Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:54:43 (2354109): wrapper (7.7.26015): starting
12:54:43 (2354109): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 12:54:43] Arguments: --nthreads 12
[2025-07-27 12:54:43] Threads: 12
[2025-07-27 12:54:43] Checking for CVMFS
[2025-07-27 12:54:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:54:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:54:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:54:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:54:43] 2.12.6.0 1267368 18627 332212 148818 3 334 20715215 32935936 8515 16776704 0 34387732 99.699 64509478 29454 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 12:54:43] CVMFS is ok
[2025-07-27 12:54:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:54:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:54:43] Further information can be found at the LHC@home message board.
[2025-07-27 12:54:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:54:43] Checking for apptainer binary...
[2025-07-27 12:54:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:54:43] Running /usr/bin/apptainer --version
[2025-07-27 12:54:43] apptainer version 1.4.1-1.el9
[2025-07-27 12:54:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:54:43] c6-2-29-3.aglt2.org
[2025-07-27 12:54:43] apptainer works
[2025-07-27 12:54:43] Set ATHENA_PROC_NUMBER=12
[2025-07-27 12:54:43] Set ATHENA_CORE_NUMBER=12
[2025-07-27 12:54:44] Starting ATLAS job with PandaID=6747032954
[2025-07-27 12:54:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:15:59]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:15:59]  is_altstaged=None
[2025-07-27 14:15:59]  is_tar=False
[2025-07-27 14:15:59]  lfn=log.45743349._046550.job.log.tgz.1
[2025-07-27 14:15:59]  mtime=0
[2025-07-27 14:15:59]  protocol_id=None
[2025-07-27 14:15:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 14:15:59]  replicas=None
[2025-07-27 14:15:59]  scope=mc23_13p6TeV
[2025-07-27 14:15:59]  status=None
[2025-07-27 14:15:59]  status_code=0
[2025-07-27 14:15:59]  storage_token=
[2025-07-27 14:15:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6747032954/log.45743349._046550.job.log.tgz.1
[2025-07-27 14:15:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/f8/log.45743349._046550.job.log.tgz.1
[2025-07-27 14:15:59]  workdir=None
[2025-07-27 14:15:59] ]
[2025-07-27 14:15:59] 2025-07-27 18:15:20,813 | INFO     | transferring file log.45743349._046550.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6747032954/log.45743349._046550.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 14:15:59] 2025-07-27 18:15:20,813 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6747032954/log.45743349._046550.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._046550.job
[2025-07-27 14:15:59] 2025-07-27 18:15:20,834 | INFO     | adding to output.list: log.45743349._046550.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/f8/log.45743349._046550.job.log.tg
[2025-07-27 14:15:59] 2025-07-27 18:15:20,834 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 14:15:59] 2025-07-27 18:15:20,835 | INFO     | summary of transferred files:
[2025-07-27 14:15:59] 2025-07-27 18:15:20,835 | INFO     |  -- lfn=log.45743349._046550.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 14:15:59] 2025-07-27 18:15:20,835 | INFO     | stage-out finished correctly
[2025-07-27 14:15:59] 2025-07-27 18:15:21,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 14:15:59] 2025-07-27 18:15:22,494 | INFO     | job 6747032954 has state=finished
[2025-07-27 14:15:59] 2025-07-27 18:15:22,495 | INFO     | preparing for final server update for job 6747032954 in state='finished'
[2025-07-27 14:15:59] 2025-07-27 18:15:22,557 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 14:15:59] 2025-07-27 18:15:22,557 | INFO     | this job has now completed (state=finished)
[2025-07-27 14:15:59] 2025-07-27 18:15:22,557 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 14:15:59] 2025-07-27 18:15:22,557 | INFO     | log transfer has been attempted: DONE
[2025-07-27 14:15:59] 2025-07-27 18:15:22,557 | INFO     | job 6747032954 has finished - writing final server update
[2025-07-27 14:15:59] 2025-07-27 18:15:22,558 | INFO     | total number of processed events: 400 (read)
[2025-07-27 14:15:59] 2025-07-27 18:15:22,558 | INFO     | executing command: lscpu
[2025-07-27 14:15:59] 2025-07-27 18:15:22,621 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 14:15:59] 2025-07-27 18:15:23,138 | INFO     | monitor loop #348: job 0:6747032954 is in state 'finished'
[2025-07-27 14:15:59] 2025-07-27 18:15:23,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:15:59] 2025-07-27 18:15:25,643 | INFO     | monitor loop #349: job 0:6747032954 is in state 'finished'
[2025-07-27 14:15:59] 2025-07-27 18:15:25,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:15:59] 2025-07-27 18:15:27,791 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 14:15:59] 2025-07-27 18:15:27,795 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2623.889071428571
[2025-07-27 14:15:59] 2025-07-27 18:15:27,805 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6747032954/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:16:00] 2025-07-27 18:15:27,806 | INFO     | extracted standard info from prmon json
[2025-07-27 14:16:00] 2025-07-27 18:15:27,806 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:16:00] 2025-07-27 18:15:27,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:16:00] 2025-07-27 18:15:27,807 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:16:00] 2025-07-27 18:15:27,807 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:16:00] 2025-07-27 18:15:27,809 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:16:00] 2025-07-27 18:15:27,809 | INFO     | sum of square deviations: 115716573.9861112
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | sum of deviations: -5719484195.138888
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | mean x: 1753637799.5138888
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | mean y: 2433893.138888889
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | -- intersect: 86678899785.75732
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | intersect: 86678899785.75732
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | chi2: 0.1491318455345193
[2025-07-27 14:16:00] 2025-07-27 18:15:27,810 | INFO     | -- intersect: 86678899785.75732
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | current memory leak: -49.43 B/s (using 72 data points, chi2=0.15)
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | could have reported an average CPU frequency of 2625 MHz (6 samples)
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | ..............................
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | . Timing measurements:
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | . get job = 0 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | . initial setup = 3 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | . payload setup = 8 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,811 | INFO     | . stage-in = 0 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,812 | INFO     | . payload execution = 4791 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,812 | INFO     | . stage-out = 0 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,812 | INFO     | . log creation = 0 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,812 | INFO     | ..............................
[2025-07-27 14:16:00] 2025-07-27 18:15:27,915 | INFO     | 
[2025-07-27 14:16:00] 2025-07-27 18:15:27,915 | INFO     | job summary report
[2025-07-27 14:16:00] 2025-07-27 18:15:27,915 | INFO     | --------------------------------------------------
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | PanDA job id: 6747032954
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | task id: 45743349
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | errors: (none)
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | pilot state: finished 
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | transexitcode: 0
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | exeerrorcode: 0
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | exeerrordiag: 
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | exitcode: 0
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | exitmsg: OK
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | cpuconsumptiontime: 49737 s
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | nevents: 400
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | neventsw: 0
[2025-07-27 14:16:00] 2025-07-27 18:15:27,916 | INFO     | pid: 2366840
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | pgrp: 2366840
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | corecount: 12
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | event service: False
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | sizes: {0: 2397254, 1: 2397453, 6: 2397715, 12: 2397743, 4804: 2423850, 4806: 2432848, 4807: 2433032, 4813: 2433226}
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | --------------------------------------------------
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | 
[2025-07-27 14:16:00] 2025-07-27 18:15:27,917 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 14:16:00] 2025-07-27 18:15:27,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,938 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:16:00] 2025-07-27 18:15:27,940 | INFO     | job 6747032954 has completed (purged errors)
[2025-07-27 14:16:00] 2025-07-27 18:15:27,941 | INFO     | overall cleanup function is called
[2025-07-27 14:16:00] 2025-07-27 18:15:28,949 | INFO     | --- collectZombieJob: --- 10, [2366840]
[2025-07-27 14:16:00] 2025-07-27 18:15:28,949 | INFO     | zombie collector waiting for pid 2366840
[2025-07-27 14:16:00] 2025-07-27 18:15:28,949 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:16:00] 2025-07-27 18:15:28,949 | INFO     | collected zombie processes
[2025-07-27 14:16:00] 2025-07-27 18:15:28,950 | INFO     | will attempt to kill all subprocesses of pid=2366840
[2025-07-27 14:16:00] 2025-07-27 18:15:29,246 | INFO     | process IDs to be killed: [2366840] (in reverse order)
[2025-07-27 14:16:00] 2025-07-27 18:15:29,365 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:16:00] 2025-07-27 18:15:29,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:16:00] 2025-07-27 18:15:29,380 | INFO     | did not find any defunct processes belonging to 2366840
[2025-07-27 14:16:00] 2025-07-27 18:15:29,394 | INFO     | did not find any defunct processes belonging to 2366840
[2025-07-27 14:16:00] 2025-07-27 18:15:29,395 | INFO     | ready for new job
[2025-07-27 14:16:00] 2025-07-27 18:15:29,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:16:00] 2025-07-27 18:15:29,397 | INFO     | ***************************************
[2025-07-27 14:16:00] 2025-07-27 18:15:29,397 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:16:00] 2025-07-27 18:15:29,397 | INFO     | ***************************************
[2025-07-27 14:16:00] 2025-07-27 18:15:29,397 | INFO     | 
[2025-07-27 14:16:00] 2025-07-27 18:15:29,414 | INFO     | architecture information:
[2025-07-27 14:16:00] 2025-07-27 18:15:29,414 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:16:00] 2025-07-27 18:15:29,432 | INFO     | cat /etc/os-release:
[2025-07-27 14:16:00] NAME="CentOS Linux"
[2025-07-27 14:16:00] VERSION="7 (Core)"
[2025-07-27 14:16:00] ID="centos"
[2025-07-27 14:16:00] ID_LIKE="rhel fedora"
[2025-07-27 14:16:00] VERSION_ID="7"
[2025-07-27 14:16:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:16:00] ANSI_COLOR="0;31"
[2025-07-27 14:16:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:16:00] HOME_URL="https://www.centos.org/"
[2025-07-27 14:16:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:16:00] 
[2025-07-27 14:16:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:16:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:16:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:16:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:16:00] 
[2025-07-27 14:16:00] 2025-07-27 18:15:29,432 | INFO     | ***************************************
[2025-07-27 14:16:00] 2025-07-27 18:15:29,935 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 14:16:00] 2025-07-27 18:15:29,953 | INFO     | sufficient remaining disk space (76286001152 B)
[2025-07-27 14:16:00] 2025-07-27 18:15:29,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:16:00] 2025-07-27 18:15:29,954 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:16:00] 2025-07-27 18:15:29,954 | INFO     | update_server=False
[2025-07-27 14:16:00] 2025-07-27 18:15:29,954 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:16:00] 2025-07-27 18:15:29,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:16:00] 2025-07-27 18:15:29,955 | INFO     | aborting loop
[2025-07-27 14:16:00] 2025-07-27 18:15:30,396 | INFO     | all data control threads have been joined
[2025-07-27 14:16:00] 2025-07-27 18:15:30,959 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:30,961 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:30,987 | INFO     | all payload control threads have been joined
[2025-07-27 14:16:00] 2025-07-27 18:15:31,056 | INFO     | all job control threads have been joined
[2025-07-27 14:16:00] 2025-07-27 18:15:31,359 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:31,401 | INFO     | [data] control thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:31,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:16:00] 2025-07-27 18:15:31,504 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:31,900 | INFO     | [job] validate thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:31,992 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:31,993 | INFO     | [payload] control thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:32,061 | INFO     | [job] control thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:32,311 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:32,385 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:32,437 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:32,457 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:32,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:16:00] 2025-07-27 18:15:32,925 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:16:00] 2025-07-27 18:15:33,436 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:33,931 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:36,590 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:16:00] 2025-07-27 18:15:37,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203928389440)>', '<ExcThread(monitor, started 140203167577856)>']
[2025-07-27 14:16:00] 2025-07-27 18:15:42,951 | INFO     | all workflow threads have been joined
[2025-07-27 14:16:00] 2025-07-27 18:15:42,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:16:00] 2025-07-27 18:15:42,952 | INFO     | traces error code: 0
[2025-07-27 14:16:00] 2025-07-27 18:15:42,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:16:00] 2025-07-27 18:15:59,631 | INFO     | PID=2358380 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:16:00] 2025-07-27 18:15:59,632 | INFO     | .. there are 10 such processes running
[2025-07-27 14:16:00] 2025-07-27 18:15:59,632 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:16:00] 2025-07-27 18:15:59,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:16:00] 2025-07-27 18:15:59,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:16:00] 2025-07-27 18:15:59,633 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:16:00] 2025-07-27 18:15:59,633 | INFO     | [monitor] control thread has ended
[2025-07-27 14:16:00] 2025-07-27 18:15:59,813 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:16:00] 2025-07-27 18:15:59,816 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:16:00] 2025-07-27 18:15:59,819 [wrapper] pilotpid: 2358380
[2025-07-27 14:16:00] 2025-07-27 18:15:59,823 [wrapper] Pilot exit status: 0
[2025-07-27 14:16:00] 2025-07-27 18:15:59,835 [wrapper] pandaids: 6747032954
[2025-07-27 14:16:00] 2025-07-27 18:15:59,899 [wrapper] cleanup supervisor_pilot 2622776 2358381
[2025-07-27 14:16:00] 2025-07-27 18:15:59,902 [wrapper] Test setup, not cleaning
[2025-07-27 14:16:00] 2025-07-27 18:15:59,906 [wrapper] apfmon messages muted
[2025-07-27 14:16:00] 2025-07-27 18:15:59,909 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:16:00] 2025-07-27 18:15:59,912 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:16:00]  *** Error codes and diagnostics ***
[2025-07-27 14:16:00]     "exeErrorCode": 0,
[2025-07-27 14:16:00]     "exeErrorDiag": "",
[2025-07-27 14:16:00]     "pilotErrorCode": 0,
[2025-07-27 14:16:00]     "pilotErrorDiag": "",
[2025-07-27 14:16:00]  *** Listing of results directory ***
[2025-07-27 14:16:00] total 431940
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 05:06 pilot3.tar.gz
[2025-07-27 14:16:00] -rwx------. 1 boincer umatlas     36292 Jul 27 05:38 runpilot2-wrapper.sh
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:38 queuedata.json
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:16:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:54 run_atlas
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:54 job.xml
[2025-07-27 14:16:00] -rw-r--r--. 2 boincer umatlas 232587023 Jul 27 12:54 EVNT.45743347._001452.pool.root.1
[2025-07-27 14:16:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:54 start_atlas.sh
[2025-07-27 14:16:00] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:54 shared
[2025-07-27 14:16:00] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 12:54 input.tar.gz
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:54 boinc_lockfile
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 12:54 pandaJob.out
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas    980125 Jul 27 12:54 agis_schedconf.cvmfs.json
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:54 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:16:00] drwx------. 4 boincer umatlas      4096 Jul 27 12:54 pilot3
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas      6842 Jul 27 14:12 init_data.xml
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas 204168631 Jul 27 14:14 HITS.45743349._046550.pool.root.1
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas       529 Jul 27 14:14 boinc_task_state.xml
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas        95 Jul 27 14:15 pilot_heartbeat.json
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas      1035 Jul 27 14:15 memory_monitor_summary.json
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas    370015 Jul 27 14:15 log.45743349._046550.job.log.tgz.1
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas      7822 Jul 27 14:15 heartbeat.json
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:15 boinc_mmap_file
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas        27 Jul 27 14:15 wrapper_checkpoint.txt
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas       823 Jul 27 14:15 pilotlog.txt
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas    468903 Jul 27 14:15 log.45743349._046550.job.log.1
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas       357 Jul 27 14:15 output.list
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:15 runtime_log
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas    860160 Jul 27 14:15 result.tar.gz
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas      8667 Jul 27 14:15 runtime_log.err
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas       655 Jul 27 14:15 FKCNDmJ1C07n9Rq4apOajLDm4fhM0noT9bVof3QYDmKM2KDmU8cjSn.diag
[2025-07-27 14:16:00] -rw-r--r--. 1 boincer umatlas     21534 Jul 27 14:16 stderr.txt
[2025-07-27 14:16:00] HITS file was successfully produced:
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas 204168631 Jul 27 14:14 shared/HITS.pool.root.1
[2025-07-27 14:16:00]  *** Contents of shared directory: ***
[2025-07-27 14:16:00] total 427912
[2025-07-27 14:16:00] -rw-r--r--. 2 boincer umatlas 232587023 Jul 27 12:54 ATLAS.root_0
[2025-07-27 14:16:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:54 start_atlas.sh
[2025-07-27 14:16:00] -rw-r--r--. 2 boincer umatlas    542902 Jul 27 12:54 input.tar.gz
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas 204168631 Jul 27 14:14 HITS.pool.root.1
[2025-07-27 14:16:00] -rw-------. 1 boincer umatlas    860160 Jul 27 14:15 result.tar.gz
14:16:01 (2354109): run_atlas exited; CPU time 49818.081884
14:16:01 (2354109): called boinc_finish(0)

</stderr_txt>
]]>

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