Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
04:28:44 (1642189): wrapper (7.7.26015): starting
04:28:44 (1642189): wrapper: running run_atlas (--nthreads 4)
[2025-07-29 04:28:44] Arguments: --nthreads 4
[2025-07-29 04:28:44] Threads: 4
[2025-07-29 04:28:44] Checking for CVMFS
[2025-07-29 04:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 04:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 04:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 04:28:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 04:28:47] 2.13.0.0 1642395 0 27828 148873 3 1 2946826 4096001 0 130560 0 0 0.000 1291 1800 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-29 04:28:47] CVMFS is ok
[2025-07-29 04:28:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 04:28:47] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-29 04:28:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-29 04:28:47] Further information can be found at the LHC@home message board.
[2025-07-29 04:28:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 04:28:47] Checking for apptainer binary...
[2025-07-29 04:28:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 04:28:47] Running /usr/bin/apptainer --version
[2025-07-29 04:28:47] apptainer version 1.2.3
[2025-07-29 04:28:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 04:28:47] Ryzen-7-7700-Zen4-Deb12
[2025-07-29 04:28:47] apptainer works
[2025-07-29 04:28:47] Set ATHENA_PROC_NUMBER=4
[2025-07-29 04:28:47] Set ATHENA_CORE_NUMBER=4
[2025-07-29 04:28:47] Starting ATLAS job with PandaID=6747157367
[2025-07-29 04:28:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 05:55:15]  *** The last 200 lines of the pilot log: ***
[2025-07-29 05:55:15]  is_tar=False
[2025-07-29 05:55:15]  lfn=log.45743349._046648.job.log.tgz.1
[2025-07-29 05:55:15]  mtime=0
[2025-07-29 05:55:15]  protocol_id=None
[2025-07-29 05:55:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 05:55:15]  replicas=None
[2025-07-29 05:55:15]  scope=mc23_13p6TeV
[2025-07-29 05:55:15]  status=None
[2025-07-29 05:55:15]  status_code=0
[2025-07-29 05:55:15]  storage_token=
[2025-07-29 05:55:15]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6747157367/log.45743349._046648.job.log.tgz.1
[2025-07-29 05:55:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/13/log.45743349._046648.job.log.tgz.1
[2025-07-29 05:55:15]  workdir=None
[2025-07-29 05:55:15] ]
[2025-07-29 05:55:15] 2025-07-29 03:54:36,325 | INFO     | transferring file log.45743349._046648.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6747157367/log.45743349._046648.job.log.tgz.1 to /var/lib/boinc
[2025-07-29 05:55:15] 2025-07-29 03:54:36,325 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6747157367/log.45743349._046648.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.457433
[2025-07-29 05:55:15] 2025-07-29 03:54:36,336 | INFO     | adding to output.list: log.45743349._046648.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/13/log.45743349._046648.job.log.tg
[2025-07-29 05:55:15] 2025-07-29 03:54:36,336 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 05:55:15] 2025-07-29 03:54:36,336 | INFO     | summary of transferred files:
[2025-07-29 05:55:15] 2025-07-29 03:54:36,336 | INFO     |  -- lfn=log.45743349._046648.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 05:55:15] 2025-07-29 03:54:36,336 | INFO     | stage-out finished correctly
[2025-07-29 05:55:15] 2025-07-29 03:54:37,015 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 05:55:15] 2025-07-29 03:54:37,354 | INFO     | monitor loop #385: job 0:6747157367 is in state 'finished'
[2025-07-29 05:55:15] 2025-07-29 03:54:37,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 05:55:15] 2025-07-29 03:54:39,071 | INFO     | job 6747157367 has state=finished
[2025-07-29 05:55:15] 2025-07-29 03:54:39,072 | INFO     | preparing for final server update for job 6747157367 in state='finished'
[2025-07-29 05:55:15] 2025-07-29 03:54:39,072 | INFO     | this job has now completed (state=finished)
[2025-07-29 05:55:15] 2025-07-29 03:54:39,072 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 05:55:15] 2025-07-29 03:54:39,072 | INFO     | log transfer has been attempted: DONE
[2025-07-29 05:55:15] 2025-07-29 03:54:39,072 | INFO     | job 6747157367 has finished - writing final server update
[2025-07-29 05:55:15] 2025-07-29 03:54:39,072 | INFO     | total number of processed events: 400 (read)
[2025-07-29 05:55:15] 2025-07-29 03:54:39,076 | INFO     | executing command: lscpu
[2025-07-29 05:55:15] 2025-07-29 03:54:39,090 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 05:55:15] 2025-07-29 03:54:39,855 | INFO     | monitor loop #386: job 0:6747157367 is in state 'finished'
[2025-07-29 05:55:15] 2025-07-29 03:54:39,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 05:55:15] 2025-07-29 03:54:42,358 | INFO     | monitor loop #387: job 0:6747157367 is in state 'finished'
[2025-07-29 05:55:15] 2025-07-29 03:54:42,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,364 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-29 05:55:15] 2025-07-29 03:54:44,366 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4831.313500000001
[2025-07-29 05:55:15] 2025-07-29 03:54:44,367 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6747157367/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,367 | INFO     | extracted standard info from prmon json
[2025-07-29 05:55:15] 2025-07-29 03:54:44,367 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 05:55:15] 2025-07-29 03:54:44,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 05:55:15] 2025-07-29 03:54:44,368 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 05:55:15] 2025-07-29 03:54:44,368 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 05:55:15] 2025-07-29 03:54:44,368 | INFO     | fitting pss+swap vs Time
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | sum of square deviations: 141539398.0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | sum of deviations: -7024100651.0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | mean x: 1753758788.0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | mean y: 2403961.6103896103
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | -- intersect: 87035261374.83586
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | intersect: 87035261374.83586
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | chi2: 0.03043573625216616
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | -- intersect: 87035261374.83586
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | current memory leak: -49.63 B/s (using 77 data points, chi2=0.03)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | could have reported an average CPU frequency of 4798 MHz (6 samples)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | ..............................
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . Timing measurements:
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . get job = 0 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . initial setup = 1 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . payload setup = 4 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . stage-in = 0 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . payload execution = 5112 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . stage-out = 0 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | . log creation = 0 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,369 | INFO     | ..............................
[2025-07-29 05:55:15] 2025-07-29 03:54:44,412 | INFO     | 
[2025-07-29 05:55:15] 2025-07-29 03:54:44,412 | INFO     | job summary report
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | --------------------------------------------------
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | PanDA job id: 6747157367
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | task id: 45743349
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | errors: (none)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | pilot state: finished 
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | transexitcode: 0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | exeerrorcode: 0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | exeerrordiag: 
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | exitcode: 0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | exitmsg: OK
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | cpuconsumptiontime: 19657 s
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | nevents: 400
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | neventsw: 0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | pid: 1652965
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | pgrp: 1652965
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | corecount: 4
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | event service: False
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | sizes: {0: 2391866, 3: 2392128, 11: 2392156, 5120: 2418606, 5121: 2427618, 5122: 2427674, 5129: 2427996}
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | --------------------------------------------------
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | 
[2025-07-29 05:55:15] 2025-07-29 03:54:44,413 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | job 6747157367 has completed (purged errors)
[2025-07-29 05:55:15] 2025-07-29 03:54:44,425 | INFO     | overall cleanup function is called
[2025-07-29 05:55:15] 2025-07-29 03:54:45,432 | INFO     | --- collectZombieJob: --- 10, [1652965]
[2025-07-29 05:55:15] 2025-07-29 03:54:45,432 | INFO     | zombie collector waiting for pid 1652965
[2025-07-29 05:55:15] 2025-07-29 03:54:45,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 05:55:15] 2025-07-29 03:54:45,432 | INFO     | collected zombie processes
[2025-07-29 05:55:15] 2025-07-29 03:54:45,432 | INFO     | will attempt to kill all subprocesses of pid=1652965
[2025-07-29 05:55:15] 2025-07-29 03:54:45,476 | INFO     | process IDs to be killed: [1652965] (in reverse order)
[2025-07-29 05:55:15] 2025-07-29 03:54:45,503 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 05:55:15] 2025-07-29 03:54:45,503 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 05:55:15] 2025-07-29 03:54:45,505 | INFO     | did not find any defunct processes belonging to 1652965
[2025-07-29 05:55:15] 2025-07-29 03:54:45,506 | INFO     | did not find any defunct processes belonging to 1652965
[2025-07-29 05:55:15] 2025-07-29 03:54:45,506 | INFO     | ready for new job
[2025-07-29 05:55:15] 2025-07-29 03:54:45,506 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 05:55:15] 2025-07-29 03:54:45,507 | INFO     | ***************************************
[2025-07-29 05:55:15] 2025-07-29 03:54:45,507 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 05:55:15] 2025-07-29 03:54:45,507 | INFO     | ***************************************
[2025-07-29 05:55:15] 2025-07-29 03:54:45,508 | INFO     | 
[2025-07-29 05:55:15] 2025-07-29 03:54:45,508 | INFO     | architecture information:
[2025-07-29 05:55:15] 2025-07-29 03:54:45,508 | INFO     | executing command: cat /etc/os-release
[2025-07-29 05:55:15] 2025-07-29 03:54:45,517 | INFO     | cat /etc/os-release:
[2025-07-29 05:55:15] NAME="CentOS Linux"
[2025-07-29 05:55:15] VERSION="7 (Core)"
[2025-07-29 05:55:15] ID="centos"
[2025-07-29 05:55:15] ID_LIKE="rhel fedora"
[2025-07-29 05:55:15] VERSION_ID="7"
[2025-07-29 05:55:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 05:55:15] ANSI_COLOR="0;31"
[2025-07-29 05:55:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 05:55:15] HOME_URL="https://www.centos.org/"
[2025-07-29 05:55:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 05:55:15] 
[2025-07-29 05:55:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 05:55:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 05:55:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 05:55:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 05:55:15] 
[2025-07-29 05:55:15] 2025-07-29 03:54:45,517 | INFO     | ***************************************
[2025-07-29 05:55:15] 2025-07-29 03:54:46,020 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-07-29 05:55:15] 2025-07-29 03:54:46,029 | INFO     | sufficient remaining disk space (884251557888 B)
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | INFO     | update_server=False
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 05:55:15] 2025-07-29 03:54:46,030 | INFO     | aborting loop
[2025-07-29 05:55:15] 2025-07-29 03:54:46,267 | INFO     | all job control threads have been joined
[2025-07-29 05:55:15] 2025-07-29 03:54:46,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 05:55:15] 2025-07-29 03:54:47,031 | INFO     | [job] queue monitor thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,032 | INFO     | [job] retrieve thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,032 | INFO     | [job] job monitor thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,063 | INFO     | all data control threads have been joined
[2025-07-29 05:55:15] 2025-07-29 03:54:47,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,271 | INFO     | [job] control thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,295 | INFO     | [payload] validate_post thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,395 | INFO     | all payload control threads have been joined
[2025-07-29 05:55:15] 2025-07-29 03:54:47,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 05:55:15] 2025-07-29 03:54:47,787 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,795 | INFO     | [job] validate thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,979 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:47,999 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:48,067 | INFO     | [data] control thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:48,279 | INFO     | [payload] failed_post thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:48,283 | INFO     | [data] copytool_in thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:48,401 | INFO     | [payload] control thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:48,895 | INFO     | [data] copytool_out thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:51,567 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 05:55:15] 2025-07-29 03:54:53,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415497660224)>', '<ExcThread(monitor, started 140415005083392)>']
[2025-07-29 05:55:15] 2025-07-29 03:54:58,607 | INFO     | all workflow threads have been joined
[2025-07-29 05:55:15] 2025-07-29 03:54:58,607 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 05:55:15] 2025-07-29 03:54:58,608 | INFO     | traces error code: 0
[2025-07-29 05:55:15] 2025-07-29 03:54:58,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 05:55:15] 2025-07-29 03:55:15,736 | INFO     | PID=1646446 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 05:55:15] 2025-07-29 03:55:15,736 | INFO     | .. there are 4 such processes running
[2025-07-29 05:55:15] 2025-07-29 03:55:15,760 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 05:55:15] 2025-07-29 03:55:15,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 05:55:15] 2025-07-29 03:55:15,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 05:55:15] 2025-07-29 03:55:15,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 05:55:15] 2025-07-29 03:55:15,761 | INFO     | [monitor] control thread has ended
[2025-07-29 05:55:15] 2025-07-29 03:55:15,814 [wrapper] ==== pilot stdout END ====
[2025-07-29 05:55:15] 2025-07-29 03:55:15,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 05:55:15] 2025-07-29 03:55:15,816 [wrapper] pilotpid: 1646446
[2025-07-29 05:55:15] 2025-07-29 03:55:15,817 [wrapper] Pilot exit status: 0
[2025-07-29 05:55:15] 2025-07-29 03:55:15,821 [wrapper] pandaids: 6747157367
[2025-07-29 05:55:15] 2025-07-29 03:55:15,835 [wrapper] cleanup supervisor_pilot 1729310 1646447
[2025-07-29 05:55:15] 2025-07-29 03:55:15,836 [wrapper] Test setup, not cleaning
[2025-07-29 05:55:15] 2025-07-29 03:55:15,837 [wrapper] apfmon messages muted
[2025-07-29 05:55:15] 2025-07-29 03:55:15,839 [wrapper] ==== wrapper stdout END ====
[2025-07-29 05:55:15] 2025-07-29 03:55:15,840 [wrapper] ==== wrapper stderr END ====
[2025-07-29 05:55:15]  *** Error codes and diagnostics ***
[2025-07-29 05:55:15]     "exeErrorCode": 0,
[2025-07-29 05:55:15]     "exeErrorDiag": "",
[2025-07-29 05:55:15]     "pilotErrorCode": 0,
[2025-07-29 05:55:15]     "pilotErrorDiag": "",
[2025-07-29 05:55:15]  *** Listing of results directory ***
[2025-07-29 05:55:15] total 430676
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc    530466 Jul 27 11:06 pilot3.tar.gz
[2025-07-29 05:55:15] -rwx------ 1 boinc boinc     36292 Jul 27 11:46 runpilot2-wrapper.sh
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc      5112 Jul 27 11:46 queuedata.json
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc       100 Jul 29 04:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 05:55:15] -rwxr-xr-x 1 boinc boinc      7986 Jul 29 04:28 run_atlas
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc       105 Jul 29 04:28 job.xml
[2025-07-29 05:55:15] -rw-r--r-- 2 boinc boinc     15095 Jul 29 04:28 start_atlas.sh
[2025-07-29 05:55:15] drwxrwx--x 2 boinc boinc      4096 Jul 29 04:28 shared
[2025-07-29 05:55:15] -rw-r--r-- 2 boinc boinc    542903 Jul 29 04:28 input.tar.gz
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc      9223 Jul 29 04:28 init_data.xml
[2025-07-29 05:55:15] -rw-r--r-- 2 boinc boinc 228485253 Jul 29 04:28 EVNT.45743347._001701.pool.root.1
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc         0 Jul 29 04:28 boinc_lockfile
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc      2563 Jul 29 04:28 pandaJob.out
[2025-07-29 05:55:15] -rw------- 1 boinc boinc    977340 Jul 29 04:28 agis_schedconf.cvmfs.json
[2025-07-29 05:55:15] -rw------- 1 boinc boinc   1589827 Jul 29 04:28 agis_ddmendpoints.agis.ALL.json
[2025-07-29 05:55:15] drwx------ 4 boinc boinc      4096 Jul 29 04:29 pilot3
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc       529 Jul 29 05:54 boinc_task_state.xml
[2025-07-29 05:55:15] -rw------- 1 boinc boinc 207108042 Jul 29 05:54 HITS.45743349._046648.pool.root.1
[2025-07-29 05:55:15] -rw------- 1 boinc boinc      1032 Jul 29 05:54 memory_monitor_summary.json
[2025-07-29 05:55:15] -rw------- 1 boinc boinc    260347 Jul 29 05:54 log.45743349._046648.job.log.tgz.1
[2025-07-29 05:55:15] -rw------- 1 boinc boinc      7760 Jul 29 05:54 heartbeat.json
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc      8192 Jul 29 05:55 boinc_mmap_file
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc        27 Jul 29 05:55 wrapper_checkpoint.txt
[2025-07-29 05:55:15] -rw------- 1 boinc boinc        95 Jul 29 05:55 pilot_heartbeat.json
[2025-07-29 05:55:15] -rw------- 1 boinc boinc       822 Jul 29 05:55 pilotlog.txt
[2025-07-29 05:55:15] -rw------- 1 boinc boinc    510534 Jul 29 05:55 log.45743349._046648.job.log.1
[2025-07-29 05:55:15] -rw------- 1 boinc boinc       357 Jul 29 05:55 output.list
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc       620 Jul 29 05:55 runtime_log
[2025-07-29 05:55:15] -rw------- 1 boinc boinc    788480 Jul 29 05:55 result.tar.gz
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc      8783 Jul 29 05:55 runtime_log.err
[2025-07-29 05:55:15] -rw------- 1 boinc boinc       656 Jul 29 05:55 bXtMDmT8C07n9Rq4apOajLDm4fhM0noT9bVof3QYDmhM2KDmVhNq2m.diag
[2025-07-29 05:55:15] -rw-r--r-- 1 boinc boinc     21667 Jul 29 05:55 stderr.txt
[2025-07-29 05:55:15] HITS file was successfully produced:
[2025-07-29 05:55:15] -rw------- 1 boinc boinc 207108042 Jul 29 05:54 shared/HITS.pool.root.1
[2025-07-29 05:55:15]  *** Contents of shared directory: ***
[2025-07-29 05:55:15] total 426716
[2025-07-29 05:55:15] -rw-r--r-- 2 boinc boinc     15095 Jul 29 04:28 start_atlas.sh
[2025-07-29 05:55:15] -rw-r--r-- 2 boinc boinc    542903 Jul 29 04:28 input.tar.gz
[2025-07-29 05:55:15] -rw-r--r-- 2 boinc boinc 228485253 Jul 29 04:28 ATLAS.root_0
[2025-07-29 05:55:15] -rw------- 1 boinc boinc 207108042 Jul 29 05:54 HITS.pool.root.1
[2025-07-29 05:55:15] -rw------- 1 boinc boinc    788480 Jul 29 05:55 result.tar.gz
05:55:17 (1642189): run_atlas exited; CPU time 19676.462257
05:55:17 (1642189): called boinc_finish(0)

</stderr_txt>
]]>

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