Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-28 12:24:47 (5216): Detected: vboxwrapper 26206
2025-07-28 12:24:47 (5216): Detected: BOINC client v8.2.4
2025-07-28 12:24:47 (5216): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-28 12:24:48 (5216): Successfully copied 'init_data.xml' to the shared directory.
2025-07-28 12:24:48 (5216): Create VM. (boinc_b175979bf895f6b5, slot#4)
2025-07-28 12:24:49 (5216): Setting Memory Size for VM. (4600MB)
2025-07-28 12:24:49 (5216): Setting CPU Count for VM. (6)
2025-07-28 12:24:49 (5216): Setting Chipset Options for VM.
2025-07-28 12:24:49 (5216): Setting Graphics Controller Options for VM.
2025-07-28 12:24:50 (5216): Setting Boot Options for VM.
2025-07-28 12:24:50 (5216): Setting Network Configuration for NAT.
2025-07-28 12:24:50 (5216): Enabling VM Network Access.
2025-07-28 12:24:50 (5216): Disabling USB Support for VM.
2025-07-28 12:24:51 (5216): Disabling COM Port Support for VM.
2025-07-28 12:24:51 (5216): Disabling LPT Port Support for VM.
2025-07-28 12:24:51 (5216): Disabling Audio Support for VM.
2025-07-28 12:24:51 (5216): Disabling Clipboard Support for VM.
2025-07-28 12:24:52 (5216): Disabling Drag and Drop Support for VM.
2025-07-28 12:24:52 (5216): Adding storage controller(s) to VM.
2025-07-28 12:24:52 (5216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-28 12:24:55 (5216): Adding VirtualBox Guest Additions to VM.
2025-07-28 12:24:55 (5216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-28 12:24:56 (5216): forwarding host port 64007 to guest port 80
2025-07-28 12:24:56 (5216): Enabling remote desktop for VM.
2025-07-28 12:24:56 (5216): Required extension pack not installed, remote desktop not enabled.
2025-07-28 12:24:56 (5216): Enabling shared directory for VM.
2025-07-28 12:24:57 (5216): Starting VM using VBoxManage interface. (boinc_b175979bf895f6b5, slot#4)
2025-07-28 12:25:03 (5216): Successfully started VM. (PID = '9692')
2025-07-28 12:25:03 (5216): Reporting VM Process ID to BOINC.
2025-07-28 12:25:03 (5216): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-28 12:25:03 (5216): Guest Log: CPUID EDX: 0x178bfbff
2025-07-28 12:25:03 (5216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-28 12:25:03 (5216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-28 12:25:03 (5216): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-28 12:25:03 (5216): Detected: Web Application Enabled (http://localhost:64007)
2025-07-28 12:25:03 (5216): Preference change detected
2025-07-28 12:25:03 (5216): Setting CPU throttle for VM. (100%)
2025-07-28 12:25:03 (5216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-28 12:25:05 (5216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-28 12:25:05 (5216): Guest Log: BIOS: Booting from Hard Disk...
2025-07-28 12:25:08 (5216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-28 12:25:08 (5216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-28 12:25:08 (5216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-28 12:26:34 (5216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-28 12:26:34 (5216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-28 12:26:39 (5216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000144 main     Log opened 2025-07-28T12:26:36.969342000Z
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000229 main     OS Product: Linux
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000249 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000263 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000278 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000279 main     Process ID: 1337
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000279 main     Package type: LINUX_64BITS_GENERIC
2025-07-28 12:26:39 (5216): Guest Log: 00:00:00.000735 main     5.2.32 r132073 started. Verbose level = 0
2025-07-28 12:26:39 (5216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-28 12:26:39 (5216): Guest Log: [INFO] Mounting shared directory
2025-07-28 12:26:39 (5216): Guest Log: [INFO] Checking for init_data.xml
2025-07-28 12:26:49 (5216): Guest Log: 00:00:10.002457 timesync vgsvcTimeSyncWorker: Radical guest time change: -25 208 349 252 000ns (GuestNow=1 753 680 388 621 674 000 ns GuestLast=1 753 705 596 970 926 000 ns fSetTimeLastLoop=true )
2025-07-28 12:27:03 (5216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-28 12:27:03 (5216): Guest Log: [INFO] Detected branch: prod
2025-07-28 12:27:04 (5216): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-28 12:27:04 (5216): Guest Log: Copying input files
2025-07-28 12:27:04 (5216): Guest Log: Copied input files into RunAtlas.
2025-07-28 12:27:04 (5216): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-28 12:27:04 (5216): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-28 12:27:04 (5216): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-28 12:27:04 (5216): Guest Log: Further information can be found at the LHC@home message board.
2025-07-28 12:27:16 (5216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-28 12:27:16 (5216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-28 12:27:16 (5216): Guest Log: 2.6.3.0 1632 0 32196 148837 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-28 12:27:17 (5216): Guest Log: copied the webapp to /var/www
2025-07-28 12:27:17 (5216): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-28 12:27:17 (5216): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-28 12:27:17 (5216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-28 12:27:17 (5216): Guest Log:  *** Starting ATLAS job. (PandaID=6746670444 taskID=45743349) ***
2025-07-28 14:05:10 (5216): Status Report: Elapsed Time: '6000.000000'
2025-07-28 14:05:10 (5216): Status Report: CPU Time: '31189.375000'
2025-07-28 14:15:46 (5216): Guest Log:  *** Job finished ***
2025-07-28 14:15:46 (5216): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:10,446 | INFO     | all workflow threads have been joined
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:10,447 | INFO     | end of generic workflow (traces error code: 0)
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:10,447 | INFO     | traces error code: 0
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:10,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,043 | INFO     | PID=5979 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,044 | INFO     | found 0 job(s) in 20 queues
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,044 | INFO     | [monitor] control thread has ended
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,129 [wrapper] ==== pilot stdout END ====
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,132 [wrapper] ==== wrapper stdout RESUME ====
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,136 [wrapper] pilotpid: 5979
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,140 [wrapper] Pilot exit status: 0
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,312 [wrapper] pandaids: 6746670444
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,339 [wrapper] cleanup supervisor_pilot  3435 5980
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,344 [wrapper] Test setup, not cleaning
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,351 [wrapper] apfmon messages muted
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,356 [wrapper] ==== wrapper stdout END ====
2025-07-28 14:15:46 (5216): Guest Log: 2025-07-28 07:15:24,360 [wrapper] ==== wrapper stderr END ====
2025-07-28 14:15:46 (5216): Guest Log:  *** Error codes and diagnostics ***
2025-07-28 14:15:46 (5216): Guest Log:     "exeErrorCode": 0,
2025-07-28 14:15:46 (5216): Guest Log:     "exeErrorDiag": "",
2025-07-28 14:15:46 (5216): Guest Log:     "pilotErrorCode": 0,
2025-07-28 14:15:46 (5216): Guest Log:     "pilotErrorDiag": "",
2025-07-28 14:15:46 (5216): Guest Log:  *** Listing of results directory ***
2025-07-28 14:15:46 (5216): Guest Log: total 207240
2025-07-28 14:15:46 (5216): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 27 08:38 pilot3.tar.gz
2025-07-28 14:15:46 (5216): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 27 08:44 queuedata.json
2025-07-28 14:15:46 (5216): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 27 08:44 runpilot2-wrapper.sh
2025-07-28 14:15:46 (5216): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 28 05:26 start_atlas.sh
2025-07-28 14:15:46 (5216): Guest Log: -rwxr-xr-x. 1 atlas atlas    542901 Jul 28 05:26 input.tar.gz
2025-07-28 14:15:46 (5216): Guest Log: -rwxr-xr-x. 1 atlas atlas      8494 Jul 28 05:26 init_data.xml
2025-07-28 14:15:46 (5216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 28 05:26 EVNT.45743347._001240.pool.root.1 -> /data/./ATLAS.root_0
2025-07-28 14:15:46 (5216): Guest Log: -rw-r--r--. 1 atlas atlas      2562 Jul 28 05:26 pandaJob.out
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 28 05:28 agis_schedconf.cvmfs.json
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 28 05:28 agis_ddmendpoints.agis.ALL.json
2025-07-28 14:15:46 (5216): Guest Log: drwx------. 4 atlas atlas      4096 Jul 28 05:28 pilot3
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas 206662976 Jul 28 07:14 HITS.45743349._046293.pool.root.1
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas      1024 Jul 28 07:14 memory_monitor_summary.json
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas    300959 Jul 28 07:14 log.45743349._046293.job.log.tgz.1
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas      7782 Jul 28 07:14 heartbeat.json
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas        95 Jul 28 07:14 pilot_heartbeat.json
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas       744 Jul 28 07:15 pilotlog.txt
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas    569469 Jul 28 07:15 log.45743349._046293.job.log.1
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas       357 Jul 28 07:15 output.list
2025-07-28 14:15:46 (5216): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 28 07:15 runtime_log
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas    890880 Jul 28 07:15 result.tar.gz
2025-07-28 14:15:46 (5216): Guest Log: -rw-r--r--. 1 atlas atlas      8629 Jul 28 07:15 runtime_log.err
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas       664 Jul 28 07:15 0OCMDm8AC07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEnULDmggjthm.diag
2025-07-28 14:15:46 (5216): Guest Log: Looking for outputfile HITS.45743349._046293.pool.root.1
2025-07-28 14:15:46 (5216): Guest Log: HITS file was successfully produced
2025-07-28 14:15:46 (5216): Guest Log: -rw-------. 1 atlas atlas 206662976 Jul 28 07:14 /home/atlas/RunAtlas/HITS.45743349._046293.pool.root.1
2025-07-28 14:15:47 (5216): Guest Log: Successfully finished the ATLAS job!
2025-07-28 14:15:47 (5216): Guest Log: Copying the results back to the shared directory!
2025-07-28 14:15:47 (5216): Guest Log:  *** Contents of shared directory: ***
2025-07-28 14:15:47 (5216): Guest Log: total 430156
2025-07-28 14:15:47 (5216): Guest Log: -rwxrwxrwx. 1 root root 232346620 Jul 28 05:24 ATLAS.root_0
2025-07-28 14:15:47 (5216): Guest Log: -rwxrwxrwx. 1 root root 206662976 Jul 28  2025 HITS.pool.root.1
2025-07-28 14:15:47 (5216): Guest Log: -rwxrwxrwx. 1 root root      8494 Jul 28 05:24 init_data.xml
2025-07-28 14:15:47 (5216): Guest Log: -rwxrwxrwx. 1 root root    542901 Jul 27 14:38 input.tar.gz
2025-07-28 14:15:47 (5216): Guest Log: -rwxrwxrwx. 1 root root    890880 Jul 28  2025 result.tar.gz
2025-07-28 14:15:47 (5216): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 27 14:38 start_atlas.sh
2025-07-28 14:15:47 (5216): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-28 14:15:47 (5216): VM Completion File Detected.
2025-07-28 14:15:47 (5216): Powering off VM.
2025-07-28 14:15:48 (5216): Successfully stopped VM.
2025-07-28 14:15:48 (5216): Deregistering VM. (boinc_b175979bf895f6b5, slot#4)
2025-07-28 14:15:48 (5216): Removing network bandwidth throttle group from VM.
2025-07-28 14:15:48 (5216): Removing VM from VirtualBox.
14:15:53 (5216): called boinc_finish(0)

</stderr_txt>
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