Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:34:04 (57338): wrapper (7.7.26015): starting
12:34:04 (57338): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 12:34:04] Arguments: --nthreads 12
[2025-07-27 12:34:04] Threads: 12
[2025-07-27 12:34:04] Checking for CVMFS
[2025-07-27 12:34:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:34:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:34:04] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:34:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:34:05] 2.13.0.0 3229734 18609 339600 148818 2 439 26476637 40960000 12317 16776704 0 59585177 99.844 46362137 31279 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 12:34:05] CVMFS is ok
[2025-07-27 12:34:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:34:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:34:05] Further information can be found at the LHC@home message board.
[2025-07-27 12:34:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:34:05] Checking for apptainer binary...
[2025-07-27 12:34:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:34:05] Running /usr/bin/apptainer --version
[2025-07-27 12:34:05] apptainer version 1.4.1-1.el9
[2025-07-27 12:34:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:34:05] c6-5-7-4.aglt2.org
[2025-07-27 12:34:05] apptainer works
[2025-07-27 12:34:05] Set ATHENA_PROC_NUMBER=12
[2025-07-27 12:34:05] Set ATHENA_CORE_NUMBER=12
[2025-07-27 12:34:05] Starting ATLAS job with PandaID=6746965494
[2025-07-27 12:34:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:45:06]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:45:06]  protocol_id=None
[2025-07-27 13:45:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 13:45:06]  replicas=None
[2025-07-27 13:45:06]  scope=mc23_13p6TeV
[2025-07-27 13:45:06]  status=None
[2025-07-27 13:45:06]  status_code=0
[2025-07-27 13:45:06]  storage_token=
[2025-07-27 13:45:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746965494/log.45743349._046500.job.log.tgz.1
[2025-07-27 13:45:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/d7/log.45743349._046500.job.log.tgz.1
[2025-07-27 13:45:06]  workdir=None
[2025-07-27 13:45:06] ]
[2025-07-27 13:45:06] 2025-07-27 17:44:25,224 | INFO     | transferring file log.45743349._046500.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746965494/log.45743349._046500.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:45:06] 2025-07-27 17:44:25,225 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746965494/log.45743349._046500.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._046500.job
[2025-07-27 13:45:06] 2025-07-27 17:44:25,240 | INFO     | adding to output.list: log.45743349._046500.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/d7/log.45743349._046500.job.log.tg
[2025-07-27 13:45:06] 2025-07-27 17:44:25,241 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:45:06] 2025-07-27 17:44:25,241 | INFO     | summary of transferred files:
[2025-07-27 13:45:06] 2025-07-27 17:44:25,241 | INFO     |  -- lfn=log.45743349._046500.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:45:06] 2025-07-27 17:44:25,241 | INFO     | stage-out finished correctly
[2025-07-27 13:45:06] 2025-07-27 17:44:27,314 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:45:06] 2025-07-27 17:44:27,718 | INFO     | job 6746965494 has state=finished
[2025-07-27 13:45:06] 2025-07-27 17:44:27,718 | INFO     | preparing for final server update for job 6746965494 in state='finished'
[2025-07-27 13:45:06] 2025-07-27 17:44:27,719 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:45:06] 2025-07-27 17:44:27,719 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:45:06] 2025-07-27 17:44:27,719 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:45:06] 2025-07-27 17:44:27,720 | INFO     | job 6746965494 has finished - writing final server update
[2025-07-27 13:45:06] 2025-07-27 17:44:27,720 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:45:06] 2025-07-27 17:44:27,721 | INFO     | executing command: lscpu
[2025-07-27 13:45:06] 2025-07-27 17:44:27,775 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:45:06] 2025-07-27 17:44:30,136 | WARNING  | process 71019 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 13:45:06] 2025-07-27 17:44:30,136 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746965494/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:45:06] 2025-07-27 17:44:30,402 | INFO     | number of running child processes to parent process 71019: 1
[2025-07-27 13:45:06] 2025-07-27 17:44:30,402 | INFO     | maximum number of monitored processes: 6
[2025-07-27 13:45:06] 2025-07-27 17:44:32,718 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 13:45:06] 2025-07-27 17:44:32,726 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2922.880446428571
[2025-07-27 13:45:06] 2025-07-27 17:44:32,735 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746965494/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:45:06] 2025-07-27 17:44:32,736 | INFO     | extracted standard info from prmon json
[2025-07-27 13:45:06] 2025-07-27 17:44:32,736 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:45:06] 2025-07-27 17:44:32,736 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:45:06] 2025-07-27 17:44:32,736 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:45:06] 2025-07-27 17:44:32,736 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:45:06] 2025-07-27 17:44:32,738 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:45:06] 2025-07-27 17:44:32,738 | INFO     | sum of square deviations: 73882315.5
[2025-07-27 13:45:06] 2025-07-27 17:44:32,738 | INFO     | sum of deviations: -8575252052.500001
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | mean x: 1753636256.5
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | mean y: 2971782.209677419
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | -- intersect: 203541163650.19525
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | intersect: 203541163650.19525
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | chi2: 0.17005602616745957
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | -- intersect: 203541163650.19525
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | current memory leak: -116.07 B/s (using 62 data points, chi2=0.17)
[2025-07-27 13:45:06] 2025-07-27 17:44:32,739 | INFO     | could have reported an average CPU frequency of 2875 MHz (6 samples)
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | ..............................
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . Timing measurements:
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . get job = 0 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . initial setup = 4 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . payload setup = 8 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . stage-in = 0 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . payload execution = 4175 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . stage-out = 0 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | . log creation = 0 s
[2025-07-27 13:45:06] 2025-07-27 17:44:32,740 | INFO     | ..............................
[2025-07-27 13:45:06] 2025-07-27 17:44:33,218 | INFO     | 
[2025-07-27 13:45:06] 2025-07-27 17:44:33,218 | INFO     | job summary report
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | --------------------------------------------------
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | PanDA job id: 6746965494
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | task id: 45743349
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | errors: (none)
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | pilot state: finished 
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | transexitcode: 0
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | exeerrorcode: 0
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | exeerrordiag: 
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | exitcode: 0
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | exitmsg: OK
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | cpuconsumptiontime: 43281 s
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | nevents: 400
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | neventsw: 0
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | pid: 71019
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | pgrp: 71019
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | corecount: 12
[2025-07-27 13:45:06] 2025-07-27 17:44:33,219 | INFO     | event service: False
[2025-07-27 13:45:06] 2025-07-27 17:44:33,220 | INFO     | sizes: {0: 2397254, 1: 2397453, 6: 2397715, 11: 2397743, 4188: 2423583, 4189: 2432581, 4191: 2432765, 4197: 2432959}
[2025-07-27 13:45:06] 2025-07-27 17:44:33,220 | INFO     | --------------------------------------------------
[2025-07-27 13:45:06] 2025-07-27 17:44:33,220 | INFO     | 
[2025-07-27 13:45:06] 2025-07-27 17:44:33,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | job 6746965494 has completed (purged errors)
[2025-07-27 13:45:06] 2025-07-27 17:44:33,244 | INFO     | overall cleanup function is called
[2025-07-27 13:45:06] 2025-07-27 17:44:34,052 | INFO     | PID=62759 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 13:45:06] 2025-07-27 17:44:34,052 | INFO     | .. there are 13 such processes running
[2025-07-27 13:45:06] 2025-07-27 17:44:34,253 | INFO     | --- collectZombieJob: --- 10, [71019]
[2025-07-27 13:45:06] 2025-07-27 17:44:34,253 | INFO     | zombie collector waiting for pid 71019
[2025-07-27 13:45:06] 2025-07-27 17:44:34,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:45:06] 2025-07-27 17:44:34,253 | INFO     | collected zombie processes
[2025-07-27 13:45:06] 2025-07-27 17:44:34,253 | INFO     | will attempt to kill all subprocesses of pid=71019
[2025-07-27 13:45:06] 2025-07-27 17:44:34,490 | INFO     | process IDs to be killed: [71019] (in reverse order)
[2025-07-27 13:45:06] 2025-07-27 17:44:34,581 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:45:06] 2025-07-27 17:44:34,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:45:06] 2025-07-27 17:44:34,590 | INFO     | did not find any defunct processes belonging to 71019
[2025-07-27 13:45:06] 2025-07-27 17:44:34,600 | INFO     | did not find any defunct processes belonging to 71019
[2025-07-27 13:45:06] 2025-07-27 17:44:34,600 | INFO     | ready for new job
[2025-07-27 13:45:06] 2025-07-27 17:44:34,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:45:06] 2025-07-27 17:44:34,602 | INFO     | ***************************************
[2025-07-27 13:45:06] 2025-07-27 17:44:34,602 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:45:06] 2025-07-27 17:44:34,602 | INFO     | ***************************************
[2025-07-27 13:45:06] 2025-07-27 17:44:34,602 | INFO     | 
[2025-07-27 13:45:06] 2025-07-27 17:44:34,605 | INFO     | architecture information:
[2025-07-27 13:45:06] 2025-07-27 17:44:34,605 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:45:06] 2025-07-27 17:44:34,621 | INFO     | cat /etc/os-release:
[2025-07-27 13:45:06] NAME="CentOS Linux"
[2025-07-27 13:45:06] VERSION="7 (Core)"
[2025-07-27 13:45:06] ID="centos"
[2025-07-27 13:45:06] ID_LIKE="rhel fedora"
[2025-07-27 13:45:06] VERSION_ID="7"
[2025-07-27 13:45:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:45:06] ANSI_COLOR="0;31"
[2025-07-27 13:45:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:45:06] HOME_URL="https://www.centos.org/"
[2025-07-27 13:45:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:45:06] 
[2025-07-27 13:45:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:45:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:45:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:45:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:45:06] 
[2025-07-27 13:45:06] 2025-07-27 17:44:34,621 | INFO     | ***************************************
[2025-07-27 13:45:06] 2025-07-27 17:44:35,124 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:45:06] 2025-07-27 17:44:35,140 | INFO     | sufficient remaining disk space (75350671360 B)
[2025-07-27 13:45:06] 2025-07-27 17:44:35,141 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:45:06] 2025-07-27 17:44:35,141 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:45:06] 2025-07-27 17:44:35,141 | INFO     | update_server=False
[2025-07-27 13:45:06] 2025-07-27 17:44:35,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:45:06] 2025-07-27 17:44:35,363 | INFO     | all data control threads have been joined
[2025-07-27 13:45:06] 2025-07-27 17:44:35,409 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 13:45:06] 2025-07-27 17:44:35,409 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 13:45:06] 2025-07-27 17:44:35,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:45:06] 2025-07-27 17:44:35,410 | INFO     | will abort loop
[2025-07-27 13:45:06] 2025-07-27 17:44:35,466 | INFO     | all payload control threads have been joined
[2025-07-27 13:45:06] 2025-07-27 17:44:35,842 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:45:06] 2025-07-27 17:44:36,146 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,224 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,368 | INFO     | [data] control thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,415 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,471 | INFO     | [payload] control thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,482 | INFO     | all job control threads have been joined
[2025-07-27 13:45:06] 2025-07-27 17:44:36,727 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,878 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:36,993 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:37,210 | INFO     | [job] validate thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:37,487 | INFO     | [job] control thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:37,551 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:37,590 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:37,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:45:06] 2025-07-27 17:44:37,847 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:37,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:45:06] 2025-07-27 17:44:38,841 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:41,917 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:46,027 | INFO     | job.realtimelogging is not enabled
[2025-07-27 13:45:06] 2025-07-27 17:44:47,032 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:45:06] 2025-07-27 17:44:47,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214151493440)>', '<ExcThread(monitor, started 140213342947072)>']
[2025-07-27 13:45:06] 2025-07-27 17:44:52,492 | INFO     | all workflow threads have been joined
[2025-07-27 13:45:06] 2025-07-27 17:44:52,492 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:45:06] 2025-07-27 17:44:52,493 | INFO     | traces error code: 0
[2025-07-27 13:45:06] 2025-07-27 17:44:52,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:45:06] 2025-07-27 17:45:06,500 | INFO     | PID=62759 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 13:45:06] 2025-07-27 17:45:06,501 | INFO     | .. there are 13 such processes running
[2025-07-27 13:45:06] 2025-07-27 17:45:06,501 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:45:06] 2025-07-27 17:45:06,502 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:45:06] 2025-07-27 17:45:06,502 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:45:06] 2025-07-27 17:45:06,502 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:45:06] 2025-07-27 17:45:06,502 | INFO     | [monitor] control thread has ended
[2025-07-27 13:45:06] 2025-07-27 17:45:06,677 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:45:06] 2025-07-27 17:45:06,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:45:06] 2025-07-27 17:45:06,684 [wrapper] pilotpid: 62759
[2025-07-27 13:45:06] 2025-07-27 17:45:06,688 [wrapper] Pilot exit status: 0
[2025-07-27 13:45:06] 2025-07-27 17:45:06,702 [wrapper] pandaids: 6746965494
[2025-07-27 13:45:06] 2025-07-27 17:45:06,770 [wrapper] cleanup supervisor_pilot  213415 62760
[2025-07-27 13:45:06] 2025-07-27 17:45:06,774 [wrapper] Test setup, not cleaning
[2025-07-27 13:45:06] 2025-07-27 17:45:06,778 [wrapper] apfmon messages muted
[2025-07-27 13:45:06] 2025-07-27 17:45:06,783 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:45:06] 2025-07-27 17:45:06,787 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:45:06]  *** Error codes and diagnostics ***
[2025-07-27 13:45:06]     "exeErrorCode": 0,
[2025-07-27 13:45:06]     "exeErrorDiag": "",
[2025-07-27 13:45:06]     "pilotErrorCode": 0,
[2025-07-27 13:45:06]     "pilotErrorDiag": "",
[2025-07-27 13:45:06]  *** Listing of results directory ***
[2025-07-27 13:45:06] total 436968
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 05:06 pilot3.tar.gz
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:36 queuedata.json
[2025-07-27 13:45:06] -rwx------. 1 boincer umatlas     36292 Jul 27 05:36 runpilot2-wrapper.sh
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:45:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:34 run_atlas
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:34 job.xml
[2025-07-27 13:45:06] -rw-r--r--. 2 boincer umatlas 230638945 Jul 27 12:34 EVNT.45743347._001474.pool.root.1
[2025-07-27 13:45:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:34 start_atlas.sh
[2025-07-27 13:45:06] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:34 shared
[2025-07-27 13:45:06] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 12:34 input.tar.gz
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:34 boinc_lockfile
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 12:34 pandaJob.out
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas    980125 Jul 27 12:34 agis_schedconf.cvmfs.json
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:34 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:45:06] drwx------. 4 boincer umatlas      4096 Jul 27 12:34 pilot3
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas      6840 Jul 27 13:39 init_data.xml
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas 211397268 Jul 27 13:43 HITS.45743349._046500.pool.root.1
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas       529 Jul 27 13:43 boinc_task_state.xml
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas      1038 Jul 27 13:44 memory_monitor_summary.json
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas    348571 Jul 27 13:44 log.45743349._046500.job.log.tgz.1
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas      7829 Jul 27 13:44 heartbeat.json
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 13:44 boinc_mmap_file
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas        27 Jul 27 13:44 wrapper_checkpoint.txt
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas       821 Jul 27 13:45 pilotlog.txt
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas        95 Jul 27 13:45 pilot_heartbeat.json
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas    422918 Jul 27 13:45 log.45743349._046500.job.log.1
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas       357 Jul 27 13:45 output.list
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas       620 Jul 27 13:45 runtime_log
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas    788480 Jul 27 13:45 result.tar.gz
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 13:45 runtime_log.err
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas       653 Jul 27 13:45 1iOODmUzC07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuvULDmYZmqYn.diag
[2025-07-27 13:45:06] -rw-r--r--. 1 boincer umatlas     21858 Jul 27 13:45 stderr.txt
[2025-07-27 13:45:06] HITS file was successfully produced:
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas 211397268 Jul 27 13:43 shared/HITS.pool.root.1
[2025-07-27 13:45:06]  *** Contents of shared directory: ***
[2025-07-27 13:45:06] total 433004
[2025-07-27 13:45:06] -rw-r--r--. 2 boincer umatlas 230638945 Jul 27 12:34 ATLAS.root_0
[2025-07-27 13:45:06] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:34 start_atlas.sh
[2025-07-27 13:45:06] -rw-r--r--. 2 boincer umatlas    542905 Jul 27 12:34 input.tar.gz
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas 211397268 Jul 27 13:43 HITS.pool.root.1
[2025-07-27 13:45:06] -rw-------. 1 boincer umatlas    788480 Jul 27 13:45 result.tar.gz
13:45:08 (57338): run_atlas exited; CPU time 43370.134833
13:45:08 (57338): called boinc_finish(0)

</stderr_txt>
]]>

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