Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:10:02 (878342): wrapper (7.7.26015): starting
08:10:02 (878342): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 08:10:02] Arguments: --nthreads 12
[2025-07-27 08:10:02] Threads: 12
[2025-07-27 08:10:02] Checking for CVMFS
[2025-07-27 08:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:10:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:10:03] 2.11.5.0 7039 37303 232492 148815 0 632 31305095 45568001 12596 130560 0 314032423 99.791 196482663 28829 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-27 08:10:03] CVMFS is ok
[2025-07-27 08:10:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:10:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:10:03] Further information can be found at the LHC@home message board.
[2025-07-27 08:10:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:10:03] Checking for apptainer binary...
[2025-07-27 08:10:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:10:03] Running /usr/bin/apptainer --version
[2025-07-27 08:10:03] apptainer version 1.4.1-1.el9
[2025-07-27 08:10:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:10:04] wns0037.triumf.lcg
[2025-07-27 08:10:04] apptainer works
[2025-07-27 08:10:04] Set ATHENA_PROC_NUMBER=12
[2025-07-27 08:10:04] Set ATHENA_CORE_NUMBER=12
[2025-07-27 08:10:04] Starting ATLAS job with PandaID=6747411257
[2025-07-27 08:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 08:13:51]  *** The last 200 lines of the pilot log: ***
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | INFO     | will not add max space = 0 B to job metrics
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | wrong length of table data, x=[1753629054.0], y=[1407.0] (must be same and length>=4)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | could have reported an average CPU frequency of 2342 MHz (4 samples)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | ..............................
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . Timing measurements:
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . get job = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . initial setup = 2 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . payload setup = 10 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . stage-in = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . payload execution = 21 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . stage-out = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . log creation = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | ..............................
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747411257/pilotlog.txt
[2025-07-27 08:13:51] 2025-07-27 15:13:17,964 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-27 08:13:51] - Log from pilotlog.txt -
[2025-07-27 08:13:51] 2025-07-27 15:13:17,949 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | found no stored workdir sizes
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | INFO     | will not add max space = 0 B to job metrics
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | wrong length of table data, x=[1753629054.0], y=[1407.0] (must be same and length>=4)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | could have reported an average CPU frequency of 2342 MHz (4 samples)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | ..............................
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . Timing measurements:
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . get job = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . initial setup = 2 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . payload setup = 10 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . stage-in = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . payload execution = 21 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . stage-out = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . log creation = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | ..............................
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747411257/pilotlog.txt
[2025-07-27 08:13:51] 2025-07-27 15:13:17,965 | WARNING  | 
[2025-07-27 08:13:51] [begin log extracts]
[2025-07-27 08:13:51] - Log from pilotlog.txt -
[2025-07-27 08:13:51] 2025-07-27 15:13:17,949 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | found no stored workdir sizes
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | INFO     | will not add max space = 0 B to job metrics
[2025-07-27 08:13:51] 2025-07-27 15:13:17,950 | WARNING  | wrong length of table data, x=[1753629054.0], y=[1407.0] (must be same and length>=4)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | could have reported an average CPU frequency of 2342 MHz (4 samples)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | ..............................
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . Timing measurements:
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . get job = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . initial setup = 2 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . payload setup = 10 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . stage-in = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . payload execution = 21 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . stage-out = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | . log creation = 0 s
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | ..............................
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-27 08:13:51] 2025-07-27 15:13:17,951 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6747411257/pilotlog.txt
[2025-07-27 08:13:51] [end log extracts]
[2025-07-27 08:13:51] 2025-07-27 15:13:17,965 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-27 08:13:51] 2025-07-27 15:13:17,965 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | 
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | job summary report
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | --------------------------------------------------
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | PanDA job id: 6747411257
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | task id: 45743349
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-27 08:11:05,712 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | pilot state: failed 
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | transexitcode: 65
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | exeerrorcode: 65
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 08:13:51] 2025-07-27 15:13:18,021 | INFO     | exitcode: 65
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | cpuconsumptiontime: 16 s
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | nevents: 0
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | neventsw: 0
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | pid: 888498
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | pgrp: 888498
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | corecount: 12
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | event service: False
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | sizes: {0: 2397245, 1: 2397500, 6: 2397762, 11: 2397790, 37: 2421108, 38: 2425400, 40: 2425556, 161: 2425722}
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | --------------------------------------------------
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | 
[2025-07-27 08:13:51] 2025-07-27 15:13:18,022 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-27 08:13:51] 2025-07-27 15:13:18,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,038 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | job 6747411257 has completed (purged errors)
[2025-07-27 08:13:51] 2025-07-27 15:13:18,039 | INFO     | overall cleanup function is called
[2025-07-27 08:13:51] 2025-07-27 15:13:18,633 | INFO     | PID=882106 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 08:13:51] 2025-07-27 15:13:18,633 | INFO     | .. there are 12 such processes running
[2025-07-27 08:13:51] 2025-07-27 15:13:19,045 | INFO     | --- collectZombieJob: --- 10, [888498]
[2025-07-27 08:13:51] 2025-07-27 15:13:19,045 | INFO     | zombie collector waiting for pid 888498
[2025-07-27 08:13:51] 2025-07-27 15:13:19,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 08:13:51] 2025-07-27 15:13:19,045 | INFO     | collected zombie processes
[2025-07-27 08:13:51] 2025-07-27 15:13:19,046 | INFO     | will attempt to kill all subprocesses of pid=888498
[2025-07-27 08:13:51] 2025-07-27 15:13:19,176 | INFO     | process IDs to be killed: [888498] (in reverse order)
[2025-07-27 08:13:51] 2025-07-27 15:13:19,230 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 08:13:51] 2025-07-27 15:13:19,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 08:13:51] 2025-07-27 15:13:19,236 | INFO     | did not find any defunct processes belonging to 888498
[2025-07-27 08:13:51] 2025-07-27 15:13:19,241 | INFO     | did not find any defunct processes belonging to 888498
[2025-07-27 08:13:51] 2025-07-27 15:13:19,242 | INFO     | ready for new job
[2025-07-27 08:13:51] 2025-07-27 15:13:19,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 08:13:51] 2025-07-27 15:13:19,243 | INFO     | ***************************************
[2025-07-27 08:13:51] 2025-07-27 15:13:19,243 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 08:13:51] 2025-07-27 15:13:19,243 | INFO     | ***************************************
[2025-07-27 08:13:51] 2025-07-27 15:13:19,243 | INFO     | 
[2025-07-27 08:13:51] 2025-07-27 15:13:19,245 | INFO     | architecture information:
[2025-07-27 08:13:51] 2025-07-27 15:13:19,245 | INFO     | executing command: cat /etc/os-release
[2025-07-27 08:13:51] 2025-07-27 15:13:19,258 | INFO     | cat /etc/os-release:
[2025-07-27 08:13:51] NAME="CentOS Linux"
[2025-07-27 08:13:51] VERSION="7 (Core)"
[2025-07-27 08:13:51] ID="centos"
[2025-07-27 08:13:51] ID_LIKE="rhel fedora"
[2025-07-27 08:13:51] VERSION_ID="7"
[2025-07-27 08:13:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 08:13:51] ANSI_COLOR="0;31"
[2025-07-27 08:13:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 08:13:51] HOME_URL="https://www.centos.org/"
[2025-07-27 08:13:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 08:13:51] 
[2025-07-27 08:13:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 08:13:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 08:13:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 08:13:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 08:13:51] 
[2025-07-27 08:13:51] 2025-07-27 15:13:19,258 | INFO     | ***************************************
[2025-07-27 08:13:51] 2025-07-27 15:13:19,761 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-27 08:13:51] 2025-07-27 15:13:19,777 | INFO     | sufficient remaining disk space (2131267420160 B)
[2025-07-27 08:13:51] 2025-07-27 15:13:19,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 08:13:51] 2025-07-27 15:13:19,777 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 08:13:51] 2025-07-27 15:13:19,777 | INFO     | update_server=False
[2025-07-27 08:13:51] 2025-07-27 15:13:19,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 08:13:51] 2025-07-27 15:13:19,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:13:51] 2025-07-27 15:13:19,874 | INFO     | all data control threads have been joined
[2025-07-27 08:13:51] 2025-07-27 15:13:19,889 | INFO     | all job control threads have been joined
[2025-07-27 08:13:51] 2025-07-27 15:13:20,178 | INFO     | all payload control threads have been joined
[2025-07-27 08:13:51] 2025-07-27 15:13:20,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 08:13:51] 2025-07-27 15:13:20,433 | INFO     | aborting loop
[2025-07-27 08:13:51] 2025-07-27 15:13:20,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 08:13:51] 2025-07-27 15:13:20,782 | INFO     | [job] retrieve thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:20,783 | INFO     | [job] queue monitor thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:20,879 | INFO     | [data] control thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:20,894 | INFO     | [job] control thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 08:13:51] 2025-07-27 15:13:21,100 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,184 | INFO     | [payload] control thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,360 | INFO     | [data] copytool_in thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,438 | INFO     | [job] job monitor thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,568 | INFO     | [job] validate thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,702 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,738 | INFO     | [payload] validate_post thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,812 | INFO     | [payload] failed_post thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,813 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:21,914 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:23,050 | INFO     | [data] copytool_out thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:24,715 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 08:13:51] 2025-07-27 15:13:25,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262367254336)>', '<ExcThread(monitor, started 140261501933312)>']
[2025-07-27 08:13:51] 2025-07-27 15:13:30,384 | INFO     | all workflow threads have been joined
[2025-07-27 08:13:51] 2025-07-27 15:13:30,384 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 08:13:51] 2025-07-27 15:13:30,385 | INFO     | traces error code: 0
[2025-07-27 08:13:51] 2025-07-27 15:13:30,385 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 08:13:51] 2025-07-27 15:13:50,849 | INFO     | PID=882106 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 08:13:51] 2025-07-27 15:13:50,850 | INFO     | .. there are 12 such processes running
[2025-07-27 08:13:51] 2025-07-27 15:13:50,851 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 08:13:51] 2025-07-27 15:13:50,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 08:13:51] 2025-07-27 15:13:50,851 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 08:13:51] 2025-07-27 15:13:50,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 08:13:51] 2025-07-27 15:13:50,851 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 08:13:51] 2025-07-27 15:13:50,851 | INFO     | [monitor] control thread has ended
[2025-07-27 08:13:51] 2025-07-27 15:13:50,986 [wrapper] ==== pilot stdout END ====
[2025-07-27 08:13:51] 2025-07-27 15:13:50,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 08:13:51] 2025-07-27 15:13:50,993 [wrapper] pilotpid: 882106
[2025-07-27 08:13:51] 2025-07-27 15:13:50,995 [wrapper] Pilot exit status: 0
[2025-07-27 08:13:51] 2025-07-27 15:13:51,011 [wrapper] pandaids: 6747411257
[2025-07-27 08:13:51] 2025-07-27 15:13:51,046 [wrapper] cleanup supervisor_pilot  882112 882107
[2025-07-27 08:13:51] 2025-07-27 15:13:51,055 [wrapper] Test setup, not cleaning
[2025-07-27 08:13:51] 2025-07-27 15:13:51,058 [wrapper] apfmon messages muted
[2025-07-27 08:13:51] 2025-07-27 15:13:51,060 [wrapper] ==== wrapper stdout END ====
[2025-07-27 08:13:51] 2025-07-27 15:13:51,062 [wrapper] ==== wrapper stderr END ====
[2025-07-27 08:13:51]  *** Error codes and diagnostics ***
[2025-07-27 08:13:51]     "exeErrorCode": 65,
[2025-07-27 08:13:51]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 08:13:51]     "pilotErrorCode": 1305,
[2025-07-27 08:13:51]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-27 08:13:51]  *** Listing of results directory ***
[2025-07-27 08:13:51] total 143080
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc    530466 Jul 27 04:59 pilot3.tar.gz
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc      5112 Jul 27 05:35 queuedata.json
[2025-07-27 08:13:51] -rwx------. 1 boinc boinc     36292 Jul 27 05:36 runpilot2-wrapper.sh
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc       100 Jul 27 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 08:13:51] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 08:10 run_atlas
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc       105 Jul 27 08:10 job.xml
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc      6596 Jul 27 08:10 init_data.xml
[2025-07-27 08:13:51] -rw-r--r--. 2 boinc boinc 142445039 Jul 27 08:10 EVNT.45743347._002689.pool.root.1
[2025-07-27 08:13:51] -rw-r--r--. 2 boinc boinc     15095 Jul 27 08:10 start_atlas.sh
[2025-07-27 08:13:51] drwxrwx--x. 2 boinc boinc      4096 Jul 27 08:10 shared
[2025-07-27 08:13:51] -rw-r--r--. 2 boinc boinc    542898 Jul 27 08:10 input.tar.gz
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc         0 Jul 27 08:10 boinc_lockfile
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc      2563 Jul 27 08:10 pandaJob.out
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc    980109 Jul 27 08:10 agis_schedconf.cvmfs.json
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc   1593052 Jul 27 08:10 agis_ddmendpoints.agis.ALL.json
[2025-07-27 08:13:51] drwx------. 4 boinc boinc      4096 Jul 27 08:10 pilot3
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc       522 Jul 27 08:11 boinc_task_state.xml
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc       954 Jul 27 08:11 memory_monitor_summary.json
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc     20903 Jul 27 08:11 log.45743349._048494.job.log.tgz.1
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc      8369 Jul 27 08:13 heartbeat.json
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc        22 Jul 27 08:13 wrapper_checkpoint.txt
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc      8192 Jul 27 08:13 boinc_mmap_file
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc        95 Jul 27 08:13 pilot_heartbeat.json
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc       892 Jul 27 08:13 pilotlog.txt
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc     76536 Jul 27 08:13 log.45743349._048494.job.log.1
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc       188 Jul 27 08:13 output.list
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc       620 Jul 27 08:13 runtime_log
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc    112640 Jul 27 08:13 result.tar.gz
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc      8485 Jul 27 08:13 runtime_log.err
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc       645 Jul 27 08:13 7puLDmJnF07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNHVLDmEjSPBn.diag
[2025-07-27 08:13:51] -rw-r--r--. 1 boinc boinc     21766 Jul 27 08:13 stderr.txt
[2025-07-27 08:13:51] No HITS result produced
[2025-07-27 08:13:51]  *** Contents of shared directory: ***
[2025-07-27 08:13:51] total 139772
[2025-07-27 08:13:51] -rw-r--r--. 2 boinc boinc 142445039 Jul 27 08:10 ATLAS.root_0
[2025-07-27 08:13:51] -rw-r--r--. 2 boinc boinc     15095 Jul 27 08:10 start_atlas.sh
[2025-07-27 08:13:51] -rw-r--r--. 2 boinc boinc    542898 Jul 27 08:10 input.tar.gz
[2025-07-27 08:13:51] -rw-------. 1 boinc boinc    112640 Jul 27 08:13 result.tar.gz
08:13:52 (878342): run_atlas exited; CPU time 21.393386
08:13:52 (878342): called boinc_finish(0)

</stderr_txt>
]]>

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