Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:21 (2556031): wrapper (7.7.26015): starting
10:30:21 (2556031): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 10:30:21] Arguments: --nthreads 8
[2025-07-27 10:30:21] Threads: 8
[2025-07-27 10:30:21] Checking for CVMFS
[2025-07-27 10:30:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 10:30:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 10:30:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 10:30:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 10:30:21] 2.13.1.0 116451 8291 241928 148815 3 449 29581924 40960001 18162 16776704 0 22464013 99.780 14800893 27452 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 10:30:21] CVMFS is ok
[2025-07-27 10:30:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 10:30:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 10:30:21] Further information can be found at the LHC@home message board.
[2025-07-27 10:30:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 10:30:21] Checking for apptainer binary...
[2025-07-27 10:30:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 10:30:21] Running /usr/bin/apptainer --version
[2025-07-27 10:30:21] apptainer version 1.4.1-1.el9
[2025-07-27 10:30:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 10:30:21] c-211-35-1.aglt2.org
[2025-07-27 10:30:21] apptainer works
[2025-07-27 10:30:21] Set ATHENA_PROC_NUMBER=8
[2025-07-27 10:30:21] Set ATHENA_CORE_NUMBER=8
[2025-07-27 10:30:22] Starting ATLAS job with PandaID=6746242737
[2025-07-27 10:30:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 14:38:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 14:38:53] 2025-07-27 18:38:18,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 14:38:53] 2025-07-27 18:38:19,995 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 14:38:53] 2025-07-27 18:38:20,021 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2467.8916666666673
[2025-07-27 14:38:53] 2025-07-27 18:38:20,055 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6746242737/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,056 | INFO     | extracted standard info from prmon json
[2025-07-27 14:38:53] 2025-07-27 18:38:20,056 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 14:38:53] 2025-07-27 18:38:20,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 14:38:53] 2025-07-27 18:38:20,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 14:38:53] 2025-07-27 18:38:20,057 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 14:38:53] 2025-07-27 18:38:20,062 | INFO     | fitting pss+swap vs Time
[2025-07-27 14:38:53] 2025-07-27 18:38:20,063 | INFO     | sum of square deviations: 4449145594.724245
[2025-07-27 14:38:53] 2025-07-27 18:38:20,065 | INFO     | sum of deviations: 14415554578.078192
[2025-07-27 14:38:53] 2025-07-27 18:38:20,065 | INFO     | mean x: 1753634065.489712
[2025-07-27 14:38:53] 2025-07-27 18:38:20,065 | INFO     | mean y: 2514881.83127572
[2025-07-27 14:38:53] 2025-07-27 18:38:20,065 | INFO     | -- intersect: -5679386742.386284
[2025-07-27 14:38:53] 2025-07-27 18:38:20,065 | INFO     | intersect: -5679386742.386284
[2025-07-27 14:38:53] 2025-07-27 18:38:20,066 | INFO     | chi2: 1.6128208720333967
[2025-07-27 14:38:53] 2025-07-27 18:38:20,066 | INFO     | sum of square deviations: 4180144286.0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,068 | INFO     | sum of deviations: 13617493572.000004
[2025-07-27 14:38:53] 2025-07-27 18:38:20,069 | INFO     | mean x: 1753633913.0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,069 | INFO     | mean y: 2514433.718487395
[2025-07-27 14:38:53] 2025-07-27 18:38:20,069 | INFO     | -- intersect: -5710230606.661373
[2025-07-27 14:38:53] 2025-07-27 18:38:20,071 | INFO     | intersect: -5710230606.661373
[2025-07-27 14:38:53] 2025-07-27 18:38:20,072 | INFO     | chi2: 1.6124324280519802
[2025-07-27 14:38:53] 2025-07-27 18:38:20,072 | INFO     | current chi2=1.6124324280519802 (change=0.024084756599586695 %)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,072 | INFO     | right removable region: 237
[2025-07-27 14:38:53] 2025-07-27 18:38:20,072 | INFO     | sum of square deviations: 4180071696.0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,074 | INFO     | sum of deviations: -24781381286.000004
[2025-07-27 14:38:53] 2025-07-27 18:38:20,075 | INFO     | mean x: 1753634218.0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,075 | INFO     | mean y: 2536909.537815126
[2025-07-27 14:38:53] 2025-07-27 18:38:20,075 | INFO     | -- intersect: 10398884473.150143
[2025-07-27 14:38:53] 2025-07-27 18:38:20,075 | INFO     | intersect: 10398884473.150143
[2025-07-27 14:38:53] 2025-07-27 18:38:20,076 | INFO     | chi2: 0.11651139875614865
[2025-07-27 14:38:53] 2025-07-27 18:38:20,076 | INFO     | current chi2=0.11651139875614865 (change=92.77592442059269 %)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,076 | INFO     | sum of square deviations: 3922067772.223183
[2025-07-27 14:38:53] 2025-07-27 18:38:20,078 | INFO     | sum of deviations: -27449291486.244644
[2025-07-27 14:38:53] 2025-07-27 18:38:20,078 | INFO     | mean x: 1753634370.5107296
[2025-07-27 14:38:53] 2025-07-27 18:38:20,078 | INFO     | mean y: 2538457.4978540773
[2025-07-27 14:38:53] 2025-07-27 18:38:20,078 | INFO     | -- intersect: 12275661664.943287
[2025-07-27 14:38:53] 2025-07-27 18:38:20,079 | INFO     | intersect: 12275661664.943287
[2025-07-27 14:38:53] 2025-07-27 18:38:20,079 | INFO     | chi2: 0.0924752106538996
[2025-07-27 14:38:53] 2025-07-27 18:38:20,079 | INFO     | current chi2=0.0924752106538996 (change=20.62990261798791 %)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,079 | INFO     | left removable region: 20
[2025-07-27 14:38:53] 2025-07-27 18:38:20,080 | INFO     | sum of square deviations: 3168348108.239621
[2025-07-27 14:38:53] 2025-07-27 18:38:20,081 | INFO     | sum of deviations: -18904366037.60369
[2025-07-27 14:38:53] 2025-07-27 18:38:20,081 | INFO     | mean x: 1753634492.5069125
[2025-07-27 14:38:53] 2025-07-27 18:38:20,082 | INFO     | mean y: 2532992.069124424
[2025-07-27 14:38:53] 2025-07-27 18:38:20,082 | INFO     | -- intersect: 10465824022.592098
[2025-07-27 14:38:53] 2025-07-27 18:38:20,082 | INFO     | intersect: 10465824022.592098
[2025-07-27 14:38:53] 2025-07-27 18:38:20,082 | INFO     | chi2: 0.08100546887777801
[2025-07-27 14:38:53] 2025-07-27 18:38:20,082 | INFO     | -- intersect: 10465824022.592098
[2025-07-27 14:38:53] 2025-07-27 18:38:20,082 | INFO     | current memory leak: -5.97 B/s (using 217 data points, chi2=0.08)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,084 | INFO     | could have reported an average CPU frequency of 2488 MHz (12 samples)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,084 | INFO     | ..............................
[2025-07-27 14:38:53] 2025-07-27 18:38:20,084 | INFO     | . Timing measurements:
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . get job = 0 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . initial setup = 2 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . payload setup = 14 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . stage-in = 0 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . payload execution = 14812 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . stage-out = 2 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | . log creation = 0 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,085 | INFO     | ..............................
[2025-07-27 14:38:53] 2025-07-27 18:38:20,260 | INFO     | 
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | job summary report
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | --------------------------------------------------
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | PanDA job id: 6746242737
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | task id: 45759175
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | errors: (none)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | pilot state: finished 
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | transexitcode: 0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | exeerrorcode: 0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | exeerrordiag: 
[2025-07-27 14:38:53] 2025-07-27 18:38:20,261 | INFO     | exitcode: 0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | exitmsg: OK
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | cpuconsumptiontime: 76912 s
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | nevents: 400
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | neventsw: 0
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | pid: 2568122
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | pgrp: 2568122
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | corecount: 8
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | event service: False
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | sizes: {0: 2397476, 1: 2397476, 6: 2397766, 11: 2397794, 14831: 2428813, 14834: 2437995, 14847: 2438133}
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | --------------------------------------------------
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | 
[2025-07-27 14:38:53] 2025-07-27 18:38:20,262 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-27 14:38:53] 2025-07-27 18:38:20,292 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,295 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,295 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 14:38:53] 2025-07-27 18:38:20,295 | INFO     | job 6746242737 has completed (purged errors)
[2025-07-27 14:38:53] 2025-07-27 18:38:20,295 | INFO     | overall cleanup function is called
[2025-07-27 14:38:53] 2025-07-27 18:38:20,349 | INFO     | PID=2559774 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 14:38:53] 2025-07-27 18:38:20,349 | INFO     | .. there are 15 such processes running
[2025-07-27 14:38:53] 2025-07-27 18:38:21,319 | INFO     | --- collectZombieJob: --- 10, [2568122]
[2025-07-27 14:38:53] 2025-07-27 18:38:21,319 | INFO     | zombie collector waiting for pid 2568122
[2025-07-27 14:38:53] 2025-07-27 18:38:21,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 14:38:53] 2025-07-27 18:38:21,319 | INFO     | collected zombie processes
[2025-07-27 14:38:53] 2025-07-27 18:38:21,319 | INFO     | will attempt to kill all subprocesses of pid=2568122
[2025-07-27 14:38:53] 2025-07-27 18:38:21,696 | INFO     | process IDs to be killed: [2568122] (in reverse order)
[2025-07-27 14:38:53] 2025-07-27 18:38:21,823 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 14:38:53] 2025-07-27 18:38:21,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 14:38:53] 2025-07-27 18:38:21,841 | INFO     | did not find any defunct processes belonging to 2568122
[2025-07-27 14:38:53] 2025-07-27 18:38:21,857 | INFO     | did not find any defunct processes belonging to 2568122
[2025-07-27 14:38:53] 2025-07-27 18:38:21,858 | INFO     | ready for new job
[2025-07-27 14:38:53] 2025-07-27 18:38:21,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 14:38:53] 2025-07-27 18:38:21,861 | INFO     | ***************************************
[2025-07-27 14:38:53] 2025-07-27 18:38:21,861 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 14:38:53] 2025-07-27 18:38:21,861 | INFO     | ***************************************
[2025-07-27 14:38:53] 2025-07-27 18:38:21,862 | INFO     | 
[2025-07-27 14:38:53] 2025-07-27 18:38:21,868 | INFO     | architecture information:
[2025-07-27 14:38:53] 2025-07-27 18:38:21,869 | INFO     | executing command: cat /etc/os-release
[2025-07-27 14:38:53] 2025-07-27 18:38:21,892 | INFO     | cat /etc/os-release:
[2025-07-27 14:38:53] NAME="CentOS Linux"
[2025-07-27 14:38:53] VERSION="7 (Core)"
[2025-07-27 14:38:53] ID="centos"
[2025-07-27 14:38:53] ID_LIKE="rhel fedora"
[2025-07-27 14:38:53] VERSION_ID="7"
[2025-07-27 14:38:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 14:38:53] ANSI_COLOR="0;31"
[2025-07-27 14:38:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 14:38:53] HOME_URL="https://www.centos.org/"
[2025-07-27 14:38:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 14:38:53] 
[2025-07-27 14:38:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 14:38:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 14:38:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 14:38:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 14:38:53] 
[2025-07-27 14:38:53] 2025-07-27 18:38:21,892 | INFO     | ***************************************
[2025-07-27 14:38:53] 2025-07-27 18:38:22,396 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-27 14:38:53] 2025-07-27 18:38:22,431 | INFO     | sufficient remaining disk space (129131085824 B)
[2025-07-27 14:38:53] 2025-07-27 18:38:22,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 14:38:53] 2025-07-27 18:38:22,431 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 14:38:53] 2025-07-27 18:38:22,431 | INFO     | update_server=False
[2025-07-27 14:38:53] 2025-07-27 18:38:22,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 14:38:53] 2025-07-27 18:38:22,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 14:38:53] 2025-07-27 18:38:22,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:38:53] 2025-07-27 18:38:22,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 14:38:53] 2025-07-27 18:38:22,432 | INFO     | aborting loop
[2025-07-27 14:38:53] 2025-07-27 18:38:22,989 | INFO     | all data control threads have been joined
[2025-07-27 14:38:53] 2025-07-27 18:38:23,261 | INFO     | all payload control threads have been joined
[2025-07-27 14:38:53] 2025-07-27 18:38:23,436 | INFO     | [job] retrieve thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:23,440 | INFO     | [job] job monitor thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:23,652 | INFO     | all job control threads have been joined
[2025-07-27 14:38:53] 2025-07-27 18:38:23,658 | INFO     | [job] validate thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:23,668 | INFO     | [data] copytool_in thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:23,995 | INFO     | [data] control thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,061 | INFO     | [payload] failed_post thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,201 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,268 | INFO     | [payload] control thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,323 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,349 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,439 | INFO     | [data] copytool_out thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,658 | INFO     | [job] control thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:24,664 | INFO     | [payload] validate_post thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:25,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 14:38:53] 2025-07-27 18:38:26,279 | INFO     | [job] queue monitor thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:26,441 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:32,987 | INFO     | job.realtimelogging is not enabled
[2025-07-27 14:38:53] 2025-07-27 18:38:33,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 14:38:53] 2025-07-27 18:38:36,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661155321664)>', '<ExcThread(monitor, started 139660881794816)>']
[2025-07-27 14:38:53] 2025-07-27 18:38:41,074 | INFO     | all workflow threads have been joined
[2025-07-27 14:38:53] 2025-07-27 18:38:41,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 14:38:53] 2025-07-27 18:38:41,078 | INFO     | traces error code: 0
[2025-07-27 14:38:53] 2025-07-27 18:38:41,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 14:38:53] 2025-07-27 18:38:53,028 | INFO     | PID=2559774 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 14:38:53] 2025-07-27 18:38:53,028 | INFO     | .. there are 15 such processes running
[2025-07-27 14:38:53] 2025-07-27 18:38:53,028 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 14:38:53] 2025-07-27 18:38:53,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 14:38:53] 2025-07-27 18:38:53,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 14:38:53] 2025-07-27 18:38:53,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 14:38:53] 2025-07-27 18:38:53,029 | INFO     | [monitor] control thread has ended
[2025-07-27 14:38:53] 2025-07-27 18:38:53,302 [wrapper] ==== pilot stdout END ====
[2025-07-27 14:38:53] 2025-07-27 18:38:53,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 14:38:53] 2025-07-27 18:38:53,314 [wrapper] pilotpid: 2559774
[2025-07-27 14:38:53] 2025-07-27 18:38:53,318 [wrapper] Pilot exit status: 0
[2025-07-27 14:38:53] 2025-07-27 18:38:53,348 [wrapper] pandaids: 6746242737
[2025-07-27 14:38:53] 2025-07-27 18:38:53,429 [wrapper] cleanup supervisor_pilot 2934164 2559775
[2025-07-27 14:38:53] 2025-07-27 18:38:53,442 [wrapper] Test setup, not cleaning
[2025-07-27 14:38:53] 2025-07-27 18:38:53,458 [wrapper] apfmon messages muted
[2025-07-27 14:38:53] 2025-07-27 18:38:53,473 [wrapper] ==== wrapper stdout END ====
[2025-07-27 14:38:53] 2025-07-27 18:38:53,485 [wrapper] ==== wrapper stderr END ====
[2025-07-27 14:38:53]  *** Error codes and diagnostics ***
[2025-07-27 14:38:53]     "exeErrorCode": 0,
[2025-07-27 14:38:53]     "exeErrorDiag": "",
[2025-07-27 14:38:53]     "pilotErrorCode": 0,
[2025-07-27 14:38:53]     "pilotErrorDiag": "",
[2025-07-27 14:38:53]  *** Listing of results directory ***
[2025-07-27 14:38:53] total 383524
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 02:09 pilot3.tar.gz
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 02:33 queuedata.json
[2025-07-27 14:38:53] -rwx------. 1 boincer umatlas     36292 Jul 27 02:35 runpilot2-wrapper.sh
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas       100 Jul 27 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 14:38:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 10:30 run_atlas
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas       105 Jul 27 10:30 job.xml
[2025-07-27 14:38:53] -rw-r--r--. 2 boincer umatlas 223278004 Jul 27 10:30 EVNT.45759170._000004.pool.root.1
[2025-07-27 14:38:53] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 10:30 input.tar.gz
[2025-07-27 14:38:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 10:30 start_atlas.sh
[2025-07-27 14:38:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 10:30 shared
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas         0 Jul 27 10:30 boinc_lockfile
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas      2565 Jul 27 10:30 pandaJob.out
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas    980109 Jul 27 10:30 agis_schedconf.cvmfs.json
[2025-07-27 14:38:53] drwx------. 4 boincer umatlas      4096 Jul 27 10:30 pilot3
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas      6858 Jul 27 14:27 init_data.xml
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas 162273571 Jul 27 14:37 HITS.45759175._000104.pool.root.1
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas       531 Jul 27 14:37 boinc_task_state.xml
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas        95 Jul 27 14:37 pilot_heartbeat.json
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas      1044 Jul 27 14:38 memory_monitor_summary.json
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas   1593052 Jul 27 14:38 agis_ddmendpoints.agis.ALL.json
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas    389172 Jul 27 14:38 log.45759175._000104.job.log.tgz.1
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas      7818 Jul 27 14:38 heartbeat.json
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas        28 Jul 27 14:38 wrapper_checkpoint.txt
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 14:38 boinc_mmap_file
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas       823 Jul 27 14:38 pilotlog.txt
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas   1260566 Jul 27 14:38 log.45759175._000104.job.log.1
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas       357 Jul 27 14:38 output.list
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas       620 Jul 27 14:38 runtime_log
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas   1669120 Jul 27 14:38 result.tar.gz
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas      8671 Jul 27 14:38 runtime_log.err
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas       657 Jul 27 14:38 jQGNDmx99z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmK61KDmVN3njm.diag
[2025-07-27 14:38:53] -rw-r--r--. 1 boincer umatlas     21261 Jul 27 14:38 stderr.txt
[2025-07-27 14:38:53] HITS file was successfully produced:
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas 162273571 Jul 27 14:37 shared/HITS.pool.root.1
[2025-07-27 14:38:53]  *** Contents of shared directory: ***
[2025-07-27 14:38:53] total 378704
[2025-07-27 14:38:53] -rw-r--r--. 2 boincer umatlas 223278004 Jul 27 10:30 ATLAS.root_0
[2025-07-27 14:38:53] -rw-r--r--. 2 boincer umatlas    542893 Jul 27 10:30 input.tar.gz
[2025-07-27 14:38:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 10:30 start_atlas.sh
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas 162273571 Jul 27 14:37 HITS.pool.root.1
[2025-07-27 14:38:53] -rw-------. 1 boincer umatlas   1669120 Jul 27 14:38 result.tar.gz
14:38:55 (2556031): run_atlas exited; CPU time 77459.787432
14:38:55 (2556031): called boinc_finish(0)

</stderr_txt>
]]>

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