Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:33:19 (10063): wrapper (7.7.26015): starting
11:33:19 (10063): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 11:33:19] Arguments: --nthreads 8
[2025-07-27 11:33:19] Threads: 8
[2025-07-27 11:33:19] Checking for CVMFS
[2025-07-27 11:33:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:33:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:33:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:33:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:33:20] 2.11.2.0 1598 105508 117996 148817 3 57 20167158 20275200 917 130560 0 74642541 99.986 8194767 9289 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 11:33:20] CVMFS is ok
[2025-07-27 11:33:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:33:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:33:20] Further information can be found at the LHC@home message board.
[2025-07-27 11:33:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:33:20] Checking for apptainer binary...
[2025-07-27 11:33:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:33:20] Running /usr/bin/apptainer --version
[2025-07-27 11:33:20] apptainer version 1.3.2-1.el7
[2025-07-27 11:33:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:33:21] c-205-36.aglt2.org
[2025-07-27 11:33:21] apptainer works
[2025-07-27 11:33:21] Set ATHENA_PROC_NUMBER=8
[2025-07-27 11:33:21] Set ATHENA_CORE_NUMBER=8
[2025-07-27 11:33:21] Starting ATLAS job with PandaID=6743232068
[2025-07-27 11:33:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:03:33]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:03:33]  replicas=None
[2025-07-27 13:03:33]  scope=mc23_13p6TeV
[2025-07-27 13:03:33]  status=None
[2025-07-27 13:03:33]  status_code=0
[2025-07-27 13:03:33]  storage_token=
[2025-07-27 13:03:33]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6743232068/log.45668889._000837.job.log.tgz.1
[2025-07-27 13:03:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/b4/log.45668889._000837.job.log.tgz.1
[2025-07-27 13:03:33]  workdir=None
[2025-07-27 13:03:33] ]
[2025-07-27 13:03:33] 2025-07-27 17:02:50,639 | INFO     | transferring file log.45668889._000837.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6743232068/log.45668889._000837.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:03:33] 2025-07-27 17:02:50,640 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6743232068/log.45668889._000837.job.log.tgz.1 /tmp/boinchome/slots/0/log.45668889._000837.job
[2025-07-27 13:03:33] 2025-07-27 17:02:50,657 | INFO     | adding to output.list: log.45668889._000837.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/b4/log.45668889._000837.job.log.tg
[2025-07-27 13:03:33] 2025-07-27 17:02:50,658 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:03:33] 2025-07-27 17:02:50,658 | INFO     | summary of transferred files:
[2025-07-27 13:03:33] 2025-07-27 17:02:50,658 | INFO     |  -- lfn=log.45668889._000837.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:03:33] 2025-07-27 17:02:50,658 | INFO     | stage-out finished correctly
[2025-07-27 13:03:33] 2025-07-27 17:02:52,642 | INFO     | monitor loop #400: job 0:6743232068 is in state 'finished'
[2025-07-27 13:03:33] 2025-07-27 17:02:52,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:03:33] 2025-07-27 17:02:54,150 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:03:33] 2025-07-27 17:02:55,145 | INFO     | monitor loop #401: job 0:6743232068 is in state 'finished'
[2025-07-27 13:03:33] 2025-07-27 17:02:55,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:03:33] 2025-07-27 17:02:55,254 | INFO     | job 6743232068 has state=finished
[2025-07-27 13:03:33] 2025-07-27 17:02:55,255 | INFO     | preparing for final server update for job 6743232068 in state='finished'
[2025-07-27 13:03:33] 2025-07-27 17:02:55,255 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:03:33] 2025-07-27 17:02:55,255 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:03:33] 2025-07-27 17:02:55,255 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:03:33] 2025-07-27 17:02:55,256 | INFO     | job 6743232068 has finished - writing final server update
[2025-07-27 13:03:33] 2025-07-27 17:02:55,256 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:03:33] 2025-07-27 17:02:55,257 | INFO     | executing command: lscpu
[2025-07-27 13:03:33] 2025-07-27 17:02:55,289 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:03:33] 2025-07-27 17:02:57,648 | INFO     | monitor loop #402: job 0:6743232068 is in state 'finished'
[2025-07-27 13:03:33] 2025-07-27 17:02:57,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:03:33] 2025-07-27 17:03:00,151 | INFO     | monitor loop #403: job 0:6743232068 is in state 'finished'
[2025-07-27 13:03:33] 2025-07-27 17:03:00,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:03:33] 2025-07-27 17:03:00,709 | INFO     | PID=14647 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 13:03:33] 2025-07-27 17:03:00,709 | INFO     | .. there are 2 such processes running
[2025-07-27 13:03:33] 2025-07-27 17:03:00,744 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 13:03:33] 2025-07-27 17:03:00,746 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2147.3872499999998
[2025-07-27 13:03:33] 2025-07-27 17:03:00,748 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6743232068/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:03:33] 2025-07-27 17:03:00,749 | INFO     | extracted standard info from prmon json
[2025-07-27 13:03:33] 2025-07-27 17:03:00,749 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:03:33] 2025-07-27 17:03:00,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:03:33] 2025-07-27 17:03:00,749 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:03:33] 2025-07-27 17:03:00,749 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:03:33] 2025-07-27 17:03:00,750 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:03:33] 2025-07-27 17:03:00,750 | INFO     | sum of square deviations: 164765880.0
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | sum of deviations: -10780879408.000002
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | mean x: 1753633183.0
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | mean y: 2631282.814814815
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | -- intersect: 114745488674.10358
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | intersect: 114745488674.10358
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | chi2: 0.02819032351160224
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | -- intersect: 114745488674.10358
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | current memory leak: -65.43 B/s (using 81 data points, chi2=0.03)
[2025-07-27 13:03:33] 2025-07-27 17:03:00,751 | INFO     | could have reported an average CPU frequency of 2251 MHz (6 samples)
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | ..............................
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . Timing measurements:
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . get job = 0 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . initial setup = 2 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . payload setup = 6 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . stage-in = 0 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . payload execution = 5331 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . stage-out = 0 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | . log creation = 0 s
[2025-07-27 13:03:33] 2025-07-27 17:03:00,752 | INFO     | ..............................
[2025-07-27 13:03:33] 2025-07-27 17:03:01,238 | INFO     | 
[2025-07-27 13:03:33] 2025-07-27 17:03:01,238 | INFO     | job summary report
[2025-07-27 13:03:33] 2025-07-27 17:03:01,238 | INFO     | --------------------------------------------------
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | PanDA job id: 6743232068
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | task id: 45668889
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | errors: (none)
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | pilot state: finished 
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | transexitcode: 0
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | exeerrorcode: 0
[2025-07-27 13:03:33] 2025-07-27 17:03:01,239 | INFO     | exeerrordiag: 
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | exitcode: 0
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | exitmsg: OK
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | cpuconsumptiontime: 40476 s
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | nevents: 400
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | neventsw: 0
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | pid: 21077
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | pgrp: 21077
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | corecount: 8
[2025-07-27 13:03:33] 2025-07-27 17:03:01,240 | INFO     | event service: False
[2025-07-27 13:03:33] 2025-07-27 17:03:01,241 | INFO     | sizes: {0: 2397430, 5: 2397692, 11: 2397748, 5342: 2424354, 5344: 2433352, 5347: 2433408, 5354: 2433730}
[2025-07-27 13:03:33] 2025-07-27 17:03:01,241 | INFO     | --------------------------------------------------
[2025-07-27 13:03:33] 2025-07-27 17:03:01,241 | INFO     | 
[2025-07-27 13:03:33] 2025-07-27 17:03:01,241 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:03:33] 2025-07-27 17:03:01,262 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,262 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,262 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,262 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:03:33] 2025-07-27 17:03:01,265 | INFO     | job 6743232068 has completed (purged errors)
[2025-07-27 13:03:33] 2025-07-27 17:03:01,265 | INFO     | overall cleanup function is called
[2025-07-27 13:03:33] 2025-07-27 17:03:02,273 | INFO     | --- collectZombieJob: --- 10, [21077]
[2025-07-27 13:03:33] 2025-07-27 17:03:02,274 | INFO     | zombie collector waiting for pid 21077
[2025-07-27 13:03:33] 2025-07-27 17:03:02,274 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:03:33] 2025-07-27 17:03:02,274 | INFO     | collected zombie processes
[2025-07-27 13:03:33] 2025-07-27 17:03:02,274 | INFO     | will attempt to kill all subprocesses of pid=21077
[2025-07-27 13:03:33] 2025-07-27 17:03:02,397 | INFO     | process IDs to be killed: [21077] (in reverse order)
[2025-07-27 13:03:33] 2025-07-27 17:03:02,441 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:03:33] 2025-07-27 17:03:02,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:03:33] 2025-07-27 17:03:02,446 | INFO     | did not find any defunct processes belonging to 21077
[2025-07-27 13:03:33] 2025-07-27 17:03:02,449 | INFO     | did not find any defunct processes belonging to 21077
[2025-07-27 13:03:33] 2025-07-27 17:03:02,450 | INFO     | ready for new job
[2025-07-27 13:03:33] 2025-07-27 17:03:02,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:03:33] 2025-07-27 17:03:02,452 | INFO     | ***************************************
[2025-07-27 13:03:33] 2025-07-27 17:03:02,452 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:03:33] 2025-07-27 17:03:02,452 | INFO     | ***************************************
[2025-07-27 13:03:33] 2025-07-27 17:03:02,452 | INFO     | 
[2025-07-27 13:03:33] 2025-07-27 17:03:02,453 | INFO     | architecture information:
[2025-07-27 13:03:33] 2025-07-27 17:03:02,453 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:03:33] 2025-07-27 17:03:02,467 | INFO     | cat /etc/os-release:
[2025-07-27 13:03:33] NAME="CentOS Linux"
[2025-07-27 13:03:33] VERSION="7 (Core)"
[2025-07-27 13:03:33] ID="centos"
[2025-07-27 13:03:33] ID_LIKE="rhel fedora"
[2025-07-27 13:03:33] VERSION_ID="7"
[2025-07-27 13:03:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:03:33] ANSI_COLOR="0;31"
[2025-07-27 13:03:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:03:33] HOME_URL="https://www.centos.org/"
[2025-07-27 13:03:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:03:33] 
[2025-07-27 13:03:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:03:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:03:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:03:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:03:33] 
[2025-07-27 13:03:33] 2025-07-27 17:03:02,468 | INFO     | ***************************************
[2025-07-27 13:03:33] 2025-07-27 17:03:02,971 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:03:33] 2025-07-27 17:03:02,988 | INFO     | sufficient remaining disk space (32489078784 B)
[2025-07-27 13:03:33] 2025-07-27 17:03:02,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:03:33] 2025-07-27 17:03:02,989 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:03:33] 2025-07-27 17:03:02,989 | INFO     | update_server=False
[2025-07-27 13:03:33] 2025-07-27 17:03:02,989 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:03:33] 2025-07-27 17:03:03,045 | INFO     | all job control threads have been joined
[2025-07-27 13:03:33] 2025-07-27 17:03:03,114 | INFO     | all payload control threads have been joined
[2025-07-27 13:03:33] 2025-07-27 17:03:03,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:03:33] 2025-07-27 17:03:03,660 | INFO     | aborting loop
[2025-07-27 13:03:33] 2025-07-27 17:03:03,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:03:33] 2025-07-27 17:03:03,904 | INFO     | all data control threads have been joined
[2025-07-27 13:03:33] 2025-07-27 17:03:03,994 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,051 | INFO     | [job] control thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,117 | INFO     | [payload] control thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,321 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,410 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,665 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:03:33] 2025-07-27 17:03:04,882 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,909 | INFO     | [data] control thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:04,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:05,306 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:05,373 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:05,387 | INFO     | [job] validate thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:05,398 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:05,726 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:05,816 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:03:33] 2025-07-27 17:03:06,819 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:08,747 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:03:33] 2025-07-27 17:03:08,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955668920128)>', '<ExcThread(monitor, started 139955376473856)>']
[2025-07-27 13:03:33] 2025-07-27 17:03:13,951 | INFO     | all workflow threads have been joined
[2025-07-27 13:03:33] 2025-07-27 17:03:13,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:03:33] 2025-07-27 17:03:13,951 | INFO     | traces error code: 0
[2025-07-27 13:03:33] 2025-07-27 17:03:13,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:03:33] 2025-07-27 17:03:29,836 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | INFO     | PID=14647 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | INFO     | .. there are 2 such processes running
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:03:33] 2025-07-27 17:03:32,925 | INFO     | [monitor] control thread has ended
[2025-07-27 13:03:33] 2025-07-27 17:03:33,041 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:03:33] 2025-07-27 17:03:33,045 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:03:33] 2025-07-27 17:03:33,048 [wrapper] pilotpid: 14647
[2025-07-27 13:03:33] 2025-07-27 17:03:33,051 [wrapper] Pilot exit status: 0
[2025-07-27 13:03:33] 2025-07-27 17:03:33,063 [wrapper] pandaids: 6743232068
[2025-07-27 13:03:33] 2025-07-27 17:03:33,095 [wrapper] cleanup supervisor_pilot 11822 14648
[2025-07-27 13:03:33] 2025-07-27 17:03:33,099 [wrapper] Test setup, not cleaning
[2025-07-27 13:03:33] 2025-07-27 17:03:33,102 [wrapper] apfmon messages muted
[2025-07-27 13:03:33] 2025-07-27 17:03:33,106 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:03:33] 2025-07-27 17:03:33,109 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:03:33]  *** Error codes and diagnostics ***
[2025-07-27 13:03:33]     "exeErrorCode": 0,
[2025-07-27 13:03:33]     "exeErrorDiag": "",
[2025-07-27 13:03:33]     "pilotErrorCode": 0,
[2025-07-27 13:03:33]     "pilotErrorDiag": "",
[2025-07-27 13:03:33]  *** Listing of results directory ***
[2025-07-27 13:03:33] total 522824
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas      5112 Jul 23 12:27 queuedata.json
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas    530466 Jul 23 12:27 pilot3.tar.gz
[2025-07-27 13:03:33] -rwx------ 1 boincer umatlas     36292 Jul 23 12:28 runpilot2-wrapper.sh
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas       100 Jul 27 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:03:33] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 11:33 run_atlas
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas       105 Jul 27 11:33 job.xml
[2025-07-27 13:03:33] -rw-r--r-- 2 boincer umatlas 305707770 Jul 27 11:33 EVNT.45668886._000032.pool.root.1
[2025-07-27 13:03:33] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:33 start_atlas.sh
[2025-07-27 13:03:33] drwxrwx--x 2 boincer umatlas      4096 Jul 27 11:33 shared
[2025-07-27 13:03:33] -rw-r--r-- 2 boincer umatlas    542877 Jul 27 11:33 input.tar.gz
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas         0 Jul 27 11:33 boinc_lockfile
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas      2538 Jul 27 11:33 pandaJob.out
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas    980101 Jul 27 11:33 agis_schedconf.cvmfs.json
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas   1593052 Jul 27 11:33 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:03:33] drwx------ 4 boincer umatlas      4096 Jul 27 11:33 pilot3
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas      6048 Jul 27 13:01 init_data.xml
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas 224116541 Jul 27 13:02 HITS.45668889._000837.pool.root.1
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas        95 Jul 27 13:02 pilot_heartbeat.json
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas       530 Jul 27 13:02 boinc_task_state.xml
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas      1044 Jul 27 13:02 memory_monitor_summary.json
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas    312738 Jul 27 13:02 log.45668889._000837.job.log.tgz.1
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas      7830 Jul 27 13:03 heartbeat.json
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas        27 Jul 27 13:03 wrapper_checkpoint.txt
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 13:03 boinc_mmap_file
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas       820 Jul 27 13:03 pilotlog.txt
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas    523442 Jul 27 13:03 log.45668889._000837.job.log.1
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas       357 Jul 27 13:03 output.list
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas       620 Jul 27 13:03 runtime_log
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas    860160 Jul 27 13:03 result.tar.gz
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas       658 Jul 27 13:03 ZnBLDmTVry7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIuLLDmOkPvJm.diag
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas      8660 Jul 27 13:03 runtime_log.err
[2025-07-27 13:03:33] -rw-r--r-- 1 boincer umatlas     21923 Jul 27 13:03 stderr.txt
[2025-07-27 13:03:33] HITS file was successfully produced:
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas 224116541 Jul 27 13:02 shared/HITS.pool.root.1
[2025-07-27 13:03:33]  *** Contents of shared directory: ***
[2025-07-27 13:03:33] total 518800
[2025-07-27 13:03:33] -rw-r--r-- 2 boincer umatlas 305707770 Jul 27 11:33 ATLAS.root_0
[2025-07-27 13:03:33] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:33 start_atlas.sh
[2025-07-27 13:03:33] -rw-r--r-- 2 boincer umatlas    542877 Jul 27 11:33 input.tar.gz
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas 224116541 Jul 27 13:02 HITS.pool.root.1
[2025-07-27 13:03:33] -rw------- 1 boincer umatlas    860160 Jul 27 13:03 result.tar.gz
13:03:34 (10063): run_atlas exited; CPU time 40496.773829
13:03:34 (10063): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN