Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:14:08 (1812): wrapper (7.7.26015): starting
04:14:08 (1812): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 04:14:08] Arguments: --nthreads 8
[2025-07-28 04:14:08] Threads: 8
[2025-07-28 04:14:08] Checking for CVMFS
[2025-07-28 04:14:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 04:14:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 04:14:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 04:14:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 04:14:10] 2.11.2.0 3966 110342 136776 148831 0 109 21864177 25165824 4097 130560 0 77962019 99.860 48612512 3352 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-07-28 04:14:10] CVMFS is ok
[2025-07-28 04:14:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 04:14:10] Checking for apptainer binary...
[2025-07-28 04:14:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 04:14:10] Running /usr/bin/apptainer --version
[2025-07-28 04:14:10] apptainer version 1.3.2-1.el7
[2025-07-28 04:14:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 04:14:11] cg-vwn439.simple-grid.lan
[2025-07-28 04:14:11] apptainer works
[2025-07-28 04:14:11] Set ATHENA_PROC_NUMBER=8
[2025-07-28 04:14:11] Set ATHENA_CORE_NUMBER=8
[2025-07-28 04:14:11] Starting ATLAS job with PandaID=6746830541
[2025-07-28 04:14:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:46:25]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:46:25] 2025-07-28 07:11:20,961 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:46:25] 2025-07-28 07:11:20,961 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:46:25] 2025-07-28 07:11:20,970 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:46:25] 2025-07-28 07:11:20,971 | INFO     | sum of square deviations: 7562532492.5
[2025-07-28 12:46:25] 2025-07-28 07:11:20,974 | INFO     | sum of deviations: -44525304952.000015
[2025-07-28 12:46:25] 2025-07-28 07:11:20,974 | INFO     | mean x: 1753677741.5
[2025-07-28 12:46:25] 2025-07-28 07:11:20,974 | INFO     | mean y: 2534089.5172413792
[2025-07-28 12:46:25] 2025-07-28 07:11:20,974 | INFO     | -- intersect: 10327519311.763828
[2025-07-28 12:46:25] 2025-07-28 07:11:20,974 | INFO     | intersect: 10327519311.763828
[2025-07-28 12:46:25] 2025-07-28 07:11:20,975 | INFO     | chi2: 2.8614866675831956
[2025-07-28 12:46:25] 2025-07-28 07:11:20,975 | INFO     | sum of square deviations: 7178069470.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,978 | INFO     | sum of deviations: -24319009812.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,978 | INFO     | mean x: 1753677589.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,978 | INFO     | mean y: 2541997.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,978 | INFO     | -- intersect: 5943930927.856294
[2025-07-28 12:46:25] 2025-07-28 07:11:20,979 | INFO     | intersect: 5943930927.856294
[2025-07-28 12:46:25] 2025-07-28 07:11:20,979 | INFO     | chi2: 2.0951673510502173
[2025-07-28 12:46:25] 2025-07-28 07:11:20,979 | INFO     | current chi2=2.0951673510502173 (change=26.78046084276219 %)
[2025-07-28 12:46:25] 2025-07-28 07:11:20,980 | INFO     | sum of square deviations: 6806862510.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,988 | INFO     | sum of deviations: -23836809600.499992
[2025-07-28 12:46:25] 2025-07-28 07:11:20,989 | INFO     | mean x: 1753677436.5
[2025-07-28 12:46:25] 2025-07-28 07:11:20,989 | INFO     | mean y: 2542195.1107142856
[2025-07-28 12:46:25] 2025-07-28 07:11:20,989 | INFO     | -- intersect: 6143708568.477555
[2025-07-28 12:46:25] 2025-07-28 07:11:20,989 | INFO     | intersect: 6143708568.477555
[2025-07-28 12:46:25] 2025-07-28 07:11:20,990 | INFO     | chi2: 2.093923950306068
[2025-07-28 12:46:25] 2025-07-28 07:11:20,990 | INFO     | current chi2=2.093923950306068 (change=0.059346130204170185 %)
[2025-07-28 12:46:25] 2025-07-28 07:11:20,990 | INFO     | right removable region: 279
[2025-07-28 12:46:25] 2025-07-28 07:11:20,990 | INFO     | sum of square deviations: 7178069470.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,993 | INFO     | sum of deviations: -99475441705.99998
[2025-07-28 12:46:25] 2025-07-28 07:11:20,993 | INFO     | mean x: 1753677894.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,993 | INFO     | mean y: 2555755.431578947
[2025-07-28 12:46:25] 2025-07-28 07:11:20,993 | INFO     | -- intersect: 24305452773.186104
[2025-07-28 12:46:25] 2025-07-28 07:11:20,994 | INFO     | intersect: 24305452773.186104
[2025-07-28 12:46:25] 2025-07-28 07:11:20,994 | INFO     | chi2: 1.0832061704468692
[2025-07-28 12:46:25] 2025-07-28 07:11:20,994 | INFO     | current chi2=1.0832061704468692 (change=62.14533575437755 %)
[2025-07-28 12:46:25] 2025-07-28 07:11:20,995 | INFO     | sum of square deviations: 6806862510.0
[2025-07-28 12:46:25] 2025-07-28 07:11:20,997 | INFO     | sum of deviations: -100446322921.49994
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | mean x: 1753678046.5
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | mean y: 2556132.325
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | -- intersect: 25880926835.464733
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | intersect: 25880926835.464733
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | chi2: 1.0572639291607544
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | current chi2=1.0572639291607544 (change=2.394949548285206 %)
[2025-07-28 12:46:25] 2025-07-28 07:11:20,998 | INFO     | left removable region: 20
[2025-07-28 12:46:25] 2025-07-28 07:11:21,005 | INFO     | sum of square deviations: 5387301010.0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,007 | INFO     | sum of deviations: -62885785415.0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,008 | INFO     | mean x: 1753678016.0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,008 | INFO     | mean y: 2558224.7413127413
[2025-07-28 12:46:25] 2025-07-28 07:11:21,008 | INFO     | -- intersect: 20473183347.873043
[2025-07-28 12:46:25] 2025-07-28 07:11:21,008 | INFO     | intersect: 20473183347.873043
[2025-07-28 12:46:25] 2025-07-28 07:11:21,008 | INFO     | chi2: 0.2519279623379881
[2025-07-28 12:46:25] 2025-07-28 07:11:21,009 | INFO     | -- intersect: 20473183347.873043
[2025-07-28 12:46:25] 2025-07-28 07:11:21,009 | INFO     | current memory leak: -11.67 B/s (using 259 data points, chi2=0.25)
[2025-07-28 12:46:25] 2025-07-28 07:11:21,009 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | ..............................
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . Timing measurements:
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . get job = 0 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . initial setup = 2 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . payload setup = 12 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . stage-in = 0 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . payload execution = 17671 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . stage-out = 3 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | . log creation = 1 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,010 | INFO     | ..............................
[2025-07-28 12:46:25] 2025-07-28 07:11:21,223 | INFO     | 
[2025-07-28 12:46:25] 2025-07-28 07:11:21,223 | INFO     | job summary report
[2025-07-28 12:46:25] 2025-07-28 07:11:21,223 | INFO     | --------------------------------------------------
[2025-07-28 12:46:25] 2025-07-28 07:11:21,223 | INFO     | PanDA job id: 6746830541
[2025-07-28 12:46:25] 2025-07-28 07:11:21,223 | INFO     | task id: 45758747
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | errors: (none)
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | pilot state: finished 
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | transexitcode: 0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | exeerrorcode: 0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | exeerrordiag: 
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | exitcode: 0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | exitmsg: OK
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | cpuconsumptiontime: 67614 s
[2025-07-28 12:46:25] 2025-07-28 07:11:21,224 | INFO     | nevents: 400
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | neventsw: 0
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | pid: 12421
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | pgrp: 12421
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | corecount: 8
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | event service: False
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | sizes: {0: 2397296, 1: 2397495, 2: 2397495, 9: 2397785, 12: 2397813, 17687: 2429277, 17688: 2429404, 17692: 2438458, 17695: 2438514, 17786: 2438708}
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | --------------------------------------------------
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | 
[2025-07-28 12:46:25] 2025-07-28 07:11:21,225 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-07-28 12:46:25] 2025-07-28 07:11:21,712 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,713 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:46:25] 2025-07-28 07:11:21,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,715 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:46:25] 2025-07-28 07:11:21,715 | INFO     | job 6746830541 has completed (purged errors)
[2025-07-28 12:46:25] 2025-07-28 07:11:21,715 | INFO     | overall cleanup function is called
[2025-07-28 12:46:25] 2025-07-28 07:11:22,723 | INFO     | --- collectZombieJob: --- 10, [12421]
[2025-07-28 12:46:25] 2025-07-28 07:11:22,723 | INFO     | zombie collector waiting for pid 12421
[2025-07-28 12:46:25] 2025-07-28 07:11:22,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:46:25] 2025-07-28 07:11:22,723 | INFO     | collected zombie processes
[2025-07-28 12:46:25] 2025-07-28 07:11:22,724 | INFO     | will attempt to kill all subprocesses of pid=12421
[2025-07-28 12:46:25] 2025-07-28 07:11:22,864 | INFO     | process IDs to be killed: [12421] (in reverse order)
[2025-07-28 12:46:25] 2025-07-28 07:11:23,704 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:46:25] 2025-07-28 07:11:23,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:46:25] 2025-07-28 07:11:23,707 | INFO     | did not find any defunct processes belonging to 12421
[2025-07-28 12:46:25] 2025-07-28 07:11:23,710 | INFO     | did not find any defunct processes belonging to 12421
[2025-07-28 12:46:25] 2025-07-28 07:11:23,711 | INFO     | ready for new job
[2025-07-28 12:46:25] 2025-07-28 07:11:23,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:46:25] 2025-07-28 07:11:23,713 | INFO     | ***************************************
[2025-07-28 12:46:25] 2025-07-28 07:11:23,713 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:46:25] 2025-07-28 07:11:23,713 | INFO     | ***************************************
[2025-07-28 12:46:25] 2025-07-28 07:11:23,713 | INFO     | 
[2025-07-28 12:46:25] 2025-07-28 07:11:23,721 | INFO     | pilot is running in a VM
[2025-07-28 12:46:25] 2025-07-28 07:11:23,722 | INFO     | architecture information:
[2025-07-28 12:46:25] 2025-07-28 07:11:23,733 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:46:25] 2025-07-28 07:11:23,988 | INFO     | cat /etc/os-release:
[2025-07-28 12:46:25] NAME="CentOS Linux"
[2025-07-28 12:46:25] VERSION="7 (Core)"
[2025-07-28 12:46:25] ID="centos"
[2025-07-28 12:46:25] ID_LIKE="rhel fedora"
[2025-07-28 12:46:25] VERSION_ID="7"
[2025-07-28 12:46:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:46:25] ANSI_COLOR="0;31"
[2025-07-28 12:46:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:46:25] HOME_URL="https://www.centos.org/"
[2025-07-28 12:46:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:46:25] 
[2025-07-28 12:46:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:46:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:46:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:46:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:46:25] 
[2025-07-28 12:46:25] 2025-07-28 07:11:23,989 | INFO     | ***************************************
[2025-07-28 12:46:25] 2025-07-28 07:11:24,492 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-07-28 12:46:25] 2025-07-28 07:11:24,636 | INFO     | sufficient remaining disk space (496412655616 B)
[2025-07-28 12:46:25] 2025-07-28 07:11:24,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:46:25] 2025-07-28 07:11:24,636 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:46:25] 2025-07-28 07:11:24,636 | INFO     | update_server=False
[2025-07-28 12:46:25] 2025-07-28 07:11:24,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:46:25] 2025-07-28 07:11:24,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:46:25] 2025-07-28 07:11:25,020 | INFO     | all payload control threads have been joined
[2025-07-28 12:46:25] 2025-07-28 07:11:25,084 | INFO     | all job control threads have been joined
[2025-07-28 12:46:25] 2025-07-28 07:11:25,390 | INFO     | all data control threads have been joined
[2025-07-28 12:46:25] 2025-07-28 07:11:25,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:46:25] 2025-07-28 07:11:25,580 | INFO     | aborting loop
[2025-07-28 12:46:25] 2025-07-28 07:11:25,642 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:25,858 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:25,947 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:25,974 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,026 | INFO     | [payload] control thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,090 | INFO     | [job] control thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,115 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:46:25] 2025-07-28 07:11:26,357 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,396 | INFO     | [data] control thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,544 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:46:25] 2025-07-28 07:11:26,586 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,944 | INFO     | [job] validate thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:26,972 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:27,029 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:27,246 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:30,554 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:46:25] 2025-07-28 07:11:31,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570242107200)>', '<ExcThread(monitor, started 140569439364864)>']
[2025-07-28 12:46:25] 2025-07-28 07:11:36,554 | INFO     | all workflow threads have been joined
[2025-07-28 12:46:25] 2025-07-28 07:11:36,554 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:46:25] 2025-07-28 07:11:36,555 | INFO     | traces error code: 0
[2025-07-28 12:46:25] 2025-07-28 07:11:36,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:46:25] 2025-07-28 07:11:54,784 | INFO     | PID=5827 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 12:46:25] 2025-07-28 07:11:54,785 | INFO     | .. there are 9 such processes running
[2025-07-28 12:46:25] 2025-07-28 07:11:54,786 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:46:25] 2025-07-28 07:11:54,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:46:25] 2025-07-28 07:11:54,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:46:25] 2025-07-28 07:11:54,786 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:46:25] 2025-07-28 07:11:54,786 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 12:46:25] 2025-07-28 07:11:54,786 | INFO     | [monitor] control thread has ended
[2025-07-28 12:46:25] 2025-07-28 07:11:55,170 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:46:25] 2025-07-28 07:11:55,275 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:46:25] 2025-07-28 07:11:55,370 [wrapper] pilotpid: 5827
[2025-07-28 12:46:25] 2025-07-28 07:11:55,411 [wrapper] Pilot exit status: 0
[2025-07-28 12:46:25] 2025-07-28 07:11:55,820 [wrapper] pandaids: 6746830541
[2025-07-28 12:46:25] 2025-07-28 07:11:56,800 [wrapper] cleanup supervisor_pilot 23309 5828
[2025-07-28 12:46:25] 2025-07-28 07:11:56,889 [wrapper] Test setup, not cleaning
[2025-07-28 12:46:25] 2025-07-28 07:11:56,951 [wrapper] apfmon messages muted
[2025-07-28 12:46:25] 2025-07-28 07:11:57,005 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:46:25] 2025-07-28 07:11:57,057 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:46:25]  *** Error codes and diagnostics ***
[2025-07-28 12:46:25]     "exeErrorCode": 0,
[2025-07-28 12:46:25]     "exeErrorDiag": "",
[2025-07-28 12:46:25]     "pilotErrorCode": 0,
[2025-07-28 12:46:25]     "pilotErrorDiag": "",
[2025-07-28 12:46:25]  *** Listing of results directory ***
[2025-07-28 12:46:25] total 421808
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc    530466 Jul 27 11:06 pilot3.tar.gz
[2025-07-28 12:46:25] -rwx------. 1 boinc boinc     36292 Jul 27 11:28 runpilot2-wrapper.sh
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc      5112 Jul 27 11:28 queuedata.json
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc       100 Jul 28 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:46:25] -rwxr-xr-x. 1 boinc boinc      7986 Jul 28 04:14 run_atlas
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc       105 Jul 28 04:14 job.xml
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc      6392 Jul 28 04:14 init_data.xml
[2025-07-28 12:46:25] -rw-r--r--. 2 boinc boinc 244446648 Jul 28 04:14 EVNT.45758745._000001.pool.root.1
[2025-07-28 12:46:25] -rw-r--r--. 2 boinc boinc     15095 Jul 28 04:14 start_atlas.sh
[2025-07-28 12:46:25] drwxrwx--x. 2 boinc boinc        68 Jul 28 04:14 shared
[2025-07-28 12:46:25] -rw-r--r--. 2 boinc boinc    542892 Jul 28 04:14 input.tar.gz
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc         0 Jul 28 04:14 boinc_lockfile
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc      2563 Jul 28 04:14 pandaJob.out
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc    980125 Jul 28 04:14 agis_schedconf.cvmfs.json
[2025-07-28 12:46:25] drwx------. 4 boinc boinc      4096 Jul 28 04:14 pilot3
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc 179744651 Jul 28 09:08 HITS.45758747._000009.pool.root.1
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc       530 Jul 28 09:08 boinc_task_state.xml
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc      1032 Jul 28 09:09 memory_monitor_summary.json
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc   1593052 Jul 28 09:09 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc    412831 Jul 28 09:09 log.45758747._000009.job.log.tgz.1
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc      7763 Jul 28 09:11 heartbeat.json
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc        95 Jul 28 09:11 pilot_heartbeat.json
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc       889 Jul 28 09:11 pilotlog.txt
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc   1524183 Jul 28 09:11 log.45758747._000009.job.log.1
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc       357 Jul 28 09:11 output.list
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc       620 Jul 28 09:11 runtime_log
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc   1955840 Jul 28 09:11 result.tar.gz
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc      8660 Jul 28 09:11 runtime_log.err
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc       657 Jul 28 09:11 4mKODmCrC07n9Rq4apOajLDm4fhM0noT9bVof3QYDmvJ2KDmuUYU2n.diag
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc      8192 Jul 28 12:46 boinc_mmap_file
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc        28 Jul 28 12:46 wrapper_checkpoint.txt
[2025-07-28 12:46:25] -rw-r--r--. 1 boinc boinc     20520 Jul 28 12:46 stderr.txt
[2025-07-28 12:46:25] HITS file was successfully produced:
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc 179744651 Jul 28 09:08 shared/HITS.pool.root.1
[2025-07-28 12:46:25]  *** Contents of shared directory: ***
[2025-07-28 12:46:25] total 416712
[2025-07-28 12:46:25] -rw-r--r--. 2 boinc boinc 244446648 Jul 28 04:14 ATLAS.root_0
[2025-07-28 12:46:25] -rw-r--r--. 2 boinc boinc     15095 Jul 28 04:14 start_atlas.sh
[2025-07-28 12:46:25] -rw-r--r--. 2 boinc boinc    542892 Jul 28 04:14 input.tar.gz
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc 179744651 Jul 28 09:08 HITS.pool.root.1
[2025-07-28 12:46:25] -rw-------. 1 boinc boinc   1955840 Jul 28 09:11 result.tar.gz
12:46:27 (1812): run_atlas exited; CPU time 67841.982126
12:46:27 (1812): called boinc_finish(0)

</stderr_txt>
]]>

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