul 27 12:59 heartbeat.json
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 12:59 boinc_mmap_file
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas        27 Jul 27 12:59 wrapper_checkpoint.txt
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas        95 Jul 27 13:00 pilot_heartbeat.json
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas       745 Jul 27 13:00 pilotlog.txt
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas    471998 Jul 27 13:00 log.45743349._046190.job.log.1
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas       357 Jul 27 13:00 output.list
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas       620 Jul 27 13:00 runtime_log
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas    849920 Jul 27 13:00 result.tar.gz
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas       659 Jul 27 13:00 tE2NDmpEB07n9Rq4apOajLDm4fhM0noT9bVof3QYDmbB2KDmezk9an.diag
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 13:00 runtime_log.err
[2025-07-27 13:00:12] -rw-r--r-- 1 boincer umatlas     21843 Jul 27 13:00 stderr.txt
[2025-07-27 13:00:12] HITS file was successfully produced:
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas 209158670 Jul 27 12:58 shared/HITS.pool.root.1
[2025-07-27 13:00:12]  *** Contents of shared directory: ***
[2025-07-27 13:00:12] total 432300
[2025-07-27 13:00:12] -rw-r--r-- 2 boincer umatlas 232092764 Jul 27 11:36 ATLAS.root_0
[2025-07-27 13:00:12] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:36 start_atlas.sh
[2025-07-27 13:00:12] -rw-r--r-- 2 boincer umatlas    542896 Jul 27 11:36 input.tar.gz
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas 209158670 Jul 27 12:58 HITS.pool.root.1
[2025-07-27 13:00:12] -rw------- 1 boincer umatlas    849920 Jul 27 13:00 result.tar.gz
13:00:13 (9322): run_atlas exited; CPU time 53719.298185
13:00:13 (9322): called boinc_finish(0)

</stderr_txt>
]]>

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