Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:24:12 (215727): wrapper (7.7.26015): starting
12:24:12 (215727): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 12:24:12] Arguments: --nthreads 12
[2025-07-27 12:24:12] Threads: 12
[2025-07-27 12:24:12] Checking for CVMFS
[2025-07-27 12:24:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 12:24:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 12:24:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 12:24:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 12:24:12] 2.13.0.0 2408171 18601 313832 148818 2 135 22340766 32935936 7360 16776704 0 37931132 99.690 57960288 29760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 12:24:12] CVMFS is ok
[2025-07-27 12:24:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 12:24:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 12:24:12] Further information can be found at the LHC@home message board.
[2025-07-27 12:24:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 12:24:12] Checking for apptainer binary...
[2025-07-27 12:24:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 12:24:12] Running /usr/bin/apptainer --version
[2025-07-27 12:24:12] apptainer version 1.4.1-1.el9
[2025-07-27 12:24:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 12:24:12] c6-5-7-3.aglt2.org
[2025-07-27 12:24:12] apptainer works
[2025-07-27 12:24:12] Set ATHENA_PROC_NUMBER=12
[2025-07-27 12:24:12] Set ATHENA_CORE_NUMBER=12
[2025-07-27 12:24:12] Starting ATLAS job with PandaID=6746742087
[2025-07-27 12:24:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 13:48:09]  *** The last 200 lines of the pilot log: ***
[2025-07-27 13:48:09]  scope=mc23_13p6TeV
[2025-07-27 13:48:09]  status=None
[2025-07-27 13:48:09]  status_code=0
[2025-07-27 13:48:09]  storage_token=
[2025-07-27 13:48:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746742087/log.45759704._000121.job.log.tgz.1
[2025-07-27 13:48:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/8b/log.45759704._000121.job.log.tgz.1
[2025-07-27 13:48:09]  workdir=None
[2025-07-27 13:48:09] ]
[2025-07-27 13:48:09] 2025-07-27 17:47:26,160 | INFO     | transferring file log.45759704._000121.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746742087/log.45759704._000121.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 13:48:09] 2025-07-27 17:47:26,161 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746742087/log.45759704._000121.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759704._000121.job
[2025-07-27 13:48:09] 2025-07-27 17:47:26,181 | INFO     | adding to output.list: log.45759704._000121.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/8b/log.45759704._000121.job.log.tg
[2025-07-27 13:48:09] 2025-07-27 17:47:26,182 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 13:48:09] 2025-07-27 17:47:26,182 | INFO     | summary of transferred files:
[2025-07-27 13:48:09] 2025-07-27 17:47:26,182 | INFO     |  -- lfn=log.45759704._000121.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 13:48:09] 2025-07-27 17:47:26,183 | INFO     | stage-out finished correctly
[2025-07-27 13:48:09] 2025-07-27 17:47:28,669 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 13:48:09] 2025-07-27 17:47:28,840 | WARNING  | process 227919 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 13:48:09] 2025-07-27 17:47:28,841 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746742087/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:48:09] 2025-07-27 17:47:28,843 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746742087/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:48:09] 2025-07-27 17:47:29,089 | INFO     | number of running child processes to parent process 227919: 1
[2025-07-27 13:48:09] 2025-07-27 17:47:29,089 | INFO     | maximum number of monitored processes: 6
[2025-07-27 13:48:09] 2025-07-27 17:47:31,143 | INFO     | job 6746742087 has state=finished
[2025-07-27 13:48:09] 2025-07-27 17:47:31,144 | INFO     | preparing for final server update for job 6746742087 in state='finished'
[2025-07-27 13:48:09] 2025-07-27 17:47:31,144 | INFO     | this job has now completed (state=finished)
[2025-07-27 13:48:09] 2025-07-27 17:47:31,144 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 13:48:09] 2025-07-27 17:47:31,144 | INFO     | log transfer has been attempted: DONE
[2025-07-27 13:48:09] 2025-07-27 17:47:31,145 | INFO     | job 6746742087 has finished - writing final server update
[2025-07-27 13:48:09] 2025-07-27 17:47:31,145 | INFO     | total number of processed events: 400 (read)
[2025-07-27 13:48:09] 2025-07-27 17:47:31,147 | INFO     | executing command: lscpu
[2025-07-27 13:48:09] 2025-07-27 17:47:31,208 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 13:48:09] 2025-07-27 17:47:31,592 | INFO     | monitor loop #359: job 0:6746742087 is in state 'finished'
[2025-07-27 13:48:09] 2025-07-27 17:47:31,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:48:09] 2025-07-27 17:47:34,095 | INFO     | monitor loop #360: job 0:6746742087 is in state 'finished'
[2025-07-27 13:48:09] 2025-07-27 17:47:34,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 13:48:09] 2025-07-27 17:47:34,892 | INFO     | PID=220507 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 13:48:09] 2025-07-27 17:47:34,893 | INFO     | .. there are 10 such processes running
[2025-07-27 13:48:09] 2025-07-27 17:47:36,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 13:48:09] 2025-07-27 17:47:36,386 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2726.2314107142847
[2025-07-27 13:48:09] 2025-07-27 17:47:36,395 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746742087/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 13:48:09] 2025-07-27 17:47:36,396 | INFO     | extracted standard info from prmon json
[2025-07-27 13:48:09] 2025-07-27 17:47:36,396 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 13:48:09] 2025-07-27 17:47:36,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 13:48:09] 2025-07-27 17:47:36,396 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 13:48:09] 2025-07-27 17:47:36,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 13:48:09] 2025-07-27 17:47:36,398 | INFO     | fitting pss+swap vs Time
[2025-07-27 13:48:09] 2025-07-27 17:47:36,399 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | sum of deviations: -16476710427.0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | mean x: 1753636049.0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | mean y: 2635529.4133333336
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | -- intersect: 220917518103.32016
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | intersect: 220917518103.32016
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | chi2: 0.15252345695095482
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | -- intersect: 220917518103.32016
[2025-07-27 13:48:09] 2025-07-27 17:47:36,400 | INFO     | current memory leak: -125.98 B/s (using 75 data points, chi2=0.15)
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | could have reported an average CPU frequency of 2848 MHz (6 samples)
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | ..............................
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . Timing measurements:
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . get job = 0 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . initial setup = 3 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . payload setup = 5 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . stage-in = 0 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . payload execution = 4958 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . stage-out = 0 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,401 | INFO     | . log creation = 0 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,402 | INFO     | ..............................
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | 
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | job summary report
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | --------------------------------------------------
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | PanDA job id: 6746742087
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | task id: 45759704
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | errors: (none)
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | pilot state: finished 
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | transexitcode: 0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | exeerrorcode: 0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | exeerrordiag: 
[2025-07-27 13:48:09] 2025-07-27 17:47:36,487 | INFO     | exitcode: 0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | exitmsg: OK
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | cpuconsumptiontime: 53242 s
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | nevents: 400
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | neventsw: 0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | pid: 227919
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | pgrp: 227919
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | corecount: 12
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | event service: False
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | sizes: {0: 2397480, 4: 2397742, 11: 2397770, 4967: 2424099, 4968: 2433152, 4971: 2433152, 4979: 2433474}
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | --------------------------------------------------
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | 
[2025-07-27 13:48:09] 2025-07-27 17:47:36,488 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 13:48:09] 2025-07-27 17:47:36,515 | INFO     | job 6746742087 has completed (purged errors)
[2025-07-27 13:48:09] 2025-07-27 17:47:36,516 | INFO     | overall cleanup function is called
[2025-07-27 13:48:09] 2025-07-27 17:47:37,525 | INFO     | --- collectZombieJob: --- 10, [227919]
[2025-07-27 13:48:09] 2025-07-27 17:47:37,525 | INFO     | zombie collector waiting for pid 227919
[2025-07-27 13:48:09] 2025-07-27 17:47:37,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 13:48:09] 2025-07-27 17:47:37,525 | INFO     | collected zombie processes
[2025-07-27 13:48:09] 2025-07-27 17:47:37,525 | INFO     | will attempt to kill all subprocesses of pid=227919
[2025-07-27 13:48:09] 2025-07-27 17:47:37,789 | INFO     | process IDs to be killed: [227919] (in reverse order)
[2025-07-27 13:48:09] 2025-07-27 17:47:37,895 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 13:48:09] 2025-07-27 17:47:37,896 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 13:48:09] 2025-07-27 17:47:37,909 | INFO     | did not find any defunct processes belonging to 227919
[2025-07-27 13:48:09] 2025-07-27 17:47:37,921 | INFO     | did not find any defunct processes belonging to 227919
[2025-07-27 13:48:09] 2025-07-27 17:47:37,922 | INFO     | ready for new job
[2025-07-27 13:48:09] 2025-07-27 17:47:37,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 13:48:09] 2025-07-27 17:47:37,924 | INFO     | ***************************************
[2025-07-27 13:48:09] 2025-07-27 17:47:37,925 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 13:48:09] 2025-07-27 17:47:37,925 | INFO     | ***************************************
[2025-07-27 13:48:09] 2025-07-27 17:47:37,925 | INFO     | 
[2025-07-27 13:48:09] 2025-07-27 17:47:37,942 | INFO     | architecture information:
[2025-07-27 13:48:09] 2025-07-27 17:47:37,942 | INFO     | executing command: cat /etc/os-release
[2025-07-27 13:48:09] 2025-07-27 17:47:37,961 | INFO     | cat /etc/os-release:
[2025-07-27 13:48:09] NAME="CentOS Linux"
[2025-07-27 13:48:09] VERSION="7 (Core)"
[2025-07-27 13:48:09] ID="centos"
[2025-07-27 13:48:09] ID_LIKE="rhel fedora"
[2025-07-27 13:48:09] VERSION_ID="7"
[2025-07-27 13:48:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 13:48:09] ANSI_COLOR="0;31"
[2025-07-27 13:48:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 13:48:09] HOME_URL="https://www.centos.org/"
[2025-07-27 13:48:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 13:48:09] 
[2025-07-27 13:48:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 13:48:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 13:48:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 13:48:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 13:48:09] 
[2025-07-27 13:48:09] 2025-07-27 17:47:37,962 | INFO     | ***************************************
[2025-07-27 13:48:09] 2025-07-27 17:47:38,464 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 13:48:09] 2025-07-27 17:47:38,484 | INFO     | sufficient remaining disk space (76279709696 B)
[2025-07-27 13:48:09] 2025-07-27 17:47:38,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 13:48:09] 2025-07-27 17:47:38,485 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 13:48:09] 2025-07-27 17:47:38,485 | INFO     | update_server=False
[2025-07-27 13:48:09] 2025-07-27 17:47:38,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 13:48:09] 2025-07-27 17:47:38,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:48:09] 2025-07-27 17:47:38,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 13:48:09] 2025-07-27 17:47:38,487 | INFO     | aborting loop
[2025-07-27 13:48:09] 2025-07-27 17:47:39,272 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 13:48:09] 2025-07-27 17:47:39,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 13:48:09] 2025-07-27 17:47:39,319 | INFO     | all data control threads have been joined
[2025-07-27 13:48:09] 2025-07-27 17:47:39,490 | INFO     | [job] retrieve thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:39,491 | INFO     | [job] queue monitor thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:39,493 | INFO     | [job] job monitor thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:39,617 | INFO     | all job control threads have been joined
[2025-07-27 13:48:09] 2025-07-27 17:47:39,714 | INFO     | [data] copytool_in thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:39,766 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:39,772 | INFO     | [job] validate thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:39,963 | INFO     | all payload control threads have been joined
[2025-07-27 13:48:09] 2025-07-27 17:47:40,134 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:40,221 | INFO     | [payload] failed_post thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:40,291 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:40,325 | INFO     | [data] control thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:40,622 | INFO     | [job] control thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:40,812 | INFO     | [payload] validate_post thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:40,968 | INFO     | [payload] control thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:41,293 | INFO     | [data] copytool_out thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:43,278 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:49,209 | INFO     | job.realtimelogging is not enabled
[2025-07-27 13:48:09] 2025-07-27 17:47:50,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 13:48:09] 2025-07-27 17:47:50,615 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211423016768)>', '<ExcThread(monitor, started 140210935420672)>']
[2025-07-27 13:48:09] 2025-07-27 17:47:55,640 | INFO     | all workflow threads have been joined
[2025-07-27 13:48:09] 2025-07-27 17:47:55,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 13:48:09] 2025-07-27 17:47:55,640 | INFO     | traces error code: 0
[2025-07-27 13:48:09] 2025-07-27 17:47:55,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 13:48:09] 2025-07-27 17:48:09,308 | INFO     | PID=220507 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 13:48:09] 2025-07-27 17:48:09,308 | INFO     | .. there are 10 such processes running
[2025-07-27 13:48:09] 2025-07-27 17:48:09,309 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 13:48:09] 2025-07-27 17:48:09,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 13:48:09] 2025-07-27 17:48:09,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 13:48:09] 2025-07-27 17:48:09,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 13:48:09] 2025-07-27 17:48:09,309 | INFO     | [monitor] control thread has ended
[2025-07-27 13:48:09] 2025-07-27 17:48:09,488 [wrapper] ==== pilot stdout END ====
[2025-07-27 13:48:09] 2025-07-27 17:48:09,492 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 13:48:09] 2025-07-27 17:48:09,495 [wrapper] pilotpid: 220507
[2025-07-27 13:48:09] 2025-07-27 17:48:09,499 [wrapper] Pilot exit status: 0
[2025-07-27 13:48:09] 2025-07-27 17:48:09,513 [wrapper] pandaids: 6746742087
[2025-07-27 13:48:09] 2025-07-27 17:48:09,582 [wrapper] cleanup supervisor_pilot  555636 220508
[2025-07-27 13:48:09] 2025-07-27 17:48:09,585 [wrapper] Test setup, not cleaning
[2025-07-27 13:48:09] 2025-07-27 17:48:09,589 [wrapper] apfmon messages muted
[2025-07-27 13:48:09] 2025-07-27 17:48:09,593 [wrapper] ==== wrapper stdout END ====
[2025-07-27 13:48:09] 2025-07-27 17:48:09,598 [wrapper] ==== wrapper stderr END ====
[2025-07-27 13:48:09]  *** Error codes and diagnostics ***
[2025-07-27 13:48:09]     "exeErrorCode": 0,
[2025-07-27 13:48:09]     "exeErrorDiag": "",
[2025-07-27 13:48:09]     "pilotErrorCode": 0,
[2025-07-27 13:48:09]     "pilotErrorDiag": "",
[2025-07-27 13:48:09]  *** Listing of results directory ***
[2025-07-27 13:48:09] total 402676
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 04:38 pilot3.tar.gz
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 05:00 queuedata.json
[2025-07-27 13:48:09] -rwx------. 1 boincer umatlas     36292 Jul 27 05:00 runpilot2-wrapper.sh
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas       100 Jul 27 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 13:48:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 12:24 run_atlas
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas       105 Jul 27 12:24 job.xml
[2025-07-27 13:48:09] -rw-r--r--. 2 boincer umatlas 239244881 Jul 27 12:24 EVNT.45759700._000005.pool.root.1
[2025-07-27 13:48:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:24 start_atlas.sh
[2025-07-27 13:48:09] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 12:24 shared
[2025-07-27 13:48:09] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 12:24 input.tar.gz
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas         0 Jul 27 12:24 boinc_lockfile
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas      2571 Jul 27 12:24 pandaJob.out
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas    980125 Jul 27 12:24 agis_schedconf.cvmfs.json
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas   1593052 Jul 27 12:24 agis_ddmendpoints.agis.ALL.json
[2025-07-27 13:48:09] drwx------. 4 boincer umatlas      4096 Jul 27 12:24 pilot3
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas       529 Jul 27 13:46 boinc_task_state.xml
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas 167493635 Jul 27 13:46 HITS.45759704._000121.pool.root.1
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas      1039 Jul 27 13:47 memory_monitor_summary.json
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas    379458 Jul 27 13:47 log.45759704._000121.job.log.tgz.1
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas      7819 Jul 27 13:47 heartbeat.json
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas      6841 Jul 27 13:48 init_data.xml
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 13:48 boinc_mmap_file
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas        27 Jul 27 13:48 wrapper_checkpoint.txt
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas        95 Jul 27 13:48 pilot_heartbeat.json
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas       822 Jul 27 13:48 pilotlog.txt
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas    483920 Jul 27 13:48 log.45759704._000121.job.log.1
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas       357 Jul 27 13:48 output.list
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas       620 Jul 27 13:48 runtime_log
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas    880640 Jul 27 13:48 result.tar.gz
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 13:48 runtime_log.err
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas       654 Jul 27 13:48 E0ZNDmaQC07n9Rq4apOajLDm4fhM0noT9bVof3QYDmCJ2KDmeBQhLo.diag
[2025-07-27 13:48:09] -rw-r--r--. 1 boincer umatlas     22076 Jul 27 13:48 stderr.txt
[2025-07-27 13:48:09] HITS file was successfully produced:
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas 167493635 Jul 27 13:46 shared/HITS.pool.root.1
[2025-07-27 13:48:09]  *** Contents of shared directory: ***
[2025-07-27 13:48:09] total 398624
[2025-07-27 13:48:09] -rw-r--r--. 2 boincer umatlas 239244881 Jul 27 12:24 ATLAS.root_0
[2025-07-27 13:48:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 12:24 start_atlas.sh
[2025-07-27 13:48:09] -rw-r--r--. 2 boincer umatlas    542894 Jul 27 12:24 input.tar.gz
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas 167493635 Jul 27 13:46 HITS.pool.root.1
[2025-07-27 13:48:09] -rw-------. 1 boincer umatlas    880640 Jul 27 13:48 result.tar.gz
13:48:10 (215727): run_atlas exited; CPU time 53330.692468
13:48:10 (215727): called boinc_finish(0)

</stderr_txt>
]]>

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