Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:24:21 (24544): wrapper (7.7.26015): starting
11:24:21 (24544): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 11:24:21] Arguments: --nthreads 12
[2025-07-27 11:24:21] Threads: 12
[2025-07-27 11:24:21] Checking for CVMFS
[2025-07-27 11:24:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 11:24:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 11:24:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 11:24:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 11:24:21] 2.11.2.0 2979 112192 89896 148817 3 57 15212866 20275200 1 130560 0 38578042 99.972 9622801 10483 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 11:24:21] CVMFS is ok
[2025-07-27 11:24:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 11:24:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 11:24:21] Further information can be found at the LHC@home message board.
[2025-07-27 11:24:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 11:24:21] Checking for apptainer binary...
[2025-07-27 11:24:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 11:24:21] Running /usr/bin/apptainer --version
[2025-07-27 11:24:21] apptainer version 1.3.2-1.el7
[2025-07-27 11:24:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 11:24:23] c-205-21.aglt2.org
[2025-07-27 11:24:23] apptainer works
[2025-07-27 11:24:23] Set ATHENA_PROC_NUMBER=12
[2025-07-27 11:24:23] Set ATHENA_CORE_NUMBER=12
[2025-07-27 11:24:23] Starting ATLAS job with PandaID=6746386321
[2025-07-27 11:24:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 12:58:46]  *** The last 200 lines of the pilot log: ***
[2025-07-27 12:58:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 12:58:46]  replicas=None
[2025-07-27 12:58:46]  scope=mc23_13p6TeV
[2025-07-27 12:58:46]  status=None
[2025-07-27 12:58:46]  status_code=0
[2025-07-27 12:58:46]  storage_token=
[2025-07-27 12:58:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746386321/log.45758400._000084.job.log.tgz.1
[2025-07-27 12:58:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/5d/log.45758400._000084.job.log.tgz.1
[2025-07-27 12:58:46]  workdir=None
[2025-07-27 12:58:46] ]
[2025-07-27 12:58:46] 2025-07-27 16:58:05,492 | INFO     | transferring file log.45758400._000084.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746386321/log.45758400._000084.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 12:58:46] 2025-07-27 16:58:05,492 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746386321/log.45758400._000084.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758400._000084.job
[2025-07-27 12:58:46] 2025-07-27 16:58:05,515 | INFO     | adding to output.list: log.45758400._000084.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/5d/log.45758400._000084.job.log.tg
[2025-07-27 12:58:46] 2025-07-27 16:58:05,516 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 12:58:46] 2025-07-27 16:58:05,516 | INFO     | summary of transferred files:
[2025-07-27 12:58:46] 2025-07-27 16:58:05,516 | INFO     |  -- lfn=log.45758400._000084.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 12:58:46] 2025-07-27 16:58:05,516 | INFO     | stage-out finished correctly
[2025-07-27 12:58:46] 2025-07-27 16:58:07,100 | INFO     | monitor loop #419: job 0:6746386321 is in state 'finished'
[2025-07-27 12:58:46] 2025-07-27 16:58:07,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:58:46] 2025-07-27 16:58:08,782 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 12:58:46] 2025-07-27 16:58:09,621 | INFO     | monitor loop #420: job 0:6746386321 is in state 'finished'
[2025-07-27 12:58:46] 2025-07-27 16:58:09,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:58:46] 2025-07-27 16:58:09,891 | INFO     | job 6746386321 has state=finished
[2025-07-27 12:58:46] 2025-07-27 16:58:09,892 | INFO     | preparing for final server update for job 6746386321 in state='finished'
[2025-07-27 12:58:46] 2025-07-27 16:58:09,893 | INFO     | this job has now completed (state=finished)
[2025-07-27 12:58:46] 2025-07-27 16:58:09,893 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 12:58:46] 2025-07-27 16:58:09,893 | INFO     | log transfer has been attempted: DONE
[2025-07-27 12:58:46] 2025-07-27 16:58:09,893 | INFO     | job 6746386321 has finished - writing final server update
[2025-07-27 12:58:46] 2025-07-27 16:58:09,894 | INFO     | total number of processed events: 400 (read)
[2025-07-27 12:58:46] 2025-07-27 16:58:09,895 | INFO     | executing command: lscpu
[2025-07-27 12:58:46] 2025-07-27 16:58:09,922 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 12:58:46] 2025-07-27 16:58:12,125 | INFO     | monitor loop #421: job 0:6746386321 is in state 'finished'
[2025-07-27 12:58:46] 2025-07-27 16:58:12,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,280 | INFO     | PID=28135 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 12:58:46] 2025-07-27 16:58:14,567 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-27 12:58:46] 2025-07-27 16:58:14,571 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-27 12:58:46] 2025-07-27 16:58:14,573 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746386321/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,574 | INFO     | extracted standard info from prmon json
[2025-07-27 12:58:46] 2025-07-27 16:58:14,574 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 12:58:46] 2025-07-27 16:58:14,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 12:58:46] 2025-07-27 16:58:14,575 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 12:58:46] 2025-07-27 16:58:14,575 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 12:58:46] 2025-07-27 16:58:14,577 | INFO     | fitting pss+swap vs Time
[2025-07-27 12:58:46] 2025-07-27 16:58:14,578 | INFO     | sum of square deviations: 190403570.0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,578 | INFO     | sum of deviations: -13197839098.0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,578 | INFO     | mean x: 1753632774.0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,578 | INFO     | mean y: 2823035.5176470587
[2025-07-27 12:58:46] 2025-07-27 16:58:14,579 | INFO     | -- intersect: 121556022842.80801
[2025-07-27 12:58:46] 2025-07-27 16:58:14,579 | INFO     | intersect: 121556022842.80801
[2025-07-27 12:58:46] 2025-07-27 16:58:14,579 | INFO     | chi2: 0.10423229614465558
[2025-07-27 12:58:46] 2025-07-27 16:58:14,579 | INFO     | -- intersect: 121556022842.80801
[2025-07-27 12:58:46] 2025-07-27 16:58:14,579 | INFO     | current memory leak: -69.32 B/s (using 85 data points, chi2=0.10)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | could have reported an average CPU frequency of 2060 MHz (7 samples)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | ..............................
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | . Timing measurements:
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | . get job = 0 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | . initial setup = 2 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | . payload setup = 9 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,580 | INFO     | . stage-in = 0 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,581 | INFO     | . payload execution = 5578 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,581 | INFO     | . stage-out = 0 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,581 | INFO     | . log creation = 0 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,581 | INFO     | ..............................
[2025-07-27 12:58:46] 2025-07-27 16:58:14,916 | INFO     | 
[2025-07-27 12:58:46] 2025-07-27 16:58:14,916 | INFO     | job summary report
[2025-07-27 12:58:46] 2025-07-27 16:58:14,916 | INFO     | --------------------------------------------------
[2025-07-27 12:58:46] 2025-07-27 16:58:14,917 | INFO     | PanDA job id: 6746386321
[2025-07-27 12:58:46] 2025-07-27 16:58:14,917 | INFO     | task id: 45758400
[2025-07-27 12:58:46] 2025-07-27 16:58:14,917 | INFO     | errors: (none)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,917 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 12:58:46] 2025-07-27 16:58:14,917 | INFO     | pilot state: finished 
[2025-07-27 12:58:46] 2025-07-27 16:58:14,917 | INFO     | transexitcode: 0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | exeerrorcode: 0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | exeerrordiag: 
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | exitcode: 0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | exitmsg: OK
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | cpuconsumptiontime: 61529 s
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | nevents: 400
[2025-07-27 12:58:46] 2025-07-27 16:58:14,918 | INFO     | neventsw: 0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,919 | INFO     | pid: 2305
[2025-07-27 12:58:46] 2025-07-27 16:58:14,919 | INFO     | pgrp: 2305
[2025-07-27 12:58:46] 2025-07-27 16:58:14,919 | INFO     | corecount: 12
[2025-07-27 12:58:46] 2025-07-27 16:58:14,919 | INFO     | event service: False
[2025-07-27 12:58:46] 2025-07-27 16:58:14,919 | INFO     | sizes: {0: 2397233, 1: 2397488, 6: 2397750, 12: 2397778, 5592: 2424382, 5594: 2433380, 5597: 2433564, 5603: 2433758}
[2025-07-27 12:58:46] 2025-07-27 16:58:14,919 | INFO     | --------------------------------------------------
[2025-07-27 12:58:46] 2025-07-27 16:58:14,920 | INFO     | 
[2025-07-27 12:58:46] 2025-07-27 16:58:14,920 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 12:58:46] 2025-07-27 16:58:14,965 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,965 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,966 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,966 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,966 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,966 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,966 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,966 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,967 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 12:58:46] 2025-07-27 16:58:14,968 | INFO     | job 6746386321 has completed (purged errors)
[2025-07-27 12:58:46] 2025-07-27 16:58:14,969 | INFO     | overall cleanup function is called
[2025-07-27 12:58:46] 2025-07-27 16:58:15,977 | INFO     | --- collectZombieJob: --- 10, [2305]
[2025-07-27 12:58:46] 2025-07-27 16:58:15,977 | INFO     | zombie collector waiting for pid 2305
[2025-07-27 12:58:46] 2025-07-27 16:58:15,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 12:58:46] 2025-07-27 16:58:15,977 | INFO     | collected zombie processes
[2025-07-27 12:58:46] 2025-07-27 16:58:15,977 | INFO     | will attempt to kill all subprocesses of pid=2305
[2025-07-27 12:58:46] 2025-07-27 16:58:16,066 | INFO     | process IDs to be killed: [2305] (in reverse order)
[2025-07-27 12:58:46] 2025-07-27 16:58:16,117 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 12:58:46] 2025-07-27 16:58:16,118 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 12:58:46] 2025-07-27 16:58:16,121 | INFO     | did not find any defunct processes belonging to 2305
[2025-07-27 12:58:46] 2025-07-27 16:58:16,123 | INFO     | did not find any defunct processes belonging to 2305
[2025-07-27 12:58:46] 2025-07-27 16:58:16,123 | INFO     | ready for new job
[2025-07-27 12:58:46] 2025-07-27 16:58:16,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 12:58:46] 2025-07-27 16:58:16,125 | INFO     | ***************************************
[2025-07-27 12:58:46] 2025-07-27 16:58:16,125 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 12:58:46] 2025-07-27 16:58:16,125 | INFO     | ***************************************
[2025-07-27 12:58:46] 2025-07-27 16:58:16,125 | INFO     | 
[2025-07-27 12:58:46] 2025-07-27 16:58:16,126 | INFO     | architecture information:
[2025-07-27 12:58:46] 2025-07-27 16:58:16,126 | INFO     | executing command: cat /etc/os-release
[2025-07-27 12:58:46] 2025-07-27 16:58:16,141 | INFO     | cat /etc/os-release:
[2025-07-27 12:58:46] NAME="CentOS Linux"
[2025-07-27 12:58:46] VERSION="7 (Core)"
[2025-07-27 12:58:46] ID="centos"
[2025-07-27 12:58:46] ID_LIKE="rhel fedora"
[2025-07-27 12:58:46] VERSION_ID="7"
[2025-07-27 12:58:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 12:58:46] ANSI_COLOR="0;31"
[2025-07-27 12:58:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 12:58:46] HOME_URL="https://www.centos.org/"
[2025-07-27 12:58:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 12:58:46] 
[2025-07-27 12:58:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 12:58:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 12:58:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 12:58:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 12:58:46] 
[2025-07-27 12:58:46] 2025-07-27 16:58:16,141 | INFO     | ***************************************
[2025-07-27 12:58:46] 2025-07-27 16:58:16,644 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 12:58:46] 2025-07-27 16:58:16,661 | INFO     | sufficient remaining disk space (29375856640 B)
[2025-07-27 12:58:46] 2025-07-27 16:58:16,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 12:58:46] 2025-07-27 16:58:16,662 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 12:58:46] 2025-07-27 16:58:16,662 | INFO     | update_server=False
[2025-07-27 12:58:46] 2025-07-27 16:58:16,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 12:58:46] 2025-07-27 16:58:16,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:58:46] 2025-07-27 16:58:16,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 12:58:46] 2025-07-27 16:58:16,889 | INFO     | all data control threads have been joined
[2025-07-27 12:58:46] 2025-07-27 16:58:17,012 | INFO     | all payload control threads have been joined
[2025-07-27 12:58:46] 2025-07-27 16:58:17,135 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 12:58:46] 2025-07-27 16:58:17,136 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 12:58:46] 2025-07-27 16:58:17,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 12:58:46] 2025-07-27 16:58:17,152 | INFO     | will abort loop
[2025-07-27 12:58:46] 2025-07-27 16:58:17,510 | INFO     | all job control threads have been joined
[2025-07-27 12:58:46] 2025-07-27 16:58:17,668 | INFO     | [job] retrieve thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:17,668 | INFO     | [job] queue monitor thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:17,895 | INFO     | [data] control thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:17,922 | INFO     | [payload] validate_post thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,017 | INFO     | [payload] control thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,025 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,158 | INFO     | [job] job monitor thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,161 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,424 | INFO     | [data] copytool_in thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,448 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,515 | INFO     | [job] control thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,669 | INFO     | [data] copytool_out thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:18,970 | INFO     | [payload] failed_post thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:19,089 | INFO     | [job] validate thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:19,379 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 12:58:46] 2025-07-27 16:58:23,385 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:27,119 | INFO     | job.realtimelogging is not enabled
[2025-07-27 12:58:46] 2025-07-27 16:58:28,124 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 12:58:46] 2025-07-27 16:58:30,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407015421760)>', '<ExcThread(monitor, started 140405819561728)>']
[2025-07-27 12:58:46] 2025-07-27 16:58:35,062 | INFO     | all workflow threads have been joined
[2025-07-27 12:58:46] 2025-07-27 16:58:35,063 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 12:58:46] 2025-07-27 16:58:35,071 | INFO     | traces error code: 0
[2025-07-27 12:58:46] 2025-07-27 16:58:35,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 12:58:46] 2025-07-27 16:58:46,476 | INFO     | PID=28135 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 12:58:46] 2025-07-27 16:58:46,477 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 12:58:46] 2025-07-27 16:58:46,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 12:58:46] 2025-07-27 16:58:46,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 12:58:46] 2025-07-27 16:58:46,477 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 12:58:46] 2025-07-27 16:58:46,477 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 12:58:46] 2025-07-27 16:58:46,477 | INFO     | [monitor] control thread has ended
[2025-07-27 12:58:46] 2025-07-27 16:58:46,572 [wrapper] ==== pilot stdout END ====
[2025-07-27 12:58:46] 2025-07-27 16:58:46,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 12:58:46] 2025-07-27 16:58:46,580 [wrapper] pilotpid: 28135
[2025-07-27 12:58:46] 2025-07-27 16:58:46,584 [wrapper] Pilot exit status: 0
[2025-07-27 12:58:46] 2025-07-27 16:58:46,599 [wrapper] pandaids: 6746386321
[2025-07-27 12:58:46] 2025-07-27 16:58:46,639 [wrapper] cleanup supervisor_pilot 28333 28136
[2025-07-27 12:58:46] 2025-07-27 16:58:46,643 [wrapper] Test setup, not cleaning
[2025-07-27 12:58:46] 2025-07-27 16:58:46,647 [wrapper] apfmon messages muted
[2025-07-27 12:58:46] 2025-07-27 16:58:46,651 [wrapper] ==== wrapper stdout END ====
[2025-07-27 12:58:46] 2025-07-27 16:58:46,655 [wrapper] ==== wrapper stderr END ====
[2025-07-27 12:58:46]  *** Error codes and diagnostics ***
[2025-07-27 12:58:46]     "exeErrorCode": 0,
[2025-07-27 12:58:46]     "exeErrorDiag": "",
[2025-07-27 12:58:46]     "pilotErrorCode": 0,
[2025-07-27 12:58:46]     "pilotErrorDiag": "",
[2025-07-27 12:58:46]  *** Listing of results directory ***
[2025-07-27 12:58:46] total 400388
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas    530466 Jul 27 03:08 pilot3.tar.gz
[2025-07-27 12:58:46] -rwx------ 1 boincer umatlas     36292 Jul 27 03:16 runpilot2-wrapper.sh
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas      5112 Jul 27 03:16 queuedata.json
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas       100 Jul 27 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 12:58:46] -rwxr-xr-x 1 boincer umatlas      7986 Jul 27 11:24 run_atlas
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas       105 Jul 27 11:24 job.xml
[2025-07-27 12:58:46] -rw-r--r-- 2 boincer umatlas 238502740 Jul 27 11:24 EVNT.45758398._000004.pool.root.1
[2025-07-27 12:58:46] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:24 start_atlas.sh
[2025-07-27 12:58:46] drwxrwx--x 2 boincer umatlas      4096 Jul 27 11:24 shared
[2025-07-27 12:58:46] -rw-r--r-- 2 boincer umatlas    542872 Jul 27 11:24 input.tar.gz
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas         0 Jul 27 11:24 boinc_lockfile
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas      2553 Jul 27 11:24 pandaJob.out
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas    980101 Jul 27 11:24 agis_schedconf.cvmfs.json
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas   1593052 Jul 27 11:24 agis_ddmendpoints.agis.ALL.json
[2025-07-27 12:58:46] drwx------ 4 boincer umatlas      4096 Jul 27 11:24 pilot3
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas      5868 Jul 27 12:55 init_data.xml
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas 165814451 Jul 27 12:57 HITS.45758400._000084.pool.root.1
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas        95 Jul 27 12:57 pilot_heartbeat.json
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas       529 Jul 27 12:57 boinc_task_state.xml
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas      1060 Jul 27 12:58 memory_monitor_summary.json
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas    369813 Jul 27 12:58 log.45758400._000084.job.log.tgz.1
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas      7840 Jul 27 12:58 heartbeat.json
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas      8192 Jul 27 12:58 boinc_mmap_file
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas        27 Jul 27 12:58 wrapper_checkpoint.txt
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas       815 Jul 27 12:58 pilotlog.txt
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas    528489 Jul 27 12:58 log.45758400._000084.job.log.1
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas       357 Jul 27 12:58 output.list
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas       620 Jul 27 12:58 runtime_log
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas    921600 Jul 27 12:58 result.tar.gz
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas       659 Jul 27 12:58 Y2oNDmDnA07n9Rq4apOajLDm4fhM0noT9bVof3QYDmp91KDmEML3un.diag
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas      8662 Jul 27 12:58 runtime_log.err
[2025-07-27 12:58:46] -rw-r--r-- 1 boincer umatlas     21932 Jul 27 12:58 stderr.txt
[2025-07-27 12:58:46] HITS file was successfully produced:
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas 165814451 Jul 27 12:57 shared/HITS.pool.root.1
[2025-07-27 12:58:46]  *** Contents of shared directory: ***
[2025-07-27 12:58:46] total 396300
[2025-07-27 12:58:46] -rw-r--r-- 2 boincer umatlas 238502740 Jul 27 11:24 ATLAS.root_0
[2025-07-27 12:58:46] -rw-r--r-- 2 boincer umatlas     15095 Jul 27 11:24 start_atlas.sh
[2025-07-27 12:58:46] -rw-r--r-- 2 boincer umatlas    542872 Jul 27 11:24 input.tar.gz
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas 165814451 Jul 27 12:57 HITS.pool.root.1
[2025-07-27 12:58:46] -rw------- 1 boincer umatlas    921600 Jul 27 12:58 result.tar.gz
12:58:47 (24544): run_atlas exited; CPU time 61497.246175
12:58:47 (24544): called boinc_finish(0)

</stderr_txt>
]]>

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